Wall clock time and date at job start Tue Mar 31 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.46812 * 2 1 4 4 C 1.37839 * 125.90117 * 269.99408 * 3 2 1 5 5 C 1.47179 * 127.01759 * 0.02894 * 4 3 2 6 6 O 1.21659 * 119.99866 * 353.53258 * 5 4 3 7 7 N 1.34776 * 120.00352 * 173.53216 * 5 4 3 8 8 C 1.36972 * 120.00187 * 174.33806 * 7 5 4 9 9 H 1.07998 * 120.00626 * 7.04925 * 8 7 5 10 10 C 1.38977 * 120.00084 * 186.77940 * 8 7 5 11 11 N 1.31412 * 119.99715 * 22.79503 * 10 8 7 12 12 Si 1.86793 * 120.00140 * 202.79496 * 10 8 7 13 13 H 1.48501 * 109.47239 * 90.00039 * 12 10 8 14 14 H 1.48498 * 109.47320 * 209.99606 * 12 10 8 15 15 H 1.48496 * 109.47227 * 329.99936 * 12 10 8 16 16 C 1.46504 * 119.99801 * 354.33785 * 7 5 4 17 17 C 1.50701 * 109.47197 * 89.89281 * 16 7 5 18 18 O 1.20832 * 119.99945 * 0.02562 * 17 16 7 19 19 O 1.34225 * 120.00244 * 180.02562 * 17 16 7 20 20 C 1.46711 * 105.96467 * 179.76414 * 4 3 2 21 21 C 1.34449 * 106.39242 * 0.24407 * 20 4 3 22 22 N 1.34709 * 125.90304 * 90.18240 * 3 2 1 23 23 C 1.46494 * 124.81724 * 359.97361 * 22 3 2 24 24 H 1.09004 * 109.47323 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47683 * 300.00580 * 1 2 3 26 26 H 1.09002 * 109.47344 * 60.00165 * 1 2 3 27 27 H 1.08994 * 109.47299 * 239.99625 * 2 1 3 28 28 H 1.09006 * 109.46869 * 119.99261 * 2 1 3 29 29 H 0.96999 * 119.99983 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.46846 * 209.89561 * 16 7 5 31 31 H 1.09006 * 109.46701 * 329.89495 * 16 7 5 32 32 H 0.96690 * 117.00003 * 180.02562 * 19 17 16 33 33 H 1.08004 * 126.81083 * 180.25631 * 20 4 3 34 34 H 1.07995 * 125.46446 * 179.97438 * 21 20 4 35 35 H 1.09001 * 109.47620 * 270.29337 * 23 22 3 36 36 H 1.09005 * 109.46947 * 30.29585 * 23 22 3 37 37 H 1.09002 * 109.46836 * 150.28944 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3017 2.1829 -1.1165 5 6 2.1572 1.7754 -2.5234 6 8 1.8755 0.6240 -2.7974 7 7 2.3369 2.6778 -3.5083 8 6 2.3174 2.2757 -4.8175 9 1 2.0458 1.2606 -5.0667 10 6 2.6415 3.1757 -5.8257 11 7 3.3769 4.2302 -5.5536 12 14 2.0319 2.8863 -7.5675 13 1 0.7125 3.5440 -7.7458 14 1 3.0042 3.4576 -8.5336 15 1 1.8943 1.4274 -7.8078 16 6 2.5532 4.0887 -3.1784 17 6 4.0290 4.3457 -3.0142 18 8 4.8192 3.4430 -3.1584 19 8 4.4658 5.5774 -2.7077 20 6 2.7558 3.4851 -0.6163 21 6 2.7304 3.4060 0.7256 22 7 2.2988 2.1645 1.0912 23 6 2.1412 1.7071 2.4739 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6028 4.8585 -6.2572 30 1 2.1627 4.7135 -3.9816 31 1 2.0371 4.3276 -2.2485 32 1 5.4211 5.6934 -2.6131 33 1 3.0518 4.3385 -1.2085 34 1 3.0076 4.1981 1.4054 35 1 1.1317 1.9319 2.8182 36 1 2.3106 0.6314 2.5224 37 1 2.8642 2.2178 3.1101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597400761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:27 Heat of formation + Delta-G solvation = -68.581646 kcal Electronic energy + Delta-G solvation = -23101.826364 eV Core-core repulsion = 19652.663615 eV Total energy + Delta-G solvation = -3449.162749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31682 -40.97664 -39.59437 -36.98256 -36.33084 -34.57622 -34.02714 -33.13711 -29.79492 -29.18779 -27.72180 -26.43205 -24.34722 -22.97703 -22.45851 -21.39890 -19.23686 -19.04044 -18.65923 -17.91956 -17.39889 -17.19303 -16.40882 -16.28919 -15.96634 -15.91894 -15.13677 -14.94729 -14.79735 -14.34457 -14.10666 -13.69992 -13.52940 -13.51949 -13.31765 -13.13751 -12.88114 -12.70712 -12.44702 -12.27141 -12.21167 -12.12636 -11.95542 -11.77447 -11.47413 -10.88594 -10.35577 -9.89040 -9.41607 -8.99474 -8.41757 -5.85230 0.89510 1.40401 1.42461 1.54738 1.56089 1.80340 2.04616 2.26023 2.46522 2.65162 3.10209 3.34840 3.82420 4.02559 4.06788 4.21679 4.36048 4.41639 4.42609 4.53731 4.62708 4.70378 4.77432 4.83569 4.87818 5.00569 5.09859 5.13785 5.35150 5.37543 5.47350 5.85552 5.97906 6.01375 6.23883 6.45623 6.54795 7.15027 7.37295 7.52245 8.05701 8.64183 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.006888 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.217194 B = 4064.113365 C = 5146.168188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C 0.084 3.916 4 C -0.250 4.250 5 C 0.516 3.484 6 O -0.626 6.626 7 N -0.442 5.442 8 C -0.336 4.336 9 H 0.080 0.920 10 C -0.006 4.006 11 N -0.896 5.896 12 Si 0.996 3.004 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.130 3.870 17 C 0.509 3.491 18 O -0.555 6.555 19 O -0.518 6.518 20 C -0.226 4.226 21 C 0.004 3.996 22 N -0.437 5.437 23 C 0.060 3.940 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.276 0.724 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.210 0.790 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 3.167 16.667 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C -0.034 4.034 4 C -0.260 4.260 5 C 0.309 3.691 6 O -0.514 6.514 7 N -0.160 5.160 8 C -0.463 4.463 9 H 0.098 0.902 10 C -0.206 4.206 11 N -0.536 5.536 12 Si 0.819 3.181 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.203 1.203 16 C 0.005 3.995 17 C 0.352 3.648 18 O -0.444 6.444 19 O -0.331 6.331 20 C -0.249 4.249 21 C -0.124 4.124 22 N -0.112 5.112 23 C -0.079 4.079 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.271 0.729 33 H 0.164 0.836 34 H 0.227 0.773 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.315 2.398 16.685 17.180 hybrid contribution 0.928 0.040 -1.518 1.780 sum -2.387 2.438 15.167 15.546 Atomic orbital electron populations 1.21556 0.93350 1.02513 1.01184 1.20219 0.97239 0.88689 1.03434 1.20609 1.02316 0.95160 0.85321 1.20622 1.16140 0.97585 0.91615 1.17839 0.81528 0.84493 0.85238 1.90483 1.55849 1.20202 1.84885 1.43408 1.61250 1.05789 1.05538 1.19687 1.45934 0.98886 0.81819 0.90223 1.25969 0.95073 0.95755 1.03799 1.69875 1.32859 1.15070 1.35805 0.84902 0.78544 0.78296 0.76329 1.18589 1.20146 1.20299 1.21610 0.89023 0.84889 1.04002 1.23579 0.92998 0.79076 0.69153 1.90578 1.58145 1.47238 1.48438 1.84459 1.32551 1.33197 1.82869 1.22754 1.09602 0.97142 0.95435 1.22186 1.06064 0.88811 0.95338 1.43743 1.49646 1.10838 1.06958 1.22458 1.05075 1.02821 0.77583 0.90564 0.91120 0.95460 0.91577 0.88463 0.91423 0.86539 0.85946 0.72918 0.83569 0.77333 0.88938 0.88890 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.89 71.98 0.71 -2.91 16 2 C -0.06 -1.86 5.66 29.85 0.17 -1.69 16 3 C 0.08 3.01 6.18 42.02 0.26 3.27 16 4 C -0.25 -11.31 6.10 -18.81 -0.11 -11.42 16 5 C 0.52 29.03 7.60 86.59 0.66 29.69 16 6 O -0.63 -38.33 14.44 -4.22 -0.06 -38.39 16 7 N -0.44 -25.25 2.11 -643.54 -1.36 -26.60 16 8 C -0.34 -20.46 9.47 84.07 0.80 -19.66 16 9 H 0.08 5.19 7.27 -2.91 -0.02 5.17 16 10 C -0.01 -0.32 4.99 84.93 0.42 0.10 16 11 N -0.90 -48.94 8.94 21.67 0.19 -48.74 16 12 Si 1.00 44.40 29.61 68.60 2.03 46.43 16 13 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C 0.13 6.33 4.72 85.63 0.40 6.74 16 17 C 0.51 24.29 4.10 71.24 0.29 24.59 16 18 O -0.55 -31.63 17.07 21.95 0.37 -31.25 16 19 O -0.52 -19.03 13.20 -51.37 -0.68 -19.70 16 20 C -0.23 -8.43 8.32 23.62 0.20 -8.23 16 21 C 0.00 0.09 11.32 83.11 0.94 1.04 16 22 N -0.44 -11.40 3.09 -532.25 -1.64 -13.04 16 23 C 0.06 0.80 10.81 127.77 1.38 2.18 16 24 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 2.72 6.40 -2.39 -0.02 2.71 16 28 H 0.10 2.27 6.93 -2.38 -0.02 2.25 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.12 5.85 6.08 -2.39 -0.01 5.84 16 31 H 0.12 5.20 4.63 -2.38 -0.01 5.19 16 32 H 0.41 11.42 9.10 -74.06 -0.67 10.75 16 33 H 0.15 5.51 3.51 -2.91 -0.01 5.50 16 34 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.08 6.89 -2.38 -0.02 1.06 16 37 H 0.11 0.89 8.13 -2.39 -0.02 0.87 16 Total: -1.00 -85.03 306.84 5.43 -79.60 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.45 Total: 28.00 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 6.12 Total: 23.70 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.81 Total: -88.39 kcal Atomic # 8 Polarization: -88.98 SS G_CDS: -0.36 Total: -89.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.03 5.43 -79.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597400761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.016 kcal (2) G-P(sol) polarization free energy of solvation -85.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds