Wall clock time and date at job start Tue Mar 31 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34627 * 125.90023 * 2 1 4 4 H 0.96993 * 124.80377 * 0.05775 * 3 2 1 5 5 C 1.36426 * 110.38056 * 180.02562 * 3 2 1 6 6 C 1.50699 * 125.45723 * 180.02562 * 5 3 2 7 7 N 1.46902 * 109.47319 * 84.99519 * 6 5 3 8 8 C 1.47957 * 110.99872 * 170.00258 * 7 6 5 9 9 C 1.53937 * 86.17920 * 222.41747 * 8 7 6 10 10 O 1.42903 * 113.73709 * 269.36255 * 9 8 7 11 11 C 1.50704 * 113.73281 * 138.07712 * 9 8 7 12 12 H 1.07996 * 120.00019 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99820 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00101 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99714 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47424 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47111 * 120.00219 * 15 13 11 18 18 H 1.48506 * 109.47096 * 240.00282 * 15 13 11 19 19 C 1.47959 * 110.99905 * 70.64321 * 7 6 5 20 20 C 1.34435 * 109.09003 * 0.25915 * 5 3 2 21 21 C 1.37855 * 125.89362 * 180.02562 * 2 1 3 22 22 C 1.47110 * 127.02315 * 359.97438 * 21 2 1 23 23 O 1.21545 * 120.00098 * 0.02562 * 22 21 2 24 24 O 1.34783 * 119.99854 * 179.97438 * 22 21 2 25 25 H 1.08997 * 109.46750 * 89.97472 * 1 2 3 26 26 H 1.09003 * 109.46777 * 209.97495 * 1 2 3 27 27 H 1.08998 * 109.46746 * 329.97592 * 1 2 3 28 28 H 1.09007 * 109.47020 * 324.99982 * 6 5 3 29 29 H 1.09001 * 109.47571 * 204.99661 * 6 5 3 30 30 H 1.09000 * 113.75975 * 108.10133 * 8 7 6 31 31 H 1.09001 * 113.86215 * 336.74742 * 8 7 6 32 32 H 0.96696 * 113.99962 * 179.97438 * 10 9 8 33 33 H 0.97008 * 120.00029 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.75954 * 23.26493 * 19 7 6 35 35 H 1.08999 * 113.75873 * 251.90469 * 19 7 6 36 36 H 1.07998 * 126.81900 * 179.70858 * 20 5 3 37 37 H 0.96699 * 116.99980 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2965 1.0905 0.0000 4 1 1.9759 2.0060 0.0008 5 6 3.6110 0.7255 -0.0006 6 6 4.7817 1.6743 -0.0002 7 7 5.0865 2.0756 1.3797 8 6 6.3680 2.8119 1.4470 9 6 6.6591 1.9836 2.7115 10 8 6.2127 2.6022 3.9198 11 6 8.0781 1.4830 2.7953 12 1 8.7806 1.7171 2.0092 13 6 8.4796 0.7269 3.8761 14 7 7.6243 0.4422 4.8336 15 14 10.2387 0.1070 3.9803 16 1 10.9954 0.5615 2.7861 17 1 10.8811 0.6443 5.2067 18 1 10.2383 -1.3772 4.0313 19 6 5.6702 0.9502 2.1425 20 6 3.6947 -0.6162 -0.0067 21 6 2.3153 -1.1168 -0.0005 22 6 1.8831 -2.5230 -0.0006 23 8 0.6984 -2.7947 -0.0007 24 8 2.8009 -3.5100 -0.0016 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.5338 2.5576 -0.5890 29 1 5.6504 1.1799 -0.4350 30 1 6.2521 3.8788 1.6380 31 1 7.0428 2.5994 0.6178 32 1 6.3933 2.0849 4.7165 33 1 7.9069 -0.0894 5.5942 34 1 6.1397 0.1917 1.5160 35 1 4.9966 0.5295 2.8891 36 1 4.5979 -1.2083 -0.0131 37 1 2.4689 -4.4182 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599962127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:34 Heat of formation + Delta-G solvation = -91.375096 kcal Electronic energy + Delta-G solvation = -21839.384495 eV Core-core repulsion = 18389.233348 eV Total energy + Delta-G solvation = -3450.151147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.42150 -40.76294 -40.37612 -36.94895 -36.28523 -34.09310 -33.23511 -32.21601 -30.63131 -28.27528 -26.99639 -26.47927 -24.72815 -23.35233 -21.49443 -20.64452 -20.42834 -19.26352 -18.90026 -17.70041 -17.06548 -16.89453 -16.65991 -16.54400 -16.02587 -15.70051 -15.28584 -15.11715 -14.70201 -14.16587 -14.09868 -13.89175 -13.70856 -13.44369 -13.37422 -13.23720 -12.83718 -12.72329 -12.51474 -12.47465 -12.27663 -12.15825 -11.91883 -11.49423 -11.20203 -10.63707 -10.11705 -9.94534 -9.60873 -9.09548 -8.23020 -6.40978 0.45119 1.27670 1.41894 1.45327 1.55932 1.99998 2.25821 2.38560 2.53514 2.98414 3.23132 3.67451 3.87954 4.02309 4.14246 4.25113 4.31177 4.44836 4.49356 4.57523 4.60317 4.68486 4.70918 4.84566 4.94721 5.04140 5.19342 5.23201 5.42497 5.46492 5.65418 5.70491 5.77373 5.93230 5.99473 6.28954 6.51419 6.65280 7.14836 7.32546 7.54491 8.81608 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.004514 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.886924 B = 6201.933405 C = 6990.432459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.129 3.871 3 N -0.520 5.520 4 H 0.433 0.567 5 C 0.026 3.974 6 C 0.084 3.916 7 N -0.478 5.478 8 C 0.019 3.981 9 C 0.213 3.787 10 O -0.586 6.586 11 C -0.558 4.558 12 H 0.068 0.932 13 C 0.027 3.973 14 N -0.921 5.921 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.010 3.990 20 C -0.152 4.152 21 C -0.269 4.269 22 C 0.561 3.439 23 O -0.555 6.555 24 O -0.513 6.513 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.382 0.618 33 H 0.273 0.727 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.140 0.860 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 -1.296 -11.369 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.008 3.992 3 N -0.117 5.117 4 H 0.273 0.727 5 C -0.083 4.083 6 C -0.045 4.045 7 N -0.201 5.201 8 C -0.109 4.109 9 C 0.172 3.828 10 O -0.398 6.398 11 C -0.596 4.596 12 H 0.086 0.914 13 C -0.173 4.173 14 N -0.562 5.562 15 Si 0.790 3.210 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.120 4.120 20 C -0.176 4.176 21 C -0.277 4.277 22 C 0.409 3.591 23 O -0.449 6.449 24 O -0.326 6.326 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.158 0.842 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.812 -0.128 -11.414 15.722 hybrid contribution 1.489 -1.696 0.485 2.308 sum -9.323 -1.824 -10.929 14.480 Atomic orbital electron populations 1.20666 0.84586 1.04929 1.04711 1.20948 0.94641 0.84912 0.98713 1.41442 1.05006 1.09175 1.56033 0.72717 1.20023 0.84819 0.94182 1.09294 1.21232 0.93429 0.97340 0.92492 1.68559 1.27893 1.13433 1.10199 1.24097 0.89966 0.99424 0.97395 1.20205 0.90700 0.88971 0.82961 1.86007 1.84025 1.51301 1.18434 1.21980 0.97282 1.32995 1.07301 0.91417 1.25802 1.01704 0.94950 0.94841 1.69437 1.36344 1.39603 1.10844 0.85400 0.79459 0.77849 0.78270 1.18889 1.20565 1.20510 1.24322 0.96378 0.94534 0.96725 1.21914 0.95956 0.93117 1.06588 1.19491 0.94081 0.89461 1.24642 1.19833 0.82609 0.85771 0.70857 1.90800 1.18927 1.85061 1.50131 1.84593 1.41928 1.20501 1.85598 0.88501 0.89702 0.88789 0.87777 0.91528 0.90172 0.89676 0.76430 0.91765 0.92196 0.93994 0.84170 0.71178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.90 71.24 0.71 -1.00 16 2 C 0.13 3.27 7.22 42.04 0.30 3.58 16 3 N -0.52 -12.41 5.89 -170.36 -1.00 -13.41 16 4 H 0.43 7.58 8.96 -92.71 -0.83 6.75 16 5 C 0.03 0.77 6.20 40.97 0.25 1.02 16 6 C 0.08 2.45 5.35 85.56 0.46 2.90 16 7 N -0.48 -18.22 6.25 -915.52 -5.72 -23.95 16 8 C 0.02 0.78 7.36 86.41 0.64 1.42 16 9 C 0.21 10.53 1.44 -10.89 -0.02 10.51 16 10 O -0.59 -31.90 13.49 -148.98 -2.01 -33.91 16 11 C -0.56 -29.10 8.62 25.60 0.22 -28.88 16 12 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 13 C 0.03 1.38 5.39 84.66 0.46 1.84 16 14 N -0.92 -49.84 11.08 21.45 0.24 -49.61 16 15 Si 0.97 41.21 29.54 68.60 2.03 43.23 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 19 C 0.01 0.45 6.72 86.40 0.58 1.03 16 20 C -0.15 -4.83 10.71 23.62 0.25 -4.58 16 21 C -0.27 -8.20 6.33 -18.82 -0.12 -8.32 16 22 C 0.56 16.70 8.32 70.15 0.58 17.29 16 23 O -0.56 -17.56 15.66 19.69 0.31 -17.25 16 24 O -0.51 -12.83 13.33 -56.94 -0.76 -13.59 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.90 6.51 -2.39 -0.02 1.88 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.07 1.93 7.69 -2.39 -0.02 1.92 16 30 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.09 3.07 7.75 -2.39 -0.02 3.05 16 32 H 0.38 21.54 6.42 -74.06 -0.48 21.07 16 33 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 34 H 0.06 2.70 7.73 -2.38 -0.02 2.68 16 35 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.43 6.12 9.11 -74.06 -0.67 5.44 16 Total: -1.00 -66.36 319.20 -3.46 -69.82 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.85 Total: 41.85 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 4.32 Total: -3.19 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -6.49 Total: -86.96 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -2.46 Total: -64.75 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -66.36 -3.46 -69.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599962127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.555 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds