Wall clock time and date at job start Tue Mar 31 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46864 * 129.28836 * 3 2 1 5 5 N 1.46508 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.46495 * 119.99782 * 90.00373 * 5 4 3 7 7 C 1.50703 * 109.47395 * 89.99766 * 6 5 4 8 8 H 1.07994 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00380 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 239.99776 * 11 9 7 14 14 H 1.48500 * 109.47454 * 119.99769 * 11 9 7 15 15 C 1.34779 * 120.00109 * 269.99800 * 5 4 3 16 16 O 1.21276 * 119.99641 * 180.02562 * 15 5 4 17 17 C 1.50697 * 119.99999 * 0.02562 * 15 5 4 18 18 H 1.09006 * 112.85339 * 50.32647 * 17 15 5 19 19 C 1.53777 * 113.61779 * 181.52759 * 17 15 5 20 20 C 1.53774 * 87.08590 * 139.97810 * 19 17 15 21 21 H 1.09004 * 113.61601 * 89.11528 * 20 19 17 22 22 C 1.50701 * 113.61858 * 219.93669 * 20 19 17 23 23 O 1.20820 * 119.99822 * 359.97438 * 22 20 19 24 24 O 1.34225 * 120.00169 * 179.97438 * 22 20 19 25 25 C 1.53783 * 113.61391 * 279.13430 * 17 15 5 26 26 H 1.08992 * 109.47186 * 9.28886 * 3 2 1 27 27 H 1.09001 * 109.46650 * 249.28532 * 3 2 1 28 28 H 1.09002 * 109.47251 * 59.99962 * 4 3 2 29 29 H 1.09000 * 109.47519 * 299.99801 * 4 3 2 30 30 H 1.09005 * 109.47411 * 329.99700 * 6 5 4 31 31 H 1.08998 * 109.46900 * 209.99779 * 6 5 4 32 32 H 0.97001 * 119.99667 * 0.02562 * 10 9 7 33 33 H 1.09000 * 113.61719 * 254.53737 * 19 17 15 34 34 H 1.09003 * 113.60965 * 25.42623 * 19 17 15 35 35 H 0.96697 * 117.00317 * 179.97438 * 24 22 20 36 36 H 1.09001 * 113.61304 * 334.56670 * 25 17 15 37 37 H 1.09005 * 113.61578 * 105.47388 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9143 -1.1165 5 7 4.5826 0.9154 -1.1161 6 6 5.3161 -0.0660 -1.9192 7 6 5.5671 0.4970 -3.2944 8 1 5.2151 1.4867 -3.5451 9 6 6.2452 -0.2519 -4.2326 10 7 6.6734 -1.4573 -3.9274 11 14 6.5570 0.4462 -5.9369 12 1 5.9789 1.8112 -6.0262 13 1 5.9199 -0.4281 -6.9542 14 1 8.0196 0.5104 -6.1857 15 6 5.2557 1.8195 -0.3770 16 8 6.4684 1.8207 -0.3771 17 6 4.5012 2.8288 0.4495 18 1 3.7347 2.3740 1.0771 19 6 5.4120 3.8115 1.2042 20 6 4.3950 4.9075 0.8450 21 1 3.5985 5.0222 1.5803 22 6 5.0309 6.2190 0.4619 23 8 6.2341 6.3290 0.4593 24 8 4.2606 7.2649 0.1237 25 6 3.9982 4.0356 -0.3602 26 1 2.9718 -1.0133 -0.1659 27 1 2.9711 0.3643 0.9613 28 1 2.7538 1.9284 -0.9506 29 1 2.7544 0.5507 -2.0777 30 1 4.7277 -0.9798 -2.0026 31 1 6.2685 -0.2897 -1.4387 32 1 6.5118 -1.8197 -3.0422 33 1 5.4790 3.6114 2.2736 34 1 6.3869 3.9501 0.7367 35 1 4.7139 8.0853 -0.1141 36 1 4.5858 4.2357 -1.2561 37 1 2.9253 4.0163 -0.5518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:23 Heat of formation + Delta-G solvation = -113.327303 kcal Electronic energy + Delta-G solvation = -21825.166593 eV Core-core repulsion = 18374.063527 eV Total energy + Delta-G solvation = -3451.103066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96953 -40.79310 -38.52509 -37.93710 -37.01533 -36.75912 -35.10091 -32.12644 -29.84202 -28.07798 -26.77860 -25.32868 -25.26908 -23.31688 -20.75375 -20.06722 -19.16784 -18.89847 -18.55315 -18.29036 -17.46715 -16.86976 -16.51781 -16.22869 -15.89659 -15.68070 -15.56931 -15.04757 -14.49951 -14.28814 -13.94917 -13.75572 -13.67375 -13.49808 -13.43852 -13.01895 -12.88357 -12.84331 -12.57321 -12.48816 -12.27727 -12.19618 -11.97560 -11.88050 -11.52083 -11.38855 -11.15928 -10.56977 -10.54353 -9.48948 -8.62698 -6.37858 1.17107 1.50751 1.59697 1.65687 1.74403 1.82612 1.85138 2.09190 2.33609 2.55430 3.10020 3.16966 3.34178 3.39214 3.63071 3.77815 3.96566 4.10236 4.17355 4.45821 4.50424 4.61574 4.65758 4.74561 4.79372 4.84973 4.89673 5.03509 5.05391 5.09708 5.36226 5.60110 5.64199 5.89963 6.22437 6.54323 6.61224 6.70771 7.00349 7.34150 7.47104 8.73527 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.005931 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.779516 B = 4719.534969 C = 6330.217022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.244 3.756 7 C -0.613 4.613 8 H 0.044 0.956 9 C -0.030 4.030 10 N -0.935 5.935 11 Si 1.114 2.886 12 H -0.276 1.276 13 H -0.271 1.271 14 H -0.287 1.287 15 C 0.508 3.492 16 O -0.593 6.593 17 C -0.126 4.126 18 H 0.169 0.831 19 C -0.107 4.107 20 C -0.095 4.095 21 H 0.177 0.823 22 C 0.487 3.513 23 O -0.557 6.557 24 O -0.508 6.508 25 C -0.104 4.104 26 H 0.116 0.884 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.031 0.969 31 H -0.004 1.004 32 H 0.259 0.741 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.424 0.576 36 H 0.059 0.941 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 12.186 11.616 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.012 4.012 5 N -0.321 5.321 6 C 0.122 3.878 7 C -0.652 4.652 8 H 0.062 0.938 9 C -0.228 4.228 10 N -0.572 5.572 11 Si 0.937 3.063 12 H -0.201 1.201 13 H -0.197 1.197 14 H -0.213 1.213 15 C 0.298 3.702 16 O -0.473 6.473 17 C -0.147 4.147 18 H 0.186 0.814 19 C -0.145 4.145 20 C -0.113 4.113 21 H 0.194 0.806 22 C 0.331 3.669 23 O -0.448 6.448 24 O -0.321 6.321 25 C -0.141 4.141 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.286 0.714 36 H 0.078 0.922 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.469 11.512 10.244 19.209 hybrid contribution 0.795 0.516 0.958 1.347 sum -10.674 12.027 11.202 19.598 Atomic orbital electron populations 1.81275 1.14341 1.10453 1.10372 1.29075 0.94838 0.91638 0.91604 1.19831 0.80232 1.04608 1.03237 1.21570 0.78637 1.01809 0.99156 1.47919 1.06888 1.32703 1.44638 1.18918 0.91284 0.88054 0.89528 1.22614 1.39986 1.03583 0.99017 0.93782 1.27087 0.93024 0.94724 1.08006 1.70862 1.45725 1.17285 1.23366 0.82951 0.76763 0.75230 0.71338 1.20095 1.19681 1.21313 1.21206 0.87549 0.81677 0.79786 1.90677 1.17047 1.72781 1.66823 1.22925 1.00263 0.93076 0.98408 0.81368 1.22815 0.97173 0.92119 1.02423 1.22641 1.01117 0.85958 1.01587 0.80605 1.23766 0.84981 0.86480 0.71687 1.90745 1.18497 1.84506 1.51057 1.84504 1.44414 1.24087 1.79080 1.22887 1.04232 0.91680 0.95338 0.86594 0.83880 0.86998 0.90288 0.95141 0.98575 0.93130 0.87437 0.91974 0.71430 0.92244 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.27 18.54 20.01 0.37 -11.90 16 2 C 0.25 4.69 15.43 89.44 1.38 6.07 16 3 C -0.04 -0.59 5.97 28.79 0.17 -0.42 16 4 C 0.11 2.53 5.07 86.38 0.44 2.97 16 5 N -0.59 -20.58 2.46 -826.15 -2.03 -22.61 16 6 C 0.24 11.65 4.47 85.63 0.38 12.03 16 7 C -0.61 -33.59 9.39 25.60 0.24 -33.35 16 8 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 9 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 10 N -0.93 -56.14 13.65 21.45 0.29 -55.85 16 11 Si 1.11 50.64 29.90 68.60 2.05 52.69 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 15 C 0.51 17.95 7.20 87.66 0.63 18.58 16 16 O -0.59 -28.71 15.49 -3.02 -0.05 -28.75 16 17 C -0.13 -2.59 2.80 -11.02 -0.03 -2.62 16 18 H 0.17 1.66 6.96 -2.38 -0.02 1.65 16 19 C -0.11 -2.41 6.72 31.12 0.21 -2.20 16 20 C -0.09 -1.51 4.26 -10.96 -0.05 -1.56 16 21 H 0.18 1.18 8.14 -2.38 -0.02 1.16 16 22 C 0.49 10.51 7.86 71.24 0.56 11.07 16 23 O -0.56 -17.42 16.66 21.98 0.37 -17.06 16 24 O -0.51 -7.64 13.42 -51.37 -0.69 -8.33 16 25 C -0.10 -1.89 6.40 31.18 0.20 -1.70 16 26 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.14 1.29 7.24 -2.39 -0.02 1.28 16 28 H 0.11 1.78 5.66 -2.39 -0.01 1.77 16 29 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.03 1.41 7.94 -2.38 -0.02 1.39 16 31 H 0.00 -0.21 7.29 -2.39 -0.02 -0.23 16 32 H 0.26 15.50 7.22 -92.71 -0.67 14.83 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.08 6.75 -2.39 -0.02 2.06 16 35 H 0.42 3.31 9.10 -74.06 -0.67 2.63 16 36 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 37 H 0.13 1.36 7.60 -2.38 -0.02 1.35 16 Total: -1.00 -86.35 326.60 5.45 -80.89 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 0.54 Total: 3.27 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 4.60 Total: 7.65 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.37 Total: -90.37 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.37 Total: -54.14 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -86.35 5.45 -80.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal (2) G-P(sol) polarization free energy of solvation -86.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds