Wall clock time and date at job start Tue Mar 31 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39805 * 126.51504 * 2 1 4 4 C 1.35481 * 107.84353 * 179.73938 * 3 2 1 5 5 C 1.50703 * 125.50588 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47348 * 95.00060 * 5 4 3 7 7 C 1.47484 * 111.00042 * 74.02668 * 6 5 4 8 8 C 1.53517 * 87.93215 * 138.70693 * 7 6 5 9 9 O 1.42898 * 114.17016 * 87.62054 * 8 7 6 10 10 C 1.50693 * 114.16927 * 220.33037 * 8 7 6 11 11 H 1.08003 * 119.99896 * 93.84332 * 10 8 7 12 12 C 1.37874 * 119.99973 * 273.83862 * 10 8 7 13 13 N 1.31513 * 119.99998 * 0.02562 * 12 10 8 14 14 Si 1.86808 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47256 * 59.99616 * 14 12 10 16 16 H 1.48494 * 109.47190 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46681 * 299.99861 * 14 12 10 18 18 C 1.47473 * 111.00148 * 169.99942 * 6 5 4 19 19 N 1.34954 * 108.98753 * 0.02562 * 4 3 2 20 20 H 0.97007 * 125.63584 * 180.02562 * 19 4 3 21 21 C 1.37702 * 108.72842 * 359.97438 * 19 4 3 22 22 C 1.46496 * 126.26086 * 180.02562 * 21 19 4 23 23 O 1.21625 * 119.99720 * 180.02562 * 22 21 19 24 24 O 1.34896 * 120.00244 * 359.97438 * 22 21 19 25 25 H 1.08994 * 109.47229 * 90.02711 * 1 2 3 26 26 H 1.09001 * 109.46901 * 210.02778 * 1 2 3 27 27 H 1.08998 * 109.47474 * 330.01926 * 1 2 3 28 28 H 1.07997 * 126.07674 * 359.73701 * 3 2 1 29 29 H 1.09003 * 109.47094 * 214.99891 * 5 4 3 30 30 H 1.09000 * 109.47003 * 334.99912 * 5 4 3 31 31 H 1.09004 * 113.47331 * 253.47211 * 7 6 5 32 32 H 1.08990 * 113.47589 * 23.93922 * 7 6 5 33 33 H 0.96703 * 114.00062 * 86.16270 * 9 8 7 34 34 H 0.97008 * 119.99837 * 180.02562 * 13 12 10 35 35 H 1.08999 * 113.47982 * 336.06261 * 18 6 5 36 36 H 1.09000 * 113.47515 * 106.52956 * 18 6 5 37 37 H 0.96693 * 116.99562 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1236 0.0000 4 6 3.6223 0.6899 0.0059 5 6 4.8443 1.5719 0.0074 6 7 5.3072 1.7650 1.3881 7 6 5.9622 0.5472 1.9011 8 6 7.0213 1.4545 2.5429 9 8 6.6816 1.9145 3.8525 10 6 8.4293 0.9272 2.4407 11 1 9.0636 1.2363 1.6229 12 6 8.9078 0.0504 3.3910 13 7 8.1353 -0.3262 4.3865 14 14 10.6535 -0.6026 3.2646 15 1 11.6108 0.5318 3.3086 16 1 10.9216 -1.5216 4.3997 17 1 10.8154 -1.3376 1.9844 18 6 6.6282 2.4199 1.4159 19 7 3.6298 -0.6596 0.0090 20 1 4.4213 -1.2205 0.0136 21 6 2.3281 -1.1090 0.0056 22 6 1.8945 -2.5083 0.0079 23 8 0.7084 -2.7773 0.0040 24 8 2.8107 -3.4983 0.0133 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3634 0.8901 0.5135 28 1 2.0157 2.1541 -0.0040 29 1 5.6337 1.1001 -0.5778 30 1 4.5953 2.5384 -0.4308 31 1 5.3589 0.0028 2.6275 32 1 6.3595 -0.0957 1.1158 33 1 6.9303 1.3045 4.5605 34 1 8.4722 -0.9428 5.0553 35 1 7.2033 2.2767 0.5012 36 1 6.5893 3.4626 1.7313 37 1 2.4765 -4.4056 0.0150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600191731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:05 Heat of formation + Delta-G solvation = -87.291618 kcal Electronic energy + Delta-G solvation = -21895.262382 eV Core-core repulsion = 18445.288308 eV Total energy + Delta-G solvation = -3449.974074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63333 -40.99064 -40.46483 -37.18370 -36.34669 -34.11550 -33.68581 -32.45462 -29.77758 -28.18433 -27.62590 -26.67859 -24.77133 -23.20205 -21.43209 -20.59126 -20.23057 -19.60668 -19.22079 -18.43163 -17.14185 -17.02430 -16.72301 -16.44651 -15.91398 -15.79661 -15.11880 -15.02967 -14.59912 -14.26117 -13.98406 -13.91344 -13.65551 -13.57089 -13.40891 -13.27404 -12.96080 -12.75366 -12.66494 -12.55631 -12.30651 -12.15236 -11.98093 -11.62949 -11.18964 -10.66291 -10.12901 -9.78007 -9.72966 -9.19800 -8.26319 -6.44522 0.11918 1.42778 1.44920 1.52470 1.55842 1.87392 2.04759 2.25596 2.36331 2.95101 3.28055 3.61039 3.94721 4.03884 4.14464 4.20694 4.33083 4.34186 4.43643 4.49630 4.65549 4.74113 4.87531 4.91426 4.94296 5.12088 5.15490 5.31808 5.35818 5.41174 5.48401 5.73925 5.78044 5.92294 5.95067 6.24140 6.36927 6.62285 6.90787 7.29413 7.54539 8.78363 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.004540 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.446884 B = 6165.774081 C = 6971.188174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.069 4.069 3 C -0.204 4.204 4 C 0.085 3.915 5 C 0.076 3.924 6 N -0.469 5.469 7 C -0.007 4.007 8 C 0.216 3.784 9 O -0.584 6.584 10 C -0.556 4.556 11 H 0.070 0.930 12 C 0.027 3.973 13 N -0.921 5.921 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.015 3.985 19 N -0.519 5.519 20 H 0.424 0.576 21 C -0.080 4.080 22 C 0.559 3.441 23 O -0.532 6.532 24 O -0.516 6.516 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.383 0.617 34 H 0.274 0.726 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -2.011 -10.755 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.228 4.228 4 C -0.035 4.035 5 C -0.052 4.052 6 N -0.191 5.191 7 C -0.136 4.136 8 C 0.175 3.825 9 O -0.396 6.396 10 C -0.594 4.594 11 H 0.089 0.911 12 C -0.172 4.172 13 N -0.563 5.563 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.114 4.114 19 N -0.114 5.114 20 H 0.262 0.738 21 C -0.190 4.190 22 C 0.406 3.594 23 O -0.424 6.424 24 O -0.331 6.331 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.182 0.818 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -9.247 -1.163 -10.611 14.123 hybrid contribution 1.857 -2.297 0.151 2.957 sum -7.390 -3.460 -10.460 13.267 Atomic orbital electron populations 1.20380 0.87860 1.03171 1.02962 1.20307 0.96793 0.90413 1.00267 1.20823 0.90330 0.99643 1.12000 1.20505 0.97292 0.82535 1.03190 1.21443 0.92472 0.99405 0.91909 1.69024 1.21680 1.11541 1.16898 1.24418 0.96567 0.93946 0.98702 1.19761 0.90957 0.90450 0.81356 1.86020 1.84914 1.51039 1.17634 1.21845 0.99217 1.27088 1.11293 0.91136 1.25815 1.01760 0.95315 0.94340 1.69380 1.38031 1.34771 1.14075 0.85472 0.79310 0.78156 0.77890 1.19627 1.20940 1.19247 1.24026 0.89066 0.99802 0.98463 1.41804 1.07399 1.06825 1.55372 0.73757 1.19217 0.84706 0.90650 1.24470 1.19433 0.83283 0.84746 0.71970 1.90888 1.18385 1.84153 1.48953 1.84575 1.41854 1.20990 1.85691 0.90201 0.91728 0.89935 0.81838 0.92184 0.85961 0.94176 0.91969 0.76251 0.91655 0.89465 0.90558 0.70286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.02 9.84 71.23 0.70 -1.32 16 2 C -0.07 -1.94 6.22 -19.55 -0.12 -2.06 16 3 C -0.20 -5.57 10.66 22.01 0.23 -5.33 16 4 C 0.09 2.46 6.25 41.44 0.26 2.72 16 5 C 0.08 2.17 5.36 85.56 0.46 2.62 16 6 N -0.47 -17.70 6.40 -932.82 -5.97 -23.67 16 7 C -0.01 -0.29 6.71 83.58 0.56 0.27 16 8 C 0.22 10.49 1.57 -11.19 -0.02 10.48 16 9 O -0.58 -31.66 13.54 -148.98 -2.02 -33.67 16 10 C -0.56 -28.26 8.68 25.60 0.22 -28.03 16 11 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 12 C 0.03 1.39 5.40 84.65 0.46 1.84 16 13 N -0.92 -48.81 11.02 21.45 0.24 -48.57 16 14 Si 0.97 40.03 29.54 68.60 2.03 42.05 16 15 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 18 C 0.01 0.59 7.12 83.58 0.60 1.18 16 19 N -0.52 -14.83 6.06 -172.33 -1.04 -15.87 16 20 H 0.42 11.38 8.96 -92.70 -0.83 10.54 16 21 C -0.08 -2.36 7.10 40.32 0.29 -2.07 16 22 C 0.56 15.43 8.30 69.97 0.58 16.01 16 23 O -0.53 -16.31 15.60 19.43 0.30 -16.01 16 24 O -0.52 -11.05 13.44 -58.10 -0.78 -11.84 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.68 6.49 -2.39 -0.02 1.66 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.06 1.59 7.56 -2.39 -0.02 1.57 16 30 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 33 H 0.38 21.44 6.34 -74.06 -0.47 20.97 16 34 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 35 H 0.09 3.03 7.72 -2.39 -0.02 3.02 16 36 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.43 4.88 9.11 -74.06 -0.67 4.21 16 Total: -1.00 -63.05 318.87 -3.87 -66.92 By element: Atomic # 1 Polarization: 45.19 SS G_CDS: -0.84 Total: 44.35 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 4.22 Total: -3.69 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -6.78 Total: -88.12 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -2.49 Total: -61.52 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Total: -63.05 -3.87 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600191731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.371 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds