Wall clock time and date at job start Tue Mar 31 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34218 * 125.80535 * 2 1 4 4 H 0.97005 * 125.37782 * 359.97438 * 3 2 1 5 5 C 1.37788 * 109.23882 * 180.11001 * 3 2 1 6 6 C 1.46813 * 125.84273 * 179.88302 * 5 3 2 7 7 O 1.21683 * 120.00043 * 179.69123 * 6 5 3 8 8 N 1.34773 * 120.00064 * 359.96442 * 6 5 3 9 9 C 1.46505 * 120.00095 * 179.72528 * 8 6 5 10 10 H 1.08994 * 109.47052 * 35.00248 * 9 8 6 11 11 C 1.52999 * 109.47125 * 274.99839 * 9 8 6 12 12 C 1.50696 * 109.46982 * 155.00326 * 9 8 6 13 13 H 1.08007 * 120.00305 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00085 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99960 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00297 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46857 * 120.00451 * 16 14 12 19 19 H 1.48497 * 109.47398 * 240.00602 * 16 14 12 20 20 C 1.36332 * 108.31718 * 359.61731 * 5 3 2 21 21 C 1.50693 * 126.49696 * 180.20349 * 20 5 3 22 22 C 1.38286 * 125.80363 * 179.68421 * 2 1 3 23 23 C 1.47240 * 126.47768 * 0.06039 * 22 2 1 24 24 O 1.21532 * 119.99866 * 269.96957 * 23 22 2 25 25 O 1.34761 * 120.00099 * 89.97470 * 23 22 2 26 26 H 1.09002 * 109.47126 * 270.30963 * 1 2 3 27 27 H 1.08998 * 109.47261 * 30.31408 * 1 2 3 28 28 H 1.09000 * 109.46980 * 150.31566 * 1 2 3 29 29 H 0.97000 * 120.00112 * 359.72963 * 8 6 5 30 30 H 1.08995 * 109.47220 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47796 * 300.00819 * 11 9 8 32 32 H 1.09002 * 109.46874 * 60.00140 * 11 9 8 33 33 H 0.97000 * 120.00330 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.47088 * 90.00229 * 21 20 5 35 35 H 1.09004 * 109.47327 * 210.00321 * 21 20 5 36 36 H 1.09005 * 109.47581 * 330.00611 * 21 20 5 37 37 H 0.96700 * 116.99804 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0885 0.0000 4 1 1.9794 2.0067 -0.0004 5 6 3.6129 0.6957 -0.0025 6 6 4.7762 1.5912 -0.0057 7 8 5.9012 1.1274 -0.0021 8 7 4.5982 2.9272 -0.0072 9 6 5.7591 3.8209 -0.0043 10 1 6.5622 3.3751 -0.5911 11 6 6.2356 4.0334 1.4340 12 6 5.3734 5.1472 -0.6068 13 1 4.3645 5.3083 -0.9572 14 6 6.3083 6.1552 -0.7107 15 7 7.5369 5.9590 -0.2845 16 14 5.8304 7.7991 -1.4581 17 1 4.4005 7.7644 -1.8573 18 1 6.0388 8.8769 -0.4579 19 1 6.6719 8.0631 -2.6528 20 6 3.6546 -0.6670 0.0046 21 6 4.8928 -1.5259 0.0091 22 6 2.3160 -1.1215 0.0062 23 6 1.8679 -2.5241 0.0127 24 8 1.6826 -3.0979 1.0678 25 8 1.6633 -3.1715 -1.1514 26 1 -0.3633 0.0056 1.0277 27 1 -0.3634 0.8871 -0.5187 28 1 -0.3633 -0.8928 -0.5089 29 1 3.7015 3.2970 -0.0101 30 1 7.0995 4.6979 1.4361 31 1 5.4324 4.4791 2.0208 32 1 6.5146 3.0740 1.8697 33 1 8.1947 6.6682 -0.3572 34 1 5.1913 -1.7276 1.0379 35 1 4.6842 -2.4669 -0.5000 36 1 5.6988 -1.0043 -0.5073 37 1 1.3690 -4.0910 -1.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599950618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:07 Heat of formation + Delta-G solvation = -99.202433 kcal Electronic energy + Delta-G solvation = -21661.290804 eV Core-core repulsion = 18210.800238 eV Total energy + Delta-G solvation = -3450.490566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71886 -39.78915 -38.47148 -36.05856 -34.99588 -33.06313 -32.53046 -31.71674 -29.10555 -28.18823 -26.26003 -25.32018 -24.15422 -21.83257 -20.37122 -19.76651 -19.27954 -18.37944 -17.96750 -16.44175 -16.11426 -15.52167 -15.27696 -15.21690 -14.84424 -14.22660 -13.94636 -13.44760 -13.40035 -13.10286 -13.02909 -12.83290 -12.48848 -12.34092 -12.17408 -11.77402 -11.68782 -11.44694 -11.15607 -11.02815 -10.83565 -10.80184 -10.37324 -10.31170 -9.27013 -9.12415 -8.91269 -8.63917 -8.25749 -7.92059 -6.19320 -4.29364 1.57271 2.05916 2.17550 2.82936 3.18713 3.26157 3.28194 3.29984 3.84454 3.96697 4.31237 4.50079 4.79901 5.10607 5.13254 5.20818 5.23861 5.35728 5.55401 5.58883 5.75427 5.97527 6.10492 6.30887 6.38973 6.55648 6.73722 6.82893 6.89411 7.06958 7.21443 7.32588 7.47881 7.61065 7.83261 7.83707 8.06900 8.50881 8.68224 8.94490 9.38157 10.86638 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.003860 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.467649 B = 7252.169851 C = 7796.036016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 N -0.520 5.520 4 H 0.423 0.577 5 C -0.036 4.036 6 C 0.574 3.426 7 O -0.534 6.534 8 N -0.706 5.706 9 C 0.265 3.735 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.881 5.881 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.039 4.039 21 C -0.093 4.093 22 C -0.219 4.219 23 C 0.570 3.430 24 O -0.510 6.510 25 O -0.510 6.510 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.382 0.618 30 H 0.092 0.908 31 H 0.026 0.974 32 H 0.016 0.984 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 -11.767 -0.725 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 N -0.115 5.115 4 H 0.262 0.738 5 C -0.148 4.148 6 C 0.359 3.641 7 O -0.411 6.411 8 N -0.354 5.354 9 C 0.164 3.836 10 H 0.070 0.930 11 C -0.206 4.206 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.518 5.518 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.046 4.046 21 C -0.150 4.150 22 C -0.227 4.227 23 C 0.412 3.588 24 O -0.397 6.397 25 O -0.321 6.321 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.213 0.787 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.020 -11.523 -0.439 17.392 hybrid contribution -1.091 0.990 -0.306 1.505 sum -14.111 -10.533 -0.745 17.624 Atomic orbital electron populations 1.20515 0.86885 1.04142 1.03686 1.20416 0.93325 0.85191 1.03340 1.41587 1.05725 1.08568 1.55643 0.73839 1.20322 0.83109 0.94218 1.17161 1.17024 0.86790 0.82301 0.77983 1.90778 1.23083 1.75783 1.51492 1.46476 1.11431 1.05083 1.72370 1.18812 0.83258 0.87344 0.94198 0.92969 1.22086 1.02171 0.99192 0.97175 1.21210 0.97489 0.97187 1.41590 0.92131 1.24883 0.94768 0.98885 0.95082 1.69906 1.02859 1.33464 1.45589 0.86384 0.78553 0.83158 0.78923 1.19811 1.20828 1.20786 1.19463 0.93197 0.91493 1.00482 1.20425 0.94443 0.97430 1.02745 1.18125 0.93720 0.88781 1.22055 1.20025 0.71934 0.86119 0.80685 1.90895 1.47669 1.68293 1.32872 1.84743 1.80024 1.31566 1.35765 0.89835 0.90402 0.89838 0.78682 0.88985 0.95504 0.96443 0.92512 0.91043 0.92464 0.88880 0.73508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.24 36.01 0.37 -0.36 16 2 C 0.10 1.17 7.21 -81.53 -0.59 0.58 16 3 N -0.52 -6.42 5.91 -5.61 -0.03 -6.45 16 4 H 0.42 4.00 8.13 -40.82 -0.33 3.66 16 5 C -0.04 -0.60 6.99 -82.41 -0.58 -1.17 16 6 C 0.57 11.52 7.76 -12.80 -0.10 11.42 16 7 O -0.53 -12.46 14.35 5.20 0.07 -12.39 16 8 N -0.71 -14.22 5.07 -56.20 -0.28 -14.50 16 9 C 0.27 6.56 2.56 -69.08 -0.18 6.38 16 10 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 12 C -0.54 -13.77 8.73 -34.44 -0.30 -14.08 16 13 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.88 -24.29 11.32 55.43 0.63 -23.67 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.04 -0.63 6.21 -104.12 -0.65 -1.28 16 21 C -0.09 -1.44 9.63 36.00 0.35 -1.09 16 22 C -0.22 -3.10 6.01 -105.03 -0.63 -3.74 16 23 C 0.57 7.49 7.51 34.39 0.26 7.75 16 24 O -0.51 -7.88 17.90 -19.29 -0.35 -8.22 16 25 O -0.51 -5.05 13.44 -40.66 -0.55 -5.60 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 29 H 0.38 6.42 7.62 -40.82 -0.31 6.10 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.09 1.58 6.41 -51.93 -0.33 1.25 16 37 H 0.41 1.95 9.11 45.56 0.42 2.36 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -33.39 323.89 -6.20 -39.58 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.75 Total: 8.43 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.79 Total: 2.85 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.31 Total: -44.62 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.82 Total: -26.21 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.39 -6.20 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.620 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds