Wall clock time and date at job start Tue Mar 31 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48501 * 109.46983 * 266.33797 * 3 2 1 5 5 H 1.48504 * 109.47014 * 26.33916 * 3 2 1 6 6 H 1.48498 * 109.47284 * 146.33743 * 3 2 1 7 7 C 1.37878 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99923 * 353.62684 * 7 2 1 9 9 C 1.50692 * 120.00169 * 173.62676 * 7 2 1 10 10 O 1.42911 * 110.62790 * 324.05020 * 9 7 2 11 11 C 1.55137 * 110.85654 * 200.84438 * 9 7 2 12 12 C 1.54908 * 101.65507 * 205.88911 * 11 9 7 13 13 N 1.47851 * 104.79441 * 37.06948 * 12 11 9 14 14 C 1.46893 * 111.00193 * 213.63746 * 13 12 11 15 15 C 1.50703 * 109.47020 * 290.84074 * 14 13 12 16 16 C 1.35487 * 126.07883 * 90.02306 * 15 14 13 17 17 N 1.34960 * 108.98603 * 179.73786 * 16 15 14 18 18 H 0.97004 * 125.63332 * 179.97438 * 17 16 15 19 19 C 1.37695 * 108.72959 * 359.97438 * 17 16 15 20 20 C 1.46486 * 126.26406 * 179.97438 * 19 17 16 21 21 O 1.21622 * 120.00371 * 179.97438 * 20 19 17 22 22 O 1.34899 * 120.00152 * 359.97438 * 20 19 17 23 23 C 1.37995 * 107.47529 * 0.02562 * 19 17 16 24 24 C 1.47449 * 108.56561 * 335.90321 * 13 12 11 25 25 H 0.97001 * 120.00086 * 359.97438 * 1 2 3 26 26 H 0.96694 * 113.99628 * 297.77129 * 10 9 7 27 27 H 1.08996 * 110.99200 * 323.98351 * 11 9 7 28 28 H 1.09003 * 110.99388 * 87.76325 * 11 9 7 29 29 H 1.09000 * 110.37739 * 278.24519 * 12 11 9 30 30 H 1.08999 * 110.37652 * 155.89249 * 12 11 9 31 31 H 1.09003 * 109.47281 * 170.84444 * 14 13 12 32 32 H 1.08995 * 109.47202 * 50.83941 * 14 13 12 33 33 H 1.08001 * 125.50253 * 359.73753 * 16 15 14 34 34 H 0.96695 * 117.00211 * 180.02562 * 22 20 19 35 35 H 1.08003 * 126.51740 * 180.02562 * 23 19 17 36 36 H 1.09003 * 109.88573 * 120.39061 * 24 13 12 37 37 H 1.08996 * 109.88603 * 241.58043 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5740 2.0018 -1.3972 5 1 1.4099 2.6738 0.6212 6 1 3.5058 1.4639 0.7760 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1264 0.1048 9 6 3.5046 -1.1981 -0.1443 10 8 3.9273 -0.1623 -1.0336 11 6 4.0084 -2.5811 -0.6343 12 6 5.4551 -2.6012 -0.0809 13 7 5.3654 -1.9324 1.2347 14 6 6.5906 -1.1760 1.5254 15 6 7.7287 -2.1350 1.7625 16 6 8.5718 -2.6213 0.8200 17 7 9.4624 -3.4455 1.4108 18 1 10.1750 -3.9244 0.9593 19 6 9.1924 -3.4941 2.7601 20 6 9.9236 -4.2726 3.7626 21 8 9.5856 -4.2310 4.9302 22 8 10.9720 -5.0358 3.3908 23 6 8.1061 -2.6762 2.9951 24 6 4.1861 -1.0473 1.2319 25 1 -0.4850 0.8401 0.0004 26 1 3.5921 -0.2574 -1.9356 27 1 3.4147 -3.3877 -0.2043 28 1 4.0055 -2.6346 -1.7230 29 1 6.1223 -2.0487 -0.7425 30 1 5.8017 -3.6277 0.0383 31 1 6.4383 -0.5658 2.4157 32 1 6.8290 -0.5314 0.6795 33 1 8.5368 -2.3871 -0.2337 34 1 11.4230 -5.5318 4.0877 35 1 7.6370 -2.4891 3.9498 36 1 3.4967 -1.3457 2.0217 37 1 4.4982 -0.0135 1.3801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:50 Heat of formation + Delta-G solvation = -83.600805 kcal Electronic energy + Delta-G solvation = -21803.267117 eV Core-core repulsion = 18353.453089 eV Total energy + Delta-G solvation = -3449.814029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55334 -39.80729 -38.61191 -36.31232 -35.27648 -32.36399 -32.16388 -30.19335 -29.36178 -28.24177 -25.62369 -24.01974 -23.79483 -20.68637 -20.51727 -19.90751 -19.61071 -18.37939 -17.89551 -17.23595 -15.98981 -15.72636 -15.44976 -15.08154 -14.76782 -14.23174 -14.16292 -13.58134 -13.52938 -13.50652 -12.94564 -12.50027 -12.47840 -12.15747 -11.85823 -11.75506 -11.66218 -11.10211 -11.00896 -10.71693 -10.64249 -10.53652 -10.12820 -10.09722 -9.14457 -8.98123 -8.55620 -8.51890 -8.33042 -7.65647 -6.13230 -4.22903 1.07243 2.50477 2.67544 3.01693 3.06474 3.47058 3.53712 3.68502 4.52567 4.71162 4.90496 5.00152 5.09446 5.16805 5.20214 5.27908 5.57517 5.67934 5.84817 5.92812 6.01822 6.02911 6.08458 6.19963 6.22045 6.31523 6.60934 6.67824 6.76170 6.79307 6.89162 7.21288 7.23273 7.48241 7.64687 7.67903 7.71285 8.20820 8.73239 8.90753 9.49624 10.96429 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037415 B = 0.003730 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.187074 B = 7504.738578 C = 7598.511462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.941 3.059 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.206 3.794 10 O -0.570 6.570 11 C -0.143 4.143 12 C 0.050 3.950 13 N -0.526 5.526 14 C 0.119 3.881 15 C -0.159 4.159 16 C 0.045 3.955 17 N -0.528 5.528 18 H 0.421 0.579 19 C -0.062 4.062 20 C 0.555 3.445 21 O -0.509 6.509 22 O -0.525 6.525 23 C -0.065 4.065 24 C 0.051 3.949 25 H 0.265 0.735 26 H 0.369 0.631 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.172 0.828 34 H 0.415 0.585 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.964 -6.639 0.729 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.776 3.224 4 H -0.219 1.219 5 H -0.255 1.255 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.096 0.904 9 C 0.166 3.834 10 O -0.378 6.378 11 C -0.182 4.182 12 C -0.077 4.077 13 N -0.251 5.251 14 C -0.009 4.009 15 C -0.166 4.166 16 C -0.093 4.093 17 N -0.123 5.123 18 H 0.259 0.741 19 C -0.172 4.172 20 C 0.401 3.599 21 O -0.397 6.397 22 O -0.338 6.338 23 C -0.092 4.092 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.216 0.784 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.189 0.811 34 H 0.274 0.726 35 H 0.169 0.831 36 H 0.109 0.891 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.895 -6.592 1.664 21.973 hybrid contribution 0.759 0.619 -0.935 1.354 sum 21.654 -5.973 0.729 22.475 Atomic orbital electron populations 1.69977 1.06803 1.27591 1.48405 1.25128 0.94828 1.00350 0.92864 0.85877 0.78117 0.80482 0.77947 1.21896 1.25464 1.19401 1.21283 0.89034 0.95146 1.53132 0.90368 1.20375 0.94010 0.82785 0.86234 1.86131 1.76464 1.51390 1.23781 1.23247 0.94754 1.00632 0.99533 1.22937 0.97476 0.98162 0.89173 1.63708 1.02056 1.29387 1.29903 1.20594 0.87415 0.92242 1.00690 1.19448 0.99881 1.04846 0.92397 1.21899 0.92518 0.95933 0.98968 1.41738 1.26987 1.36898 1.06706 0.74094 1.19132 1.04462 1.10767 0.82840 1.19531 0.77312 0.76409 0.86691 1.90966 1.66544 1.63345 1.18872 1.84568 1.44421 1.58542 1.46254 1.21300 0.93505 0.95262 0.99173 1.23341 0.90675 0.94865 0.98698 0.92564 0.78358 0.90654 0.92030 0.94482 0.91874 0.90379 0.94050 0.81097 0.72605 0.83060 0.89122 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.94 23.39 24.90 -169.99 -4.23 19.16 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 6 H -0.27 -6.52 5.18 56.52 0.29 -6.23 16 7 C -0.55 -14.75 8.71 -34.44 -0.30 -15.05 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.21 4.57 0.68 -89.96 -0.06 4.51 16 10 O -0.57 -12.26 8.88 -35.23 -0.31 -12.57 16 11 C -0.14 -2.72 6.23 -24.59 -0.15 -2.87 16 12 C 0.05 0.83 5.84 -2.29 -0.01 0.82 16 13 N -0.53 -9.42 5.15 -232.69 -1.20 -10.62 16 14 C 0.12 1.82 5.06 -4.98 -0.03 1.80 16 15 C -0.16 -2.10 5.22 -105.02 -0.55 -2.65 16 16 C 0.05 0.47 11.37 -17.16 -0.20 0.28 16 17 N -0.53 -4.94 6.07 -9.53 -0.06 -5.00 16 18 H 0.42 2.66 8.96 -40.82 -0.37 2.30 16 19 C -0.06 -0.74 7.10 -82.00 -0.58 -1.32 16 20 C 0.56 6.38 8.30 34.05 0.28 6.67 16 21 O -0.51 -7.40 17.67 -19.36 -0.34 -7.74 16 22 O -0.52 -4.01 13.44 -41.04 -0.55 -4.57 16 23 C -0.07 -0.88 10.60 -39.09 -0.41 -1.29 16 24 C 0.05 1.08 5.64 -2.83 -0.02 1.07 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.37 7.05 9.06 45.56 0.41 7.46 16 27 H 0.07 1.50 7.99 -51.93 -0.42 1.08 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.57 7.62 -51.93 -0.40 0.17 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.18 8.03 -51.93 -0.42 0.77 16 32 H 0.04 0.63 7.85 -51.93 -0.41 0.23 16 33 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.42 1.34 9.11 45.56 0.42 1.75 16 35 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.09 2.04 7.82 -51.93 -0.41 1.63 16 37 H 0.05 1.18 5.70 -51.93 -0.30 0.89 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -33.86 310.53 -6.59 -40.45 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.23 Total: 8.32 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.12 Total: -6.11 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.48 Total: -41.62 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.21 Total: -24.88 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.23 Total: 19.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.86 -6.59 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.149 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds