Wall clock time and date at job start Tue Mar 31 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34627 * 125.90023 * 2 1 4 4 H 0.96993 * 124.80377 * 0.05775 * 3 2 1 5 5 C 1.36426 * 110.38056 * 180.02562 * 3 2 1 6 6 C 1.50699 * 125.45723 * 180.02562 * 5 3 2 7 7 N 1.46902 * 109.47319 * 84.99519 * 6 5 3 8 8 C 1.47957 * 110.99872 * 170.00258 * 7 6 5 9 9 C 1.53937 * 86.17920 * 222.41747 * 8 7 6 10 10 O 1.42903 * 113.73709 * 269.36255 * 9 8 7 11 11 C 1.50704 * 113.73281 * 138.07712 * 9 8 7 12 12 H 1.07996 * 120.00019 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99820 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00101 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99714 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47424 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47111 * 120.00219 * 15 13 11 18 18 H 1.48506 * 109.47096 * 240.00282 * 15 13 11 19 19 C 1.47959 * 110.99905 * 70.64321 * 7 6 5 20 20 C 1.34435 * 109.09003 * 0.25915 * 5 3 2 21 21 C 1.37855 * 125.89362 * 180.02562 * 2 1 3 22 22 C 1.47110 * 127.02315 * 359.97438 * 21 2 1 23 23 O 1.21545 * 120.00098 * 0.02562 * 22 21 2 24 24 O 1.34783 * 119.99854 * 179.97438 * 22 21 2 25 25 H 1.08997 * 109.46750 * 89.97472 * 1 2 3 26 26 H 1.09003 * 109.46777 * 209.97495 * 1 2 3 27 27 H 1.08998 * 109.46746 * 329.97592 * 1 2 3 28 28 H 1.09007 * 109.47020 * 324.99982 * 6 5 3 29 29 H 1.09001 * 109.47571 * 204.99661 * 6 5 3 30 30 H 1.09000 * 113.75975 * 108.10133 * 8 7 6 31 31 H 1.09001 * 113.86215 * 336.74742 * 8 7 6 32 32 H 0.96696 * 113.99962 * 179.97438 * 10 9 8 33 33 H 0.97008 * 120.00029 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.75954 * 23.26493 * 19 7 6 35 35 H 1.08999 * 113.75873 * 251.90469 * 19 7 6 36 36 H 1.07998 * 126.81900 * 179.70858 * 20 5 3 37 37 H 0.96699 * 116.99980 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2965 1.0905 0.0000 4 1 1.9759 2.0060 0.0008 5 6 3.6110 0.7255 -0.0006 6 6 4.7817 1.6743 -0.0002 7 7 5.0865 2.0756 1.3797 8 6 6.3680 2.8119 1.4470 9 6 6.6591 1.9836 2.7115 10 8 6.2127 2.6022 3.9198 11 6 8.0781 1.4830 2.7953 12 1 8.7806 1.7171 2.0092 13 6 8.4796 0.7269 3.8761 14 7 7.6243 0.4422 4.8336 15 14 10.2387 0.1070 3.9803 16 1 10.9954 0.5615 2.7861 17 1 10.8811 0.6443 5.2067 18 1 10.2383 -1.3772 4.0313 19 6 5.6702 0.9502 2.1425 20 6 3.6947 -0.6162 -0.0067 21 6 2.3153 -1.1168 -0.0005 22 6 1.8831 -2.5230 -0.0006 23 8 0.6984 -2.7947 -0.0007 24 8 2.8009 -3.5100 -0.0016 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.5338 2.5576 -0.5890 29 1 5.6504 1.1799 -0.4350 30 1 6.2521 3.8788 1.6380 31 1 7.0428 2.5994 0.6178 32 1 6.3933 2.0849 4.7165 33 1 7.9069 -0.0894 5.5942 34 1 6.1397 0.1917 1.5160 35 1 4.9966 0.5295 2.8891 36 1 4.5979 -1.2083 -0.0131 37 1 2.4689 -4.4182 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599962127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:35 Heat of formation + Delta-G solvation = -65.794434 kcal Electronic energy + Delta-G solvation = -21838.275235 eV Core-core repulsion = 18389.233348 eV Total energy + Delta-G solvation = -3449.041886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29421 -39.50283 -38.83832 -35.85538 -34.44712 -32.15489 -31.96294 -31.09403 -29.29190 -26.67811 -25.40080 -24.92895 -23.45094 -21.92961 -20.32321 -19.54229 -18.61814 -17.80273 -17.32953 -16.50331 -15.58348 -15.56247 -15.15237 -15.05956 -14.50355 -14.16380 -13.97375 -13.76939 -13.35531 -12.97142 -12.90252 -12.56495 -12.36391 -12.01450 -11.97133 -11.48266 -11.40270 -11.37157 -11.10436 -10.80964 -10.69487 -10.42314 -10.29536 -10.04204 -9.38954 -8.80407 -8.67512 -8.30343 -7.95127 -7.84478 -6.27247 -4.37570 1.55153 2.47201 3.01167 3.18360 3.27390 3.30641 3.41081 3.55728 4.24854 4.73505 4.80733 4.92385 5.04775 5.10417 5.35204 5.45899 5.55879 5.65906 5.77214 5.88880 5.89937 5.96670 6.01737 6.28963 6.30540 6.40357 6.64023 6.65529 6.85210 7.01253 7.06884 7.14573 7.33722 7.48959 7.75191 7.89214 7.97741 8.15558 8.64493 9.32909 9.63722 10.78499 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.004514 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.886924 B = 6201.933405 C = 6990.432459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.116 3.884 3 N -0.531 5.531 4 H 0.418 0.582 5 C 0.035 3.965 6 C 0.081 3.919 7 N -0.479 5.479 8 C 0.007 3.993 9 C 0.243 3.757 10 O -0.574 6.574 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.005 4.005 20 C -0.136 4.136 21 C -0.235 4.235 22 C 0.562 3.438 23 O -0.539 6.539 24 O -0.511 6.511 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.390 0.610 33 H 0.271 0.729 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -1.826 -10.070 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.004 4.004 3 N -0.126 5.126 4 H 0.255 0.745 5 C -0.074 4.074 6 C -0.048 4.048 7 N -0.202 5.202 8 C -0.121 4.121 9 C 0.202 3.798 10 O -0.386 6.386 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.134 4.134 20 C -0.159 4.159 21 C -0.243 4.243 22 C 0.409 3.591 23 O -0.431 6.431 24 O -0.321 6.321 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.560 -0.668 -10.094 14.623 hybrid contribution 1.452 -1.513 0.101 2.100 sum -9.108 -2.181 -9.992 13.695 Atomic orbital electron populations 1.20583 0.86899 1.04381 1.03364 1.20474 0.93337 0.85457 1.01156 1.41473 1.05860 1.08403 1.56848 0.74462 1.20141 0.83989 0.94579 1.08661 1.21199 0.93031 0.95877 0.94717 1.68683 1.28757 1.15066 1.07709 1.24176 0.89295 0.99626 0.99013 1.19756 0.90698 0.86915 0.82446 1.86024 1.83765 1.50866 1.17899 1.21679 0.96329 1.32683 1.06963 0.91579 1.25053 0.98090 0.94780 0.95117 1.69350 1.34765 1.39187 1.10428 0.86373 0.83874 0.78535 0.78255 1.19590 1.20698 1.20706 1.24668 0.97414 0.94391 0.96927 1.21841 0.95689 0.92457 1.05936 1.19198 0.93875 0.88446 1.22793 1.19830 0.82670 0.85440 0.71133 1.90816 1.18455 1.84743 1.49117 1.84636 1.42178 1.19248 1.86077 0.90373 0.88301 0.91377 0.90840 0.91925 0.90619 0.91517 0.75528 0.91891 0.92017 0.91100 0.83345 0.73569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.90 36.01 0.36 -0.64 16 2 C 0.12 1.57 7.22 -81.50 -0.59 0.98 16 3 N -0.53 -6.90 5.89 -5.20 -0.03 -6.93 16 4 H 0.42 4.28 8.96 -40.82 -0.37 3.91 16 5 C 0.04 0.54 6.20 -81.89 -0.51 0.03 16 6 C 0.08 1.27 5.35 -4.98 -0.03 1.24 16 7 N -0.48 -9.44 6.25 -239.71 -1.50 -10.94 16 8 C 0.01 0.15 7.36 -2.77 -0.02 0.13 16 9 C 0.24 6.02 1.44 -90.84 -0.13 5.89 16 10 O -0.57 -15.37 13.49 -35.23 -0.48 -15.84 16 11 C -0.54 -14.07 8.62 -34.44 -0.30 -14.37 16 12 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 14 N -0.90 -23.94 11.08 55.43 0.61 -23.32 16 15 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.01 -0.11 6.72 -2.77 -0.02 -0.13 16 20 C -0.14 -2.18 10.71 -37.49 -0.40 -2.58 16 21 C -0.23 -3.65 6.33 -103.00 -0.65 -4.30 16 22 C 0.56 8.46 8.32 34.33 0.29 8.75 16 23 O -0.54 -8.67 15.66 -19.30 -0.30 -8.97 16 24 O -0.51 -6.49 13.33 -40.72 -0.54 -7.03 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.18 6.51 -51.93 -0.34 0.84 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 32 H 0.39 10.68 6.42 45.56 0.29 10.97 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 1.38 7.73 -51.93 -0.40 0.97 16 35 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.41 3.07 9.11 45.56 0.42 3.48 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -31.00 319.20 -7.82 -38.83 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -3.28 Total: 17.49 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.10 Total: -3.23 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.92 Total: -41.19 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.32 Total: -31.85 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.00 -7.82 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599962127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.967 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds