Wall clock time and date at job start Tue Mar 31 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48493 * 109.47332 * 270.00477 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00522 * 3 2 1 6 6 H 1.48496 * 109.46818 * 150.00481 * 3 2 1 7 7 C 1.38951 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99475 * 157.26634 * 7 2 1 9 9 N 1.37098 * 120.00283 * 337.25858 * 7 2 1 10 10 C 1.46501 * 120.00007 * 325.31529 * 9 7 2 11 11 C 1.53002 * 109.46817 * 269.99593 * 10 9 7 12 12 C 1.50700 * 109.46733 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00182 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99729 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00045 * 145.30699 * 9 7 2 16 16 O 1.21288 * 120.00271 * 184.88933 * 15 9 7 17 17 C 1.50707 * 119.99799 * 4.89257 * 15 9 7 18 18 C 1.52998 * 109.46913 * 177.71870 * 17 15 9 19 19 N 1.46498 * 109.47048 * 179.97438 * 18 17 15 20 20 C 1.36349 * 125.63419 * 90.00085 * 19 18 17 21 21 C 1.34853 * 108.21853 * 179.97438 * 20 19 18 22 22 C 1.40895 * 107.41531 * 0.02562 * 21 20 19 23 23 C 1.34849 * 107.41967 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00055 * 5.01205 * 1 2 3 25 25 H 1.08998 * 109.46783 * 29.99571 * 10 9 7 26 26 H 1.09002 * 109.47053 * 149.99788 * 10 9 7 27 27 H 1.08996 * 109.47025 * 299.99924 * 11 10 9 28 28 H 1.09002 * 109.47149 * 60.00255 * 11 10 9 29 29 H 0.96699 * 117.00409 * 179.97438 * 14 12 11 30 30 H 1.08997 * 109.47066 * 57.71980 * 17 15 9 31 31 H 1.08998 * 109.47106 * 297.71910 * 17 15 9 32 32 H 1.09003 * 109.47591 * 60.00148 * 18 17 15 33 33 H 1.08998 * 109.47267 * 299.99941 * 18 17 15 34 34 H 1.07997 * 125.89115 * 359.71051 * 20 19 18 35 35 H 1.08001 * 126.29133 * 179.97438 * 21 20 19 36 36 H 1.08002 * 126.28539 * 179.97438 * 22 21 20 37 37 H 1.07993 * 125.89186 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0259 -1.2395 -0.3620 9 7 1.4033 -2.3447 0.4579 10 6 0.4531 -2.2735 1.5707 11 6 1.2027 -2.4464 2.8932 12 6 0.2252 -2.3737 4.0379 13 8 -0.9503 -2.2010 3.8184 14 8 0.6606 -2.5000 5.3013 15 6 1.6820 -3.5323 -0.1152 16 8 1.0817 -4.5281 0.2299 17 6 2.7398 -3.6229 -1.1849 18 6 2.8977 -5.0800 -1.6238 19 7 3.9254 -5.1680 -2.6640 20 6 5.2574 -5.3662 -2.4501 21 6 5.8779 -5.3893 -3.6471 22 6 4.8930 -5.1978 -4.6364 23 6 3.7082 -5.0656 -4.0062 24 1 -0.4850 0.8368 -0.0734 25 1 -0.0467 -1.3049 1.5602 26 1 -0.2881 -3.0660 1.4669 27 1 1.7025 -3.4149 2.9036 28 1 1.9439 -1.6539 2.9971 29 1 -0.0036 -2.4462 6.0020 30 1 3.6878 -3.2575 -0.7902 31 1 2.4442 -3.0157 -2.0405 32 1 1.9496 -5.4455 -2.0185 33 1 3.1932 -5.6872 -0.7682 34 1 5.7339 -5.4803 -1.4876 35 1 6.9354 -5.5282 -3.8164 36 1 5.0570 -5.1633 -5.7033 37 1 2.7521 -4.9062 -4.4824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:51 Heat of formation + Delta-G solvation = -77.127664 kcal Electronic energy + Delta-G solvation = -21624.312349 eV Core-core repulsion = 18174.779017 eV Total energy + Delta-G solvation = -3449.533332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83324 -39.89374 -38.72038 -35.89738 -35.19613 -33.51941 -32.05159 -30.87901 -28.94660 -28.51516 -25.34568 -24.70029 -22.81547 -20.54323 -20.19198 -19.64102 -19.22965 -17.84276 -17.32007 -16.77324 -16.09092 -15.91418 -15.44523 -14.87051 -14.66422 -14.50387 -13.80306 -13.66694 -13.18507 -13.03314 -12.72511 -12.51961 -12.34315 -12.05688 -11.83721 -11.74377 -11.53392 -11.35017 -11.22076 -11.14432 -10.80633 -10.67530 -10.51892 -10.21114 -10.13503 -9.34903 -8.73097 -8.30563 -7.90928 -7.73706 -6.53202 -4.22471 2.56330 2.60514 3.01064 3.13249 3.15463 3.23760 3.29263 3.35711 3.68980 4.00509 4.66588 4.81284 5.12294 5.31859 5.40312 5.47196 5.52050 5.69446 5.75740 5.77460 5.84066 5.91468 6.14588 6.20920 6.26582 6.41430 6.49742 6.57444 6.74556 6.79683 7.19733 7.24879 7.37022 7.52510 7.66948 7.71586 8.17408 8.24711 8.89172 9.27489 9.71008 10.48168 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.004995 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.113990 B = 5604.382735 C = 6847.515641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.433 5.433 10 C 0.120 3.880 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.524 6.524 15 C 0.472 3.528 16 O -0.607 6.607 17 C -0.132 4.132 18 C 0.119 3.881 19 N -0.441 5.441 20 C -0.015 4.015 21 C -0.210 4.210 22 C -0.211 4.211 23 C -0.012 4.012 24 H 0.274 0.726 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.402 0.598 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -4.131 0.819 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.160 4.160 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.112 0.888 9 N -0.150 5.150 10 C -0.004 4.004 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.261 3.739 16 O -0.494 6.494 17 C -0.173 4.173 18 C -0.002 4.002 19 N -0.115 5.115 20 C -0.146 4.146 21 C -0.235 4.235 22 C -0.236 4.236 23 C -0.143 4.143 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.259 0.741 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.864 -4.395 0.953 7.390 hybrid contribution 0.003 1.125 0.447 1.210 sum 5.867 -3.270 1.400 6.861 Atomic orbital electron populations 1.69842 1.06373 1.28447 1.43883 1.25390 0.95069 1.00042 0.95512 0.86155 0.79792 0.81338 0.78867 1.20008 1.20565 1.19103 1.19425 0.98002 0.85137 1.45691 0.88837 1.43379 1.38925 1.05732 1.26971 1.21260 0.91159 1.06224 0.81718 1.21832 0.98063 1.04979 0.91377 1.23746 0.89135 0.71440 0.83182 1.90708 1.19357 1.44896 1.85106 1.84584 1.46156 1.85265 1.17615 1.20172 0.85845 0.84238 0.83659 1.90555 1.55095 1.36810 1.66914 1.21671 0.99952 0.95633 1.00029 1.21682 0.90626 0.97971 0.89931 1.44365 1.07195 1.53626 1.06353 1.21821 0.83168 1.09977 0.99642 1.20814 0.98889 1.11542 0.92258 1.20819 0.92548 1.11468 0.98748 1.21856 0.99978 1.09742 0.82695 0.91528 0.86261 0.91378 0.88641 0.87679 0.74061 0.89634 0.88776 0.88833 0.89080 0.82577 0.85262 0.85234 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.77 11.34 55.50 0.63 -21.14 16 2 C 0.05 1.14 4.95 -17.47 -0.09 1.05 16 3 Si 0.91 18.50 29.61 -169.99 -5.03 13.46 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.36 -8.36 8.73 -14.93 -0.13 -8.49 16 8 H 0.09 2.09 6.95 -52.48 -0.36 1.72 16 9 N -0.43 -10.10 2.54 -114.81 -0.29 -10.39 16 10 C 0.12 2.77 4.34 -4.04 -0.02 2.76 16 11 C -0.12 -2.33 6.14 -27.88 -0.17 -2.50 16 12 C 0.48 8.62 8.33 36.01 0.30 8.92 16 13 O -0.51 -10.74 16.74 -18.75 -0.31 -11.06 16 14 O -0.52 -7.24 13.42 -39.25 -0.53 -7.76 16 15 C 0.47 10.47 7.62 -10.98 -0.08 10.38 16 16 O -0.61 -14.61 15.54 5.55 0.09 -14.52 16 17 C -0.13 -2.40 4.65 -27.88 -0.13 -2.53 16 18 C 0.12 1.89 5.38 -4.04 -0.02 1.87 16 19 N -0.44 -6.68 2.75 -117.13 -0.32 -7.00 16 20 C -0.02 -0.22 11.43 -16.74 -0.19 -0.41 16 21 C -0.21 -2.92 10.86 -39.78 -0.43 -3.35 16 22 C -0.21 -2.97 10.86 -39.78 -0.43 -3.40 16 23 C -0.01 -0.17 11.43 -16.75 -0.19 -0.37 16 24 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 25 H 0.12 3.02 5.32 -51.93 -0.28 2.75 16 26 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 28 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 29 H 0.40 3.61 9.10 45.56 0.41 4.03 16 30 H 0.09 1.49 7.68 -51.93 -0.40 1.09 16 31 H 0.09 1.78 8.09 -51.93 -0.42 1.35 16 32 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 33 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -29.92 325.47 -6.39 -36.32 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -3.94 Total: 13.25 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.59 Total: 3.93 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.02 Total: -38.53 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.75 Total: -33.34 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.92 -6.39 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.809 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds