Wall clock time and date at job start Tue Mar 31 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34224 * 125.80236 * 2 1 4 4 H 0.97005 * 125.38565 * 0.02562 * 3 2 1 5 5 C 1.37793 * 109.23850 * 180.02562 * 3 2 1 6 6 C 1.46817 * 125.84531 * 179.97438 * 5 3 2 7 7 O 1.21676 * 120.00461 * 180.02562 * 6 5 3 8 8 N 1.34780 * 119.99759 * 0.02765 * 6 5 3 9 9 C 1.46495 * 119.99860 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47423 * 324.99605 * 9 8 6 11 11 C 1.53002 * 109.47111 * 85.00029 * 9 8 6 12 12 C 1.50701 * 109.47263 * 204.99849 * 9 8 6 13 13 H 1.08001 * 119.99976 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00312 * 179.97438 * 12 9 8 15 15 N 1.31519 * 120.00188 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00062 * 0.02562 * 14 12 9 17 17 H 1.48496 * 109.47087 * 89.99710 * 16 14 12 18 18 H 1.48494 * 109.47078 * 209.99996 * 16 14 12 19 19 H 1.48505 * 109.46789 * 329.99773 * 16 14 12 20 20 C 1.36325 * 108.31785 * 0.02562 * 5 3 2 21 21 C 1.50702 * 126.49799 * 179.73838 * 20 5 3 22 22 C 1.38288 * 125.81215 * 180.02562 * 2 1 3 23 23 C 1.47247 * 126.47127 * 359.97438 * 22 2 1 24 24 O 1.21524 * 120.00009 * 269.99859 * 23 22 2 25 25 O 1.34766 * 119.99682 * 89.99668 * 23 22 2 26 26 H 1.08998 * 109.46647 * 89.98122 * 1 2 3 27 27 H 1.09002 * 109.46731 * 209.97270 * 1 2 3 28 28 H 1.08994 * 109.47591 * 329.97869 * 1 2 3 29 29 H 0.96999 * 119.99873 * 0.02562 * 8 6 5 30 30 H 1.09006 * 109.46786 * 179.97438 * 11 9 8 31 31 H 1.08999 * 109.46701 * 299.99560 * 11 9 8 32 32 H 1.08992 * 109.47212 * 60.00346 * 11 9 8 33 33 H 0.96999 * 120.00272 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47681 * 90.00118 * 21 20 5 35 35 H 1.09006 * 109.46874 * 210.00015 * 21 20 5 36 36 H 1.08999 * 109.47135 * 329.99419 * 21 20 5 37 37 H 0.96705 * 116.99537 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0886 0.0000 4 1 1.9794 2.0068 0.0004 5 6 3.6129 0.6958 -0.0006 6 6 4.7763 1.5914 -0.0013 7 8 5.9012 1.1276 -0.0022 8 7 4.5982 2.9274 -0.0009 9 6 5.7590 3.8210 -0.0010 10 1 6.5606 3.3756 0.5881 11 6 6.2393 4.0329 -1.4382 12 6 5.3717 5.1477 0.5999 13 1 4.3620 5.3089 0.9476 14 6 6.3067 6.1554 0.7068 15 7 5.9685 7.3133 1.2308 16 14 8.0534 5.8765 0.1062 17 1 8.1550 6.2722 -1.3215 18 1 8.9916 6.6954 0.9149 19 1 8.4019 4.4398 0.2476 20 6 3.6547 -0.6668 -0.0015 21 6 4.8930 -1.5257 -0.0079 22 6 2.3162 -1.1214 -0.0005 23 6 1.8681 -2.5241 -0.0006 24 8 1.6836 -3.1031 1.0518 25 8 1.6625 -3.1656 -1.1678 26 1 -0.3632 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5141 29 1 3.7014 3.2971 0.0003 30 1 7.1028 4.6983 -1.4383 31 1 6.5195 3.0734 -1.8727 32 1 5.4378 4.4785 -2.0272 33 1 6.6262 8.0224 1.3057 34 1 5.1965 -1.7334 1.0181 35 1 4.6818 -2.4638 -0.5213 36 1 5.6962 -1.0012 -0.5254 37 1 1.3683 -4.0855 -1.1172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599950616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:04 Heat of formation + Delta-G solvation = -117.628904 kcal Electronic energy + Delta-G solvation = -21729.250305 eV Core-core repulsion = 18277.960708 eV Total energy + Delta-G solvation = -3451.289598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84627 -40.84932 -40.12363 -36.98169 -36.95203 -34.59523 -34.00705 -33.01326 -31.54921 -29.21202 -27.59983 -27.20115 -25.32053 -23.37931 -21.88022 -20.99681 -20.65562 -19.78329 -18.93690 -18.42297 -17.48783 -17.10035 -16.71561 -16.46464 -16.33719 -15.67213 -15.40812 -14.89155 -14.84137 -14.49532 -14.22771 -14.12244 -14.07384 -13.81697 -13.62782 -13.31797 -13.18329 -13.13188 -12.80159 -12.68088 -12.48005 -12.15862 -11.86712 -11.63097 -11.31073 -10.95450 -10.88009 -10.07004 -10.00097 -9.22431 -8.39690 -6.46122 0.35295 1.05936 1.08118 1.27820 1.36713 1.45598 1.82529 2.17612 2.25673 2.27651 2.50324 2.97105 3.63874 3.80729 3.95821 4.11116 4.43071 4.43886 4.53006 4.54075 4.63114 4.67832 4.70064 4.74866 4.94961 4.97165 5.04012 5.16889 5.26560 5.38492 5.46141 5.54758 5.55324 5.63155 6.10111 6.27086 6.53924 6.75239 7.02464 7.14225 7.29676 8.75209 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.004013 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.505429 B = 6975.482416 C = 7499.665398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.133 3.867 3 N -0.508 5.508 4 H 0.437 0.563 5 C -0.067 4.067 6 C 0.579 3.421 7 O -0.571 6.571 8 N -0.697 5.697 9 C 0.243 3.757 10 H 0.026 0.974 11 C -0.156 4.156 12 C -0.535 4.535 13 H 0.059 0.941 14 C 0.032 3.968 15 N -0.932 5.932 16 Si 0.937 3.063 17 H -0.259 1.259 18 H -0.293 1.293 19 H -0.261 1.261 20 C -0.043 4.043 21 C -0.092 4.092 22 C -0.249 4.249 23 C 0.581 3.419 24 O -0.539 6.539 25 O -0.501 6.501 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.402 0.598 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.271 0.729 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -16.638 -6.773 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.009 3.991 3 N -0.105 5.105 4 H 0.279 0.721 5 C -0.178 4.178 6 C 0.367 3.633 7 O -0.451 6.451 8 N -0.345 5.345 9 C 0.139 3.861 10 H 0.044 0.956 11 C -0.214 4.214 12 C -0.573 4.573 13 H 0.077 0.923 14 C -0.169 4.169 15 N -0.571 5.571 16 Si 0.764 3.236 17 H -0.184 1.184 18 H -0.221 1.221 19 H -0.186 1.186 20 C -0.051 4.051 21 C -0.149 4.149 22 C -0.256 4.256 23 C 0.424 3.576 24 O -0.429 6.429 25 O -0.314 6.314 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.237 0.763 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -11.737 -16.310 -6.475 21.111 hybrid contribution 0.360 0.400 0.139 0.556 sum -11.376 -15.910 -6.336 20.560 Atomic orbital electron populations 1.20759 0.83406 1.05627 1.05605 1.21127 0.95095 0.84027 0.98860 1.41544 1.04334 1.09691 1.54886 0.72147 1.19564 0.83537 0.93531 1.21119 1.17349 0.87528 0.81951 0.76447 1.90746 1.24931 1.76357 1.53094 1.45861 1.10769 1.04797 1.73116 1.18816 0.85495 0.88228 0.93590 0.95568 1.22348 1.00688 0.99926 0.98400 1.21212 0.98691 0.96300 1.41059 0.92323 1.25522 1.02298 0.94485 0.94548 1.69965 1.36600 1.04857 1.45646 0.86032 0.80184 0.78717 0.78638 1.18425 1.22076 1.18614 1.19684 0.94312 0.91547 0.99583 1.20393 0.93868 0.98077 1.02579 1.18343 0.93253 0.90308 1.23712 1.19767 0.71267 0.85729 0.80820 1.90893 1.49218 1.68497 1.34310 1.84679 1.79407 1.33511 1.33850 0.87297 0.89437 0.88083 0.76273 0.93937 0.93402 0.91515 0.92004 0.91296 0.90569 0.90749 0.70776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.24 71.24 0.73 -0.30 16 2 C 0.13 2.65 7.21 42.20 0.30 2.95 16 3 N -0.51 -10.97 5.91 -171.65 -1.01 -11.98 16 4 H 0.44 6.89 8.13 -92.70 -0.75 6.14 16 5 C -0.07 -2.03 6.99 40.01 0.28 -1.75 16 6 C 0.58 21.92 7.76 86.49 0.67 22.59 16 7 O -0.57 -25.38 14.36 -4.27 -0.06 -25.45 16 8 N -0.70 -26.45 5.07 -449.94 -2.28 -28.73 16 9 C 0.24 11.23 2.15 44.25 0.10 11.32 16 10 H 0.03 1.36 6.63 -2.39 -0.02 1.35 16 11 C -0.16 -6.56 8.96 71.98 0.65 -5.91 16 12 C -0.53 -28.25 9.31 25.60 0.24 -28.01 16 13 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 14 C 0.03 1.74 5.45 84.65 0.46 2.20 16 15 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 16 Si 0.94 43.80 24.37 68.60 1.67 45.47 16 17 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.26 -12.17 6.53 99.48 0.65 -11.52 16 20 C -0.04 -1.30 6.21 -19.54 -0.12 -1.43 16 21 C -0.09 -2.68 9.63 71.24 0.69 -1.99 16 22 C -0.25 -6.32 6.01 -20.13 -0.12 -6.44 16 23 C 0.58 13.51 7.51 70.19 0.53 14.03 16 24 O -0.54 -15.43 17.89 19.76 0.35 -15.08 16 25 O -0.50 -8.02 13.44 -56.77 -0.76 -8.79 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.97 7.93 -2.39 -0.02 0.95 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.40 12.78 7.62 -92.71 -0.71 12.07 16 30 H 0.04 1.84 3.27 -2.38 -0.01 1.83 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.86 8.05 -2.38 -0.02 1.84 16 36 H 0.07 2.42 6.42 -2.39 -0.02 2.41 16 37 H 0.43 2.47 9.11 -74.05 -0.67 1.79 16 Total: -1.00 -74.64 317.08 1.54 -73.10 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -1.06 Total: 18.59 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.39 Total: 7.26 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -2.99 Total: -95.11 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.47 Total: -49.31 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Total: -74.64 1.54 -73.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.526 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds