Wall clock time and date at job start Tue Mar 31 2020 02:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34218 * 125.80535 * 2 1 4 4 H 0.97005 * 125.37782 * 359.97438 * 3 2 1 5 5 C 1.37788 * 109.23882 * 180.11001 * 3 2 1 6 6 C 1.46813 * 125.84273 * 179.88302 * 5 3 2 7 7 O 1.21683 * 120.00043 * 179.69123 * 6 5 3 8 8 N 1.34773 * 120.00064 * 359.96442 * 6 5 3 9 9 C 1.46505 * 120.00095 * 179.72528 * 8 6 5 10 10 H 1.08994 * 109.47052 * 35.00248 * 9 8 6 11 11 C 1.52999 * 109.47125 * 274.99839 * 9 8 6 12 12 C 1.50696 * 109.46982 * 155.00326 * 9 8 6 13 13 H 1.08007 * 120.00305 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00085 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99960 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00297 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46857 * 120.00451 * 16 14 12 19 19 H 1.48497 * 109.47398 * 240.00602 * 16 14 12 20 20 C 1.36332 * 108.31718 * 359.61731 * 5 3 2 21 21 C 1.50693 * 126.49696 * 180.20349 * 20 5 3 22 22 C 1.38286 * 125.80363 * 179.68421 * 2 1 3 23 23 C 1.47240 * 126.47768 * 0.06039 * 22 2 1 24 24 O 1.21532 * 119.99866 * 269.96957 * 23 22 2 25 25 O 1.34761 * 120.00099 * 89.97470 * 23 22 2 26 26 H 1.09002 * 109.47126 * 270.30963 * 1 2 3 27 27 H 1.08998 * 109.47261 * 30.31408 * 1 2 3 28 28 H 1.09000 * 109.46980 * 150.31566 * 1 2 3 29 29 H 0.97000 * 120.00112 * 359.72963 * 8 6 5 30 30 H 1.08995 * 109.47220 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47796 * 300.00819 * 11 9 8 32 32 H 1.09002 * 109.46874 * 60.00140 * 11 9 8 33 33 H 0.97000 * 120.00330 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.47088 * 90.00229 * 21 20 5 35 35 H 1.09004 * 109.47327 * 210.00321 * 21 20 5 36 36 H 1.09005 * 109.47581 * 330.00611 * 21 20 5 37 37 H 0.96700 * 116.99804 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0885 0.0000 4 1 1.9794 2.0067 -0.0004 5 6 3.6129 0.6957 -0.0025 6 6 4.7762 1.5912 -0.0057 7 8 5.9012 1.1274 -0.0021 8 7 4.5982 2.9272 -0.0072 9 6 5.7591 3.8209 -0.0043 10 1 6.5622 3.3751 -0.5911 11 6 6.2356 4.0334 1.4340 12 6 5.3734 5.1472 -0.6068 13 1 4.3645 5.3083 -0.9572 14 6 6.3083 6.1552 -0.7107 15 7 7.5369 5.9590 -0.2845 16 14 5.8304 7.7991 -1.4581 17 1 4.4005 7.7644 -1.8573 18 1 6.0388 8.8769 -0.4579 19 1 6.6719 8.0631 -2.6528 20 6 3.6546 -0.6670 0.0046 21 6 4.8928 -1.5259 0.0091 22 6 2.3160 -1.1215 0.0062 23 6 1.8679 -2.5241 0.0127 24 8 1.6826 -3.0979 1.0678 25 8 1.6633 -3.1715 -1.1514 26 1 -0.3633 0.0056 1.0277 27 1 -0.3634 0.8871 -0.5187 28 1 -0.3633 -0.8928 -0.5089 29 1 3.7015 3.2970 -0.0101 30 1 7.0995 4.6979 1.4361 31 1 5.4324 4.4791 2.0208 32 1 6.5146 3.0740 1.8697 33 1 8.1947 6.6682 -0.3572 34 1 5.1913 -1.7276 1.0379 35 1 4.6842 -2.4669 -0.5000 36 1 5.6988 -1.0043 -0.5073 37 1 1.3690 -4.0910 -1.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599950618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:06 Heat of formation + Delta-G solvation = -123.997642 kcal Electronic energy + Delta-G solvation = -21662.366005 eV Core-core repulsion = 18210.800238 eV Total energy + Delta-G solvation = -3451.565767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.82945 -40.82710 -40.03516 -36.97953 -36.82483 -34.56897 -33.96478 -32.84415 -30.88018 -29.20389 -27.53987 -27.29875 -25.27815 -23.33611 -21.86090 -20.96725 -20.62172 -19.71484 -18.93788 -18.16585 -17.23157 -17.06218 -16.63989 -16.46228 -16.26891 -15.68790 -15.32114 -14.78202 -14.54557 -14.38278 -14.20378 -14.06927 -13.80000 -13.71502 -13.24257 -13.16648 -13.00233 -12.88505 -12.76967 -12.67814 -12.46611 -12.29875 -12.12411 -11.86196 -11.12223 -10.92223 -10.62312 -10.02388 -9.91198 -9.20046 -8.18847 -6.36746 0.38101 1.06209 1.08801 1.44656 1.45770 1.57267 1.83927 2.20810 2.33958 2.39822 2.60751 3.12284 3.65139 3.85312 3.97354 4.15105 4.44363 4.53125 4.63434 4.69225 4.73122 4.73799 4.89939 4.95963 5.03342 5.06772 5.17658 5.38818 5.43430 5.54787 5.55552 5.59694 5.69090 5.88030 6.06546 6.29394 6.69196 6.85725 7.02765 7.27016 7.42460 8.87779 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.003860 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.467649 B = 7252.169851 C = 7796.036016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.133 3.867 3 N -0.506 5.506 4 H 0.437 0.563 5 C -0.065 4.065 6 C 0.573 3.427 7 O -0.577 6.577 8 N -0.700 5.700 9 C 0.272 3.728 10 H 0.003 0.997 11 C -0.135 4.135 12 C -0.547 4.547 13 H 0.076 0.924 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.973 3.027 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.285 1.285 20 C -0.047 4.047 21 C -0.092 4.092 22 C -0.249 4.249 23 C 0.581 3.419 24 O -0.538 6.538 25 O -0.502 6.502 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.400 0.600 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 -11.531 -1.306 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.009 3.991 3 N -0.103 5.103 4 H 0.279 0.721 5 C -0.176 4.176 6 C 0.361 3.639 7 O -0.458 6.458 8 N -0.349 5.349 9 C 0.169 3.831 10 H 0.021 0.979 11 C -0.193 4.193 12 C -0.585 4.585 13 H 0.094 0.906 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.798 3.202 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.211 1.211 20 C -0.055 4.055 21 C -0.149 4.149 22 C -0.256 4.256 23 C 0.424 3.576 24 O -0.428 6.428 25 O -0.315 6.315 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -16.535 -11.292 -1.039 20.049 hybrid contribution -0.074 0.788 -0.159 0.807 sum -16.608 -10.504 -1.198 19.688 Atomic orbital electron populations 1.20764 0.83238 1.06089 1.05232 1.21137 0.95120 0.83962 0.98915 1.41508 1.04194 1.09697 1.54907 0.72107 1.19611 0.83598 0.93559 1.20826 1.17438 0.87453 0.82307 0.76672 1.90750 1.25275 1.76467 1.53280 1.46126 1.11118 1.04909 1.72723 1.18406 0.83606 0.87686 0.93423 0.97874 1.21911 1.01669 0.98395 0.97365 1.21539 0.98179 0.97305 1.41462 0.90641 1.25798 0.94609 1.02664 0.95433 1.70057 1.04034 1.34643 1.46737 0.85276 0.78805 0.78392 0.77715 1.18179 1.20527 1.21097 1.19678 0.94322 0.91613 0.99837 1.20376 0.93937 0.98054 1.02531 1.18342 0.93150 0.90368 1.23765 1.19759 0.71277 0.85695 0.80838 1.90889 1.49147 1.68790 1.33981 1.84683 1.79443 1.33372 1.34027 0.88291 0.87598 0.88770 0.76541 0.91303 0.94041 0.96919 0.92507 0.91237 0.90557 0.91185 0.70771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.24 71.24 0.73 -0.30 16 2 C 0.13 2.72 7.21 42.21 0.30 3.03 16 3 N -0.51 -11.36 5.91 -171.65 -1.01 -12.37 16 4 H 0.44 6.99 8.13 -92.70 -0.75 6.23 16 5 C -0.06 -2.11 6.99 40.01 0.28 -1.83 16 6 C 0.57 23.64 7.76 86.49 0.67 24.31 16 7 O -0.58 -28.48 14.35 -4.29 -0.06 -28.54 16 8 N -0.70 -28.44 5.07 -449.95 -2.28 -30.72 16 9 C 0.27 13.84 2.56 44.24 0.11 13.95 16 10 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 11 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 12 C -0.55 -28.03 8.73 25.60 0.22 -27.81 16 13 H 0.08 3.56 7.74 -2.91 -0.02 3.53 16 14 C 0.02 0.80 5.30 84.65 0.45 1.25 16 15 N -0.92 -51.71 11.32 21.45 0.24 -51.47 16 16 Si 0.97 40.81 29.54 68.60 2.03 42.84 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 C -0.05 -1.49 6.21 -19.54 -0.12 -1.61 16 21 C -0.09 -2.90 9.63 71.23 0.69 -2.21 16 22 C -0.25 -6.60 6.01 -20.13 -0.12 -6.72 16 23 C 0.58 14.01 7.51 70.19 0.53 14.54 16 24 O -0.54 -15.70 17.90 19.73 0.35 -15.35 16 25 O -0.50 -8.53 13.44 -56.72 -0.76 -9.29 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.90 7.93 -2.39 -0.02 0.88 16 29 H 0.40 13.03 7.62 -92.71 -0.71 12.33 16 30 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.02 8.05 -2.39 -0.02 2.01 16 36 H 0.07 2.53 6.41 -2.38 -0.02 2.51 16 37 H 0.43 2.81 9.11 -74.06 -0.67 2.14 16 Total: -1.00 -74.78 323.89 1.92 -72.86 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.99 Total: 21.53 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.41 Total: 10.51 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.05 Total: -94.56 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.47 Total: -53.18 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -74.78 1.92 -72.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.136 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds