Wall clock time and date at job start Tue Mar 31 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39805 * 126.51504 * 2 1 4 4 C 1.35481 * 107.84353 * 179.73938 * 3 2 1 5 5 C 1.50703 * 125.50588 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47348 * 95.00060 * 5 4 3 7 7 C 1.47484 * 111.00042 * 74.02668 * 6 5 4 8 8 C 1.53517 * 87.93215 * 138.70693 * 7 6 5 9 9 O 1.42898 * 114.17016 * 87.62054 * 8 7 6 10 10 C 1.50693 * 114.16927 * 220.33037 * 8 7 6 11 11 H 1.08003 * 119.99896 * 93.84332 * 10 8 7 12 12 C 1.37874 * 119.99973 * 273.83862 * 10 8 7 13 13 N 1.31513 * 119.99998 * 0.02562 * 12 10 8 14 14 Si 1.86808 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47256 * 59.99616 * 14 12 10 16 16 H 1.48494 * 109.47190 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46681 * 299.99861 * 14 12 10 18 18 C 1.47473 * 111.00148 * 169.99942 * 6 5 4 19 19 N 1.34954 * 108.98753 * 0.02562 * 4 3 2 20 20 H 0.97007 * 125.63584 * 180.02562 * 19 4 3 21 21 C 1.37702 * 108.72842 * 359.97438 * 19 4 3 22 22 C 1.46496 * 126.26086 * 180.02562 * 21 19 4 23 23 O 1.21625 * 119.99720 * 180.02562 * 22 21 19 24 24 O 1.34896 * 120.00244 * 359.97438 * 22 21 19 25 25 H 1.08994 * 109.47229 * 90.02711 * 1 2 3 26 26 H 1.09001 * 109.46901 * 210.02778 * 1 2 3 27 27 H 1.08998 * 109.47474 * 330.01926 * 1 2 3 28 28 H 1.07997 * 126.07674 * 359.73701 * 3 2 1 29 29 H 1.09003 * 109.47094 * 214.99891 * 5 4 3 30 30 H 1.09000 * 109.47003 * 334.99912 * 5 4 3 31 31 H 1.09004 * 113.47331 * 253.47211 * 7 6 5 32 32 H 1.08990 * 113.47589 * 23.93922 * 7 6 5 33 33 H 0.96703 * 114.00062 * 86.16270 * 9 8 7 34 34 H 0.97008 * 119.99837 * 180.02562 * 13 12 10 35 35 H 1.08999 * 113.47982 * 336.06261 * 18 6 5 36 36 H 1.09000 * 113.47515 * 106.52956 * 18 6 5 37 37 H 0.96693 * 116.99562 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1236 0.0000 4 6 3.6223 0.6899 0.0059 5 6 4.8443 1.5719 0.0074 6 7 5.3072 1.7650 1.3881 7 6 5.9622 0.5472 1.9011 8 6 7.0213 1.4545 2.5429 9 8 6.6816 1.9145 3.8525 10 6 8.4293 0.9272 2.4407 11 1 9.0636 1.2363 1.6229 12 6 8.9078 0.0504 3.3910 13 7 8.1353 -0.3262 4.3865 14 14 10.6535 -0.6026 3.2646 15 1 11.6108 0.5318 3.3086 16 1 10.9216 -1.5216 4.3997 17 1 10.8154 -1.3376 1.9844 18 6 6.6282 2.4199 1.4159 19 7 3.6298 -0.6596 0.0090 20 1 4.4213 -1.2205 0.0136 21 6 2.3281 -1.1090 0.0056 22 6 1.8945 -2.5083 0.0079 23 8 0.7084 -2.7773 0.0040 24 8 2.8107 -3.4983 0.0133 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3634 0.8901 0.5135 28 1 2.0157 2.1541 -0.0040 29 1 5.6337 1.1001 -0.5778 30 1 4.5953 2.5384 -0.4308 31 1 5.3589 0.0028 2.6275 32 1 6.3595 -0.0957 1.1158 33 1 6.9303 1.3045 4.5605 34 1 8.4722 -0.9428 5.0553 35 1 7.2033 2.2767 0.5012 36 1 6.5893 3.4626 1.7313 37 1 2.4765 -4.4056 0.0150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600191731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:06 Heat of formation + Delta-G solvation = -62.812101 kcal Electronic energy + Delta-G solvation = -21894.200870 eV Core-core repulsion = 18445.288308 eV Total energy + Delta-G solvation = -3448.912563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50009 -39.70609 -39.03711 -36.15245 -34.52348 -32.58851 -32.14054 -31.13994 -28.34909 -27.05869 -26.00226 -25.01192 -23.32784 -21.95474 -20.25373 -19.23232 -18.73077 -18.47571 -17.49087 -17.24393 -15.85218 -15.34210 -15.17620 -15.11194 -14.39874 -14.17568 -13.84891 -13.68904 -13.47487 -12.94419 -12.83088 -12.60606 -12.25400 -12.13435 -12.07672 -11.69793 -11.63377 -11.46455 -11.10090 -10.89613 -10.77402 -10.54422 -10.41789 -10.12430 -9.42085 -8.75662 -8.68754 -8.38589 -8.05071 -7.98622 -6.35436 -4.46282 1.24143 2.70087 2.90308 3.14418 3.15413 3.21046 3.22739 3.30175 4.17488 4.75051 4.81299 4.96403 5.05315 5.24059 5.33857 5.47827 5.67323 5.76772 5.82229 5.84448 5.90323 6.00427 6.10981 6.15510 6.18819 6.33201 6.48780 6.58432 6.82993 6.90345 6.99029 7.03291 7.22872 7.45734 7.67324 7.79306 7.86104 7.90148 8.56141 9.24625 9.60116 10.70445 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.004540 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.446884 B = 6165.774081 C = 6971.188174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.058 4.058 3 C -0.202 4.202 4 C 0.100 3.900 5 C 0.073 3.927 6 N -0.462 5.462 7 C -0.024 4.024 8 C 0.250 3.750 9 O -0.569 6.569 10 C -0.538 4.538 11 H 0.067 0.933 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.003 3.997 19 N -0.519 5.519 20 H 0.422 0.578 21 C -0.063 4.063 22 C 0.556 3.444 23 O -0.514 6.514 24 O -0.521 6.521 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.146 0.854 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.391 0.609 34 H 0.273 0.727 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -2.112 -9.332 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.226 4.226 4 C -0.021 4.021 5 C -0.056 4.056 6 N -0.185 5.185 7 C -0.154 4.154 8 C 0.209 3.791 9 O -0.381 6.381 10 C -0.576 4.576 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.126 4.126 19 N -0.114 5.114 20 H 0.260 0.740 21 C -0.173 4.173 22 C 0.402 3.598 23 O -0.403 6.403 24 O -0.333 6.333 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -9.445 -1.253 -9.167 13.222 hybrid contribution 1.955 -2.249 -0.278 2.993 sum -7.490 -3.502 -9.445 12.553 Atomic orbital electron populations 1.20363 0.89239 1.03042 1.02112 1.19930 0.95649 0.90436 1.00655 1.20530 0.90586 0.98751 1.12775 1.20428 0.97051 0.82364 1.02216 1.21380 0.92163 0.97764 0.94276 1.69139 1.22349 1.13206 1.13785 1.24732 0.97713 0.93718 0.99199 1.19302 0.90567 0.87824 0.81451 1.86039 1.84687 1.50754 1.16616 1.21534 0.98297 1.26859 1.10953 0.91524 1.25068 0.98246 0.95076 0.94637 1.69287 1.36553 1.34360 1.13525 0.86447 0.83742 0.78839 0.77805 1.19831 1.20946 1.20069 1.24124 0.88552 1.00615 0.99285 1.41788 1.07338 1.06792 1.55451 0.73961 1.18893 0.84443 0.89804 1.24187 1.19516 0.83386 0.84478 0.72379 1.90898 1.17658 1.83805 1.47959 1.84619 1.42498 1.19854 1.86353 0.91470 0.90462 0.91529 0.83596 0.93384 0.88523 0.91299 0.92788 0.75350 0.91655 0.91568 0.90594 0.72752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.84 36.00 0.35 -0.77 16 2 C -0.06 -0.85 6.22 -104.13 -0.65 -1.50 16 3 C -0.20 -2.96 10.66 -39.98 -0.43 -3.38 16 4 C 0.10 1.53 6.25 -82.20 -0.51 1.02 16 5 C 0.07 1.13 5.36 -4.98 -0.03 1.10 16 6 N -0.46 -9.05 6.40 -246.07 -1.58 -10.63 16 7 C -0.02 -0.53 6.71 -7.54 -0.05 -0.58 16 8 C 0.25 6.10 1.57 -91.24 -0.14 5.96 16 9 O -0.57 -15.13 13.54 -35.23 -0.48 -15.61 16 10 C -0.54 -13.78 8.68 -34.44 -0.30 -14.07 16 11 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 12 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 13 N -0.90 -23.49 11.02 55.43 0.61 -22.88 16 14 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 C 0.00 0.06 7.12 -7.55 -0.05 0.00 16 19 N -0.52 -7.68 6.06 -5.82 -0.04 -7.72 16 20 H 0.42 5.84 8.96 -40.82 -0.37 5.47 16 21 C -0.06 -0.96 7.10 -81.99 -0.58 -1.54 16 22 C 0.56 7.91 8.30 34.06 0.28 8.19 16 23 O -0.51 -8.05 15.60 -19.36 -0.30 -8.35 16 24 O -0.52 -5.91 13.44 -41.03 -0.55 -6.46 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.03 6.49 -51.93 -0.34 0.70 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.05 1.12 7.66 -51.93 -0.40 0.72 16 33 H 0.39 10.61 6.34 45.56 0.29 10.90 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.41 2.65 9.11 45.56 0.42 3.07 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -29.78 318.87 -8.02 -37.80 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -3.27 Total: 18.17 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.20 Total: -3.83 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -1.00 Total: -41.23 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.33 Total: -30.42 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.78 -8.02 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600191731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.015 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds