Wall clock time and date at job start Tue Mar 31 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46864 * 129.28836 * 3 2 1 5 5 N 1.46508 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.46495 * 119.99782 * 90.00373 * 5 4 3 7 7 C 1.50703 * 109.47395 * 89.99766 * 6 5 4 8 8 H 1.07994 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00380 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 239.99776 * 11 9 7 14 14 H 1.48500 * 109.47454 * 119.99769 * 11 9 7 15 15 C 1.34779 * 120.00109 * 269.99800 * 5 4 3 16 16 O 1.21276 * 119.99641 * 180.02562 * 15 5 4 17 17 C 1.50697 * 119.99999 * 0.02562 * 15 5 4 18 18 H 1.09006 * 112.85339 * 50.32647 * 17 15 5 19 19 C 1.53777 * 113.61779 * 181.52759 * 17 15 5 20 20 C 1.53774 * 87.08590 * 139.97810 * 19 17 15 21 21 H 1.09004 * 113.61601 * 89.11528 * 20 19 17 22 22 C 1.50701 * 113.61858 * 219.93669 * 20 19 17 23 23 O 1.20820 * 119.99822 * 359.97438 * 22 20 19 24 24 O 1.34225 * 120.00169 * 179.97438 * 22 20 19 25 25 C 1.53783 * 113.61391 * 279.13430 * 17 15 5 26 26 H 1.08992 * 109.47186 * 9.28886 * 3 2 1 27 27 H 1.09001 * 109.46650 * 249.28532 * 3 2 1 28 28 H 1.09002 * 109.47251 * 59.99962 * 4 3 2 29 29 H 1.09000 * 109.47519 * 299.99801 * 4 3 2 30 30 H 1.09005 * 109.47411 * 329.99700 * 6 5 4 31 31 H 1.08998 * 109.46900 * 209.99779 * 6 5 4 32 32 H 0.97001 * 119.99667 * 0.02562 * 10 9 7 33 33 H 1.09000 * 113.61719 * 254.53737 * 19 17 15 34 34 H 1.09003 * 113.60965 * 25.42623 * 19 17 15 35 35 H 0.96697 * 117.00317 * 179.97438 * 24 22 20 36 36 H 1.09001 * 113.61304 * 334.56670 * 25 17 15 37 37 H 1.09005 * 113.61578 * 105.47388 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9143 -1.1165 5 7 4.5826 0.9154 -1.1161 6 6 5.3161 -0.0660 -1.9192 7 6 5.5671 0.4970 -3.2944 8 1 5.2151 1.4867 -3.5451 9 6 6.2452 -0.2519 -4.2326 10 7 6.6734 -1.4573 -3.9274 11 14 6.5570 0.4462 -5.9369 12 1 5.9789 1.8112 -6.0262 13 1 5.9199 -0.4281 -6.9542 14 1 8.0196 0.5104 -6.1857 15 6 5.2557 1.8195 -0.3770 16 8 6.4684 1.8207 -0.3771 17 6 4.5012 2.8288 0.4495 18 1 3.7347 2.3740 1.0771 19 6 5.4120 3.8115 1.2042 20 6 4.3950 4.9075 0.8450 21 1 3.5985 5.0222 1.5803 22 6 5.0309 6.2190 0.4619 23 8 6.2341 6.3290 0.4593 24 8 4.2606 7.2649 0.1237 25 6 3.9982 4.0356 -0.3602 26 1 2.9718 -1.0133 -0.1659 27 1 2.9711 0.3643 0.9613 28 1 2.7538 1.9284 -0.9506 29 1 2.7544 0.5507 -2.0777 30 1 4.7277 -0.9798 -2.0026 31 1 6.2685 -0.2897 -1.4387 32 1 6.5118 -1.8197 -3.0422 33 1 5.4790 3.6114 2.2736 34 1 6.3869 3.9501 0.7367 35 1 4.7139 8.0853 -0.1141 36 1 4.5858 4.2357 -1.2561 37 1 2.9253 4.0163 -0.5518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:23 Heat of formation + Delta-G solvation = -87.323005 kcal Electronic energy + Delta-G solvation = -21824.038962 eV Core-core repulsion = 18374.063527 eV Total energy + Delta-G solvation = -3449.975435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97795 -39.62295 -37.48939 -36.85349 -36.11196 -35.34936 -33.16503 -30.88677 -28.55003 -26.60941 -25.83197 -24.22864 -23.53923 -22.06271 -19.77037 -18.93180 -18.15270 -17.67286 -17.22087 -16.94227 -16.30169 -15.94691 -15.36614 -15.09688 -14.72802 -14.40191 -13.89958 -13.73295 -13.44805 -12.89857 -12.70281 -12.63000 -12.52126 -12.37624 -12.14651 -11.82607 -11.70401 -11.48869 -11.28873 -11.21638 -11.06541 -10.88733 -10.62391 -10.61451 -10.49692 -10.16857 -9.25680 -9.09250 -8.43226 -7.83206 -6.43839 -4.16672 2.06125 2.63933 2.72761 2.87659 3.13816 3.41105 3.45710 3.52991 3.59274 4.07457 4.22662 4.28371 4.48986 4.57643 4.67461 4.87736 5.03241 5.07987 5.21157 5.27673 5.33807 5.40563 5.50488 5.62362 5.71889 5.75460 5.90353 5.98184 6.27326 6.38780 6.67537 7.02745 7.23358 7.49013 7.76976 7.95689 8.09925 8.36928 8.71624 8.85583 9.52726 10.93994 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.005931 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.779516 B = 4719.534969 C = 6330.217022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.234 3.766 7 C -0.608 4.608 8 H 0.053 0.947 9 C 0.021 3.979 10 N -0.909 5.909 11 Si 1.074 2.926 12 H -0.290 1.290 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.518 3.482 16 O -0.527 6.527 17 C -0.140 4.140 18 H 0.114 0.886 19 C -0.096 4.096 20 C -0.112 4.112 21 H 0.127 0.873 22 C 0.487 3.513 23 O -0.508 6.508 24 O -0.518 6.518 25 C -0.104 4.104 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.408 0.592 36 H 0.095 0.905 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 10.843 10.498 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.114 3.886 7 C -0.646 4.646 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.545 5.545 11 Si 0.903 3.097 12 H -0.216 1.216 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.304 3.696 16 O -0.403 6.403 17 C -0.161 4.161 18 H 0.132 0.868 19 C -0.134 4.134 20 C -0.131 4.131 21 H 0.145 0.855 22 C 0.328 3.672 23 O -0.395 6.395 24 O -0.330 6.330 25 C -0.142 4.142 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.266 0.734 36 H 0.114 0.886 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.581 10.141 9.115 16.111 hybrid contribution -0.101 0.881 1.301 1.574 sum -8.682 11.023 10.415 17.474 Atomic orbital electron populations 1.81223 1.12982 1.08980 1.08812 1.29074 0.95062 0.93029 0.93055 1.19899 0.81448 1.05061 1.02809 1.21326 0.82053 0.99075 0.98409 1.47988 1.04837 1.33824 1.45577 1.19412 0.92053 0.86487 0.90630 1.22276 1.40835 1.04156 0.97379 0.92892 1.25764 0.93265 0.94840 1.04443 1.70756 1.43979 1.16150 1.23630 0.83463 0.76801 0.74870 0.74595 1.21600 1.21302 1.21202 1.20062 0.87914 0.81549 0.80107 1.90703 1.13782 1.71133 1.64651 1.22768 0.99913 0.94735 0.98710 0.86777 1.22856 0.98753 0.90476 1.01307 1.22563 1.01273 0.87882 1.01376 0.85549 1.23350 0.85553 0.85430 0.72827 1.90747 1.16279 1.83600 1.48833 1.84548 1.44915 1.23668 1.79852 1.22878 1.02551 0.92349 0.96400 0.86671 0.87490 0.90353 0.88839 0.95798 0.94572 0.92129 0.89987 0.86947 0.73392 0.88618 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.19 18.54 42.16 0.78 -5.41 16 2 C 0.22 2.44 15.43 -20.76 -0.32 2.12 16 3 C -0.05 -0.49 5.97 -29.52 -0.18 -0.67 16 4 C 0.12 1.49 5.07 -4.04 -0.02 1.47 16 5 N -0.59 -10.49 2.46 -175.06 -0.43 -10.92 16 6 C 0.23 5.42 4.47 -5.19 -0.02 5.40 16 7 C -0.61 -16.27 9.39 -34.44 -0.32 -16.59 16 8 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 10 N -0.91 -26.60 13.65 55.43 0.76 -25.84 16 11 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.52 9.23 7.20 -10.99 -0.08 9.15 16 16 O -0.53 -12.15 15.49 5.56 0.09 -12.06 16 17 C -0.14 -1.66 2.80 -90.96 -0.25 -1.92 16 18 H 0.11 0.95 6.96 -51.93 -0.36 0.59 16 19 C -0.10 -1.16 6.72 -25.92 -0.17 -1.34 16 20 C -0.11 -1.10 4.26 -90.87 -0.39 -1.49 16 21 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 22 C 0.49 5.69 7.86 36.01 0.28 5.97 16 23 O -0.51 -7.84 16.66 -18.75 -0.31 -8.16 16 24 O -0.52 -4.62 13.42 -39.24 -0.53 -5.15 16 25 C -0.10 -1.13 6.40 -25.83 -0.17 -1.29 16 26 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.11 0.79 7.24 -51.93 -0.38 0.42 16 28 H 0.08 0.81 5.66 -51.93 -0.29 0.52 16 29 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 31 H 0.04 0.95 7.29 -51.93 -0.38 0.57 16 32 H 0.27 7.71 7.22 -40.82 -0.29 7.41 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.80 6.75 -51.93 -0.35 1.45 16 35 H 0.41 2.03 9.10 45.56 0.41 2.44 16 36 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 37 H 0.09 0.74 7.60 -51.93 -0.39 0.35 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -36.27 326.60 -5.30 -41.58 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.76 Total: -0.18 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.74 Total: 1.31 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.11 Total: -42.17 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.75 Total: -25.37 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.27 -5.30 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.746 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds