Wall clock time and date at job start Tue Mar 31 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34224 * 125.80236 * 2 1 4 4 H 0.97005 * 125.38565 * 0.02562 * 3 2 1 5 5 C 1.37793 * 109.23850 * 180.02562 * 3 2 1 6 6 C 1.46817 * 125.84531 * 179.97438 * 5 3 2 7 7 O 1.21676 * 120.00461 * 180.02562 * 6 5 3 8 8 N 1.34780 * 119.99759 * 0.02765 * 6 5 3 9 9 C 1.46495 * 119.99860 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47423 * 324.99605 * 9 8 6 11 11 C 1.53002 * 109.47111 * 85.00029 * 9 8 6 12 12 C 1.50701 * 109.47263 * 204.99849 * 9 8 6 13 13 H 1.08001 * 119.99976 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00312 * 179.97438 * 12 9 8 15 15 N 1.31519 * 120.00188 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00062 * 0.02562 * 14 12 9 17 17 H 1.48496 * 109.47087 * 89.99710 * 16 14 12 18 18 H 1.48494 * 109.47078 * 209.99996 * 16 14 12 19 19 H 1.48505 * 109.46789 * 329.99773 * 16 14 12 20 20 C 1.36325 * 108.31785 * 0.02562 * 5 3 2 21 21 C 1.50702 * 126.49799 * 179.73838 * 20 5 3 22 22 C 1.38288 * 125.81215 * 180.02562 * 2 1 3 23 23 C 1.47247 * 126.47127 * 359.97438 * 22 2 1 24 24 O 1.21524 * 120.00009 * 269.99859 * 23 22 2 25 25 O 1.34766 * 119.99682 * 89.99668 * 23 22 2 26 26 H 1.08998 * 109.46647 * 89.98122 * 1 2 3 27 27 H 1.09002 * 109.46731 * 209.97270 * 1 2 3 28 28 H 1.08994 * 109.47591 * 329.97869 * 1 2 3 29 29 H 0.96999 * 119.99873 * 0.02562 * 8 6 5 30 30 H 1.09006 * 109.46786 * 179.97438 * 11 9 8 31 31 H 1.08999 * 109.46701 * 299.99560 * 11 9 8 32 32 H 1.08992 * 109.47212 * 60.00346 * 11 9 8 33 33 H 0.96999 * 120.00272 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47681 * 90.00118 * 21 20 5 35 35 H 1.09006 * 109.46874 * 210.00015 * 21 20 5 36 36 H 1.08999 * 109.47135 * 329.99419 * 21 20 5 37 37 H 0.96705 * 116.99537 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0886 0.0000 4 1 1.9794 2.0068 0.0004 5 6 3.6129 0.6958 -0.0006 6 6 4.7763 1.5914 -0.0013 7 8 5.9012 1.1276 -0.0022 8 7 4.5982 2.9274 -0.0009 9 6 5.7590 3.8210 -0.0010 10 1 6.5606 3.3756 0.5881 11 6 6.2393 4.0329 -1.4382 12 6 5.3717 5.1477 0.5999 13 1 4.3620 5.3089 0.9476 14 6 6.3067 6.1554 0.7068 15 7 5.9685 7.3133 1.2308 16 14 8.0534 5.8765 0.1062 17 1 8.1550 6.2722 -1.3215 18 1 8.9916 6.6954 0.9149 19 1 8.4019 4.4398 0.2476 20 6 3.6547 -0.6668 -0.0015 21 6 4.8930 -1.5257 -0.0079 22 6 2.3162 -1.1214 -0.0005 23 6 1.8681 -2.5241 -0.0006 24 8 1.6836 -3.1031 1.0518 25 8 1.6625 -3.1656 -1.1678 26 1 -0.3632 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5141 29 1 3.7014 3.2971 0.0003 30 1 7.1028 4.6983 -1.4383 31 1 6.5195 3.0734 -1.8727 32 1 5.4378 4.4785 -2.0272 33 1 6.6262 8.0224 1.3057 34 1 5.1965 -1.7334 1.0181 35 1 4.6818 -2.4638 -0.5213 36 1 5.6962 -1.0012 -0.5254 37 1 1.3683 -4.0855 -1.1172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599950616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:04 Heat of formation + Delta-G solvation = -90.883468 kcal Electronic energy + Delta-G solvation = -21728.090536 eV Core-core repulsion = 18277.960708 eV Total energy + Delta-G solvation = -3450.129829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78902 -39.83978 -38.66969 -36.09618 -35.21698 -33.10139 -32.56570 -31.84119 -29.94175 -28.26310 -26.42519 -25.25425 -24.23477 -21.95871 -20.44810 -19.84476 -19.40203 -18.49402 -18.00169 -16.61313 -16.14895 -15.82860 -15.48747 -15.19063 -15.01708 -14.28112 -14.03445 -13.53001 -13.43219 -13.17174 -13.12895 -12.98043 -12.89064 -12.38669 -12.26700 -12.23435 -11.87838 -11.72468 -11.50949 -11.35792 -10.87641 -10.85749 -10.25699 -9.79276 -9.36255 -9.32337 -8.97437 -8.83855 -8.42578 -8.07872 -6.27745 -4.31340 1.49207 2.01794 2.11042 2.77097 3.19287 3.23352 3.32002 3.35925 3.68727 3.81533 4.26108 4.45816 4.76385 5.02857 5.07326 5.14606 5.19365 5.29066 5.50208 5.53365 5.68078 5.90232 6.03795 6.21851 6.24265 6.30145 6.34823 6.47761 6.48937 6.71051 6.80381 7.06743 7.16256 7.19283 7.41622 7.79891 8.03434 8.38061 8.65133 8.75155 9.32308 10.84239 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.004013 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.505429 B = 6975.482416 C = 7499.665398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.104 3.896 3 N -0.519 5.519 4 H 0.424 0.576 5 C -0.039 4.039 6 C 0.577 3.423 7 O -0.535 6.535 8 N -0.700 5.700 9 C 0.238 3.762 10 H 0.052 0.948 11 C -0.162 4.162 12 C -0.538 4.538 13 H 0.079 0.921 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.886 3.114 17 H -0.276 1.276 18 H -0.293 1.293 19 H -0.261 1.261 20 C -0.036 4.036 21 C -0.094 4.094 22 C -0.219 4.219 23 C 0.570 3.430 24 O -0.509 6.509 25 O -0.510 6.510 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.388 0.612 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -15.523 -5.539 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.019 4.019 3 N -0.115 5.115 4 H 0.263 0.737 5 C -0.151 4.151 6 C 0.363 3.637 7 O -0.413 6.413 8 N -0.347 5.347 9 C 0.135 3.865 10 H 0.070 0.930 11 C -0.220 4.220 12 C -0.576 4.576 13 H 0.097 0.903 14 C -0.125 4.125 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.185 1.185 20 C -0.044 4.044 21 C -0.151 4.151 22 C -0.227 4.227 23 C 0.412 3.588 24 O -0.397 6.397 25 O -0.321 6.321 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.221 0.779 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.114 -15.186 -5.209 18.975 hybrid contribution 0.018 0.154 -0.245 0.290 sum -10.096 -15.032 -5.454 18.911 Atomic orbital electron populations 1.20535 0.86785 1.04333 1.03728 1.20445 0.93392 0.85131 1.02900 1.41599 1.05655 1.08676 1.55552 0.73700 1.20162 0.83059 0.94087 1.17780 1.17025 0.86919 0.82139 0.77631 1.90772 1.23152 1.75835 1.51551 1.46114 1.11101 1.04832 1.72648 1.19155 0.84822 0.89400 0.93145 0.92989 1.22456 1.00560 0.99462 0.99505 1.20995 0.99627 0.95114 1.41883 0.90318 1.24825 0.98773 0.94656 0.94198 1.69863 1.35249 1.03849 1.43807 0.86862 0.84328 0.79024 0.78229 1.20244 1.22069 1.18541 1.19458 0.93253 0.91422 1.00223 1.20430 0.94345 0.97467 1.02828 1.18124 0.93666 0.88863 1.22075 1.20007 0.71977 0.86123 0.80676 1.90899 1.47662 1.67947 1.33143 1.84738 1.80009 1.31726 1.35624 0.89660 0.89787 0.90323 0.77907 0.93288 0.94338 0.92845 0.92186 0.90941 0.92391 0.88993 0.73468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.24 36.01 0.37 -0.34 16 2 C 0.10 1.18 7.21 -81.53 -0.59 0.59 16 3 N -0.52 -6.15 5.91 -5.61 -0.03 -6.18 16 4 H 0.42 3.85 8.13 -40.82 -0.33 3.52 16 5 C -0.04 -0.62 6.99 -82.41 -0.58 -1.19 16 6 C 0.58 10.92 7.76 -12.79 -0.10 10.82 16 7 O -0.54 -11.70 14.36 5.21 0.07 -11.62 16 8 N -0.70 -13.37 5.07 -56.20 -0.28 -13.66 16 9 C 0.24 5.50 2.15 -69.08 -0.15 5.35 16 10 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 11 C -0.16 -3.50 8.96 37.16 0.33 -3.17 16 12 C -0.54 -14.13 9.31 -34.44 -0.32 -14.45 16 13 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 14 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 15 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 16 Si 0.89 21.32 24.37 -169.99 -4.14 17.17 16 17 H -0.28 -6.41 6.87 56.52 0.39 -6.02 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 20 C -0.04 -0.56 6.21 -104.12 -0.65 -1.21 16 21 C -0.09 -1.36 9.63 36.01 0.35 -1.02 16 22 C -0.22 -2.99 6.01 -105.03 -0.63 -3.62 16 23 C 0.57 7.23 7.51 34.39 0.26 7.49 16 24 O -0.51 -7.69 17.89 -19.28 -0.35 -8.03 16 25 O -0.51 -4.81 13.44 -40.67 -0.55 -5.36 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.39 6.30 7.62 -40.82 -0.31 5.99 16 30 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.09 1.46 6.42 -51.93 -0.33 1.13 16 37 H 0.41 1.79 9.11 45.56 0.42 2.20 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -34.30 317.08 -5.14 -39.44 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.62 Total: 7.21 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.80 Total: 1.34 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.46 Total: -44.93 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.82 Total: -25.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.30 -5.14 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.441 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds