Wall clock time and date at job start Tue Mar 31 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48493 * 109.47332 * 270.00477 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00522 * 3 2 1 6 6 H 1.48496 * 109.46818 * 150.00481 * 3 2 1 7 7 C 1.38951 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99475 * 157.26634 * 7 2 1 9 9 N 1.37098 * 120.00283 * 337.25858 * 7 2 1 10 10 C 1.46501 * 120.00007 * 325.31529 * 9 7 2 11 11 C 1.53002 * 109.46817 * 269.99593 * 10 9 7 12 12 C 1.50700 * 109.46733 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00182 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99729 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00045 * 145.30699 * 9 7 2 16 16 O 1.21288 * 120.00271 * 184.88933 * 15 9 7 17 17 C 1.50707 * 119.99799 * 4.89257 * 15 9 7 18 18 C 1.52998 * 109.46913 * 177.71870 * 17 15 9 19 19 N 1.46498 * 109.47048 * 179.97438 * 18 17 15 20 20 C 1.36349 * 125.63419 * 90.00085 * 19 18 17 21 21 C 1.34853 * 108.21853 * 179.97438 * 20 19 18 22 22 C 1.40895 * 107.41531 * 0.02562 * 21 20 19 23 23 C 1.34849 * 107.41967 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00055 * 5.01205 * 1 2 3 25 25 H 1.08998 * 109.46783 * 29.99571 * 10 9 7 26 26 H 1.09002 * 109.47053 * 149.99788 * 10 9 7 27 27 H 1.08996 * 109.47025 * 299.99924 * 11 10 9 28 28 H 1.09002 * 109.47149 * 60.00255 * 11 10 9 29 29 H 0.96699 * 117.00409 * 179.97438 * 14 12 11 30 30 H 1.08997 * 109.47066 * 57.71980 * 17 15 9 31 31 H 1.08998 * 109.47106 * 297.71910 * 17 15 9 32 32 H 1.09003 * 109.47591 * 60.00148 * 18 17 15 33 33 H 1.08998 * 109.47267 * 299.99941 * 18 17 15 34 34 H 1.07997 * 125.89115 * 359.71051 * 20 19 18 35 35 H 1.08001 * 126.29133 * 179.97438 * 21 20 19 36 36 H 1.08002 * 126.28539 * 179.97438 * 22 21 20 37 37 H 1.07993 * 125.89186 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0259 -1.2395 -0.3620 9 7 1.4033 -2.3447 0.4579 10 6 0.4531 -2.2735 1.5707 11 6 1.2027 -2.4464 2.8932 12 6 0.2252 -2.3737 4.0379 13 8 -0.9503 -2.2010 3.8184 14 8 0.6606 -2.5000 5.3013 15 6 1.6820 -3.5323 -0.1152 16 8 1.0817 -4.5281 0.2299 17 6 2.7398 -3.6229 -1.1849 18 6 2.8977 -5.0800 -1.6238 19 7 3.9254 -5.1680 -2.6640 20 6 5.2574 -5.3662 -2.4501 21 6 5.8779 -5.3893 -3.6471 22 6 4.8930 -5.1978 -4.6364 23 6 3.7082 -5.0656 -4.0062 24 1 -0.4850 0.8368 -0.0734 25 1 -0.0467 -1.3049 1.5602 26 1 -0.2881 -3.0660 1.4669 27 1 1.7025 -3.4149 2.9036 28 1 1.9439 -1.6539 2.9971 29 1 -0.0036 -2.4462 6.0020 30 1 3.6878 -3.2575 -0.7902 31 1 2.4442 -3.0157 -2.0405 32 1 1.9496 -5.4455 -2.0185 33 1 3.1932 -5.6872 -0.7682 34 1 5.7339 -5.4803 -1.4876 35 1 6.9354 -5.5282 -3.8164 36 1 5.0570 -5.1633 -5.7033 37 1 2.7521 -4.9062 -4.4824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:50 Heat of formation + Delta-G solvation = -94.497189 kcal Electronic energy + Delta-G solvation = -21625.065548 eV Core-core repulsion = 18174.779017 eV Total energy + Delta-G solvation = -3450.286531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95357 -41.34602 -40.42507 -37.30939 -36.88902 -34.87363 -33.83371 -32.51736 -30.29005 -29.58047 -27.13391 -26.23199 -24.25659 -22.00282 -21.27062 -21.05807 -20.71400 -19.28222 -18.74119 -18.28841 -17.59577 -17.49090 -16.94805 -16.39571 -16.25828 -16.10897 -15.19460 -14.99232 -14.58854 -14.39325 -14.24728 -13.91297 -13.78442 -13.47446 -13.10298 -13.02489 -12.94909 -12.83862 -12.78949 -12.57892 -12.51748 -12.13791 -12.09695 -11.91495 -11.68252 -11.13026 -10.50104 -9.57818 -9.46075 -8.99298 -8.34595 -6.09342 1.17540 1.39702 1.44808 1.49496 1.59611 1.86172 1.98439 2.15060 2.22906 2.34367 3.00591 3.08209 3.84194 3.97993 3.99762 4.09070 4.21446 4.35084 4.45556 4.47575 4.56156 4.64093 4.73500 4.82198 4.89416 4.96729 5.00038 5.33718 5.46111 5.49925 5.50487 5.59003 5.92500 6.19066 6.34515 6.43874 6.55617 6.98767 7.06747 7.48687 7.91852 8.67669 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.004995 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.113990 B = 5604.382735 C = 6847.515641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.006 3.994 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.361 4.361 8 H 0.108 0.892 9 N -0.445 5.445 10 C 0.124 3.876 11 C -0.115 4.115 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.507 6.507 15 C 0.464 3.536 16 O -0.630 6.630 17 C -0.117 4.117 18 C 0.132 3.868 19 N -0.449 5.449 20 C -0.026 4.026 21 C -0.218 4.218 22 C -0.217 4.217 23 C -0.032 4.032 24 H 0.273 0.727 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.427 0.573 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -3.946 1.132 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.198 4.198 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.125 0.875 9 N -0.162 5.162 10 C -0.001 4.001 11 C -0.154 4.154 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.254 3.746 16 O -0.519 6.519 17 C -0.158 4.158 18 C 0.010 3.990 19 N -0.124 5.124 20 C -0.156 4.156 21 C -0.242 4.242 22 C -0.242 4.242 23 C -0.162 4.162 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.057 0.943 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.289 0.711 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.194 0.806 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.124 -4.224 1.287 9.247 hybrid contribution -0.695 1.000 0.365 1.271 sum 7.429 -3.225 1.652 8.266 Atomic orbital electron populations 1.69972 1.08063 1.29060 1.45583 1.26209 0.95539 1.03069 0.95021 0.85154 0.78819 0.77102 0.78771 1.19806 1.21206 1.17639 1.19775 0.98464 0.85188 1.45339 0.87498 1.43608 1.38898 1.06270 1.27428 1.21027 0.91315 1.03647 0.84062 1.21598 0.97893 1.05943 0.89948 1.23390 0.88050 0.70603 0.84199 1.90709 1.20741 1.46802 1.85880 1.84499 1.46679 1.84208 1.16642 1.20842 0.86259 0.83543 0.83970 1.90532 1.56131 1.37470 1.67745 1.21544 0.98818 0.97257 0.98144 1.21443 0.90843 0.96288 0.90406 1.44360 1.07393 1.54418 1.06260 1.22286 0.82782 1.09671 1.00878 1.21171 0.99961 1.11029 0.92084 1.21165 0.92421 1.10753 0.99850 1.22216 1.00946 1.10318 0.82738 0.91713 0.88642 0.94304 0.87649 0.86424 0.71142 0.88437 0.89565 0.89548 0.88505 0.80596 0.83257 0.83500 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.51 11.34 21.66 0.25 -46.26 16 2 C 0.01 0.26 4.95 84.93 0.42 0.68 16 3 Si 0.98 37.32 29.61 68.60 2.03 39.35 16 4 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.29 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 7 C -0.36 -16.77 8.73 84.04 0.73 -16.04 16 8 H 0.11 4.60 6.95 -2.91 -0.02 4.58 16 9 N -0.44 -20.89 2.54 -635.52 -1.61 -22.51 16 10 C 0.12 5.84 4.34 86.38 0.37 6.22 16 11 C -0.12 -4.29 6.14 29.85 0.18 -4.10 16 12 C 0.49 17.23 8.33 71.24 0.59 17.82 16 13 O -0.55 -23.24 16.74 21.97 0.37 -22.88 16 14 O -0.51 -12.74 13.42 -51.38 -0.69 -13.43 16 15 C 0.46 20.62 7.62 87.66 0.67 21.29 16 16 O -0.63 -30.72 15.54 -3.06 -0.05 -30.76 16 17 C -0.12 -4.15 4.65 29.85 0.14 -4.01 16 18 C 0.13 4.08 5.38 86.38 0.46 4.54 16 19 N -0.45 -12.94 2.75 -524.48 -1.44 -14.38 16 20 C -0.03 -0.69 11.43 83.21 0.95 0.26 16 21 C -0.22 -5.54 10.86 22.14 0.24 -5.30 16 22 C -0.22 -5.69 10.86 22.14 0.24 -5.45 16 23 C -0.03 -0.90 11.43 83.21 0.95 0.05 16 24 H 0.27 13.58 8.32 -92.71 -0.77 12.81 16 25 H 0.10 5.01 5.32 -2.39 -0.01 5.00 16 26 H 0.04 2.01 7.32 -2.39 -0.02 1.99 16 27 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 29 H 0.43 6.48 9.10 -74.06 -0.67 5.80 16 30 H 0.10 3.22 7.68 -2.39 -0.02 3.20 16 31 H 0.09 3.21 8.09 -2.39 -0.02 3.19 16 32 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 33 H 0.10 2.87 8.12 -2.39 -0.02 2.85 16 34 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -64.48 325.47 5.23 -59.25 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.42 Total: 35.68 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.96 Total: 15.95 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.81 Total: -83.15 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.37 Total: -67.07 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Total: -64.48 5.23 -59.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.247 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds