Wall clock time and date at job start Tue Mar 31 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00099 * 2 1 4 4 H 1.48497 * 109.46968 * 275.68605 * 3 2 1 5 5 H 1.48501 * 109.47330 * 35.69014 * 3 2 1 6 6 H 1.48508 * 109.47195 * 155.69031 * 3 2 1 7 7 C 1.38814 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99775 * 337.30605 * 7 2 1 9 9 N 1.36935 * 119.99934 * 157.30280 * 7 2 1 10 10 C 1.46501 * 119.99941 * 142.01856 * 9 7 2 11 11 C 1.52998 * 109.47338 * 269.74985 * 10 9 7 12 12 C 1.50703 * 109.47392 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99309 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00458 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00016 * 322.02573 * 9 7 2 16 16 C 1.50700 * 109.46664 * 269.99449 * 15 9 7 17 17 C 1.34333 * 126.44193 * 90.02695 * 16 15 9 18 18 N 1.34482 * 107.66921 * 179.97438 * 17 16 15 19 19 C 1.30252 * 108.70226 * 0.02562 * 18 17 16 20 20 C 1.50698 * 125.62232 * 180.02562 * 19 18 17 21 21 C 1.53006 * 117.49696 * 8.72527 * 20 19 18 22 22 C 1.52998 * 117.49849 * 300.06629 * 20 19 18 23 23 O 1.33977 * 108.76010 * 359.73193 * 19 18 17 24 24 H 0.97003 * 119.99713 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46770 * 29.74962 * 10 9 7 26 26 H 1.09002 * 109.46752 * 149.74783 * 10 9 7 27 27 H 1.08992 * 109.47346 * 300.00455 * 11 10 9 28 28 H 1.09007 * 109.47019 * 59.99857 * 11 10 9 29 29 H 0.96696 * 117.00158 * 180.02562 * 14 12 11 30 30 H 1.08998 * 109.47224 * 149.99913 * 15 9 7 31 31 H 1.08990 * 109.47363 * 29.99327 * 15 9 7 32 32 H 1.07998 * 126.16819 * 0.02562 * 17 16 15 33 33 H 1.08998 * 115.55218 * 154.38705 * 20 19 18 34 34 H 1.08996 * 117.49464 * 359.97438 * 21 20 19 35 35 H 1.08997 * 117.49840 * 145.01655 * 21 20 19 36 36 H 1.09004 * 117.49499 * 214.97441 * 22 20 19 37 37 H 1.09000 * 117.50094 * 359.97093 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3776 2.1157 -1.3932 5 1 1.5130 2.6150 0.8168 6 1 3.6028 1.4084 0.5764 7 6 2.0102 -1.2022 0.0005 8 1 1.5328 -2.1011 0.3618 9 7 3.3000 -1.2484 -0.4570 10 6 4.2844 -2.1027 0.2118 11 6 4.9817 -1.3080 1.3178 12 6 5.9939 -2.1870 2.0062 13 8 6.1419 -3.3319 1.6492 14 8 6.7302 -1.6986 3.0166 15 6 3.6956 -0.4433 -1.6153 16 6 3.4863 -1.2412 -2.8765 17 6 2.3688 -1.2784 -3.6210 18 7 2.5954 -2.1064 -4.6562 19 6 3.8089 -2.5700 -4.5624 20 6 4.4584 -3.5306 -5.5248 21 6 3.7087 -3.8476 -6.8204 22 6 3.7987 -4.8984 -5.7109 23 8 4.3869 -2.0471 -3.4726 24 1 -0.4850 0.8401 -0.0004 25 1 3.7804 -2.9657 0.6470 26 1 5.0239 -2.4416 -0.5137 27 1 5.4856 -0.4451 0.8826 28 1 4.2421 -0.9691 2.0433 29 1 7.3666 -2.3001 3.4269 30 1 4.7477 -0.1723 -1.5272 31 1 3.0892 0.4616 -1.6530 32 1 1.4536 -0.7398 -3.4242 33 1 5.5465 -3.4862 -5.5711 34 1 2.7456 -3.3617 -6.9763 35 1 4.3037 -4.0121 -7.7188 36 1 4.4528 -5.7539 -5.8800 37 1 2.8951 -5.1037 -5.1369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:44 Heat of formation + Delta-G solvation = -41.991079 kcal Electronic energy + Delta-G solvation = -21847.938998 eV Core-core repulsion = 18399.929303 eV Total energy + Delta-G solvation = -3448.009695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.21752 -41.19517 -38.44455 -38.01578 -37.03615 -35.53034 -34.13708 -33.00210 -30.93704 -27.78907 -26.82467 -24.84868 -23.62467 -23.27514 -22.74734 -21.42091 -21.40326 -19.29172 -18.99432 -18.23334 -17.73112 -17.42830 -17.23765 -16.93264 -16.30758 -15.74254 -15.57196 -15.29744 -15.01724 -14.65356 -14.40679 -13.96480 -13.83250 -13.33399 -13.22926 -12.98193 -12.62125 -12.50956 -12.49851 -12.36106 -12.18864 -11.93181 -11.75326 -11.62468 -11.58233 -11.55927 -11.43843 -10.73039 -9.55010 -9.07583 -8.24698 -5.71189 0.47885 1.25025 1.32537 1.45038 1.52644 1.62723 1.71986 2.16920 2.38462 2.89778 2.98140 3.11436 3.33388 3.76214 3.87388 3.96963 4.03106 4.06666 4.12685 4.21499 4.41778 4.45093 4.58534 4.71716 4.76276 4.78108 4.91903 4.98091 5.03122 5.10896 5.16098 5.26356 5.44233 5.64625 5.83384 6.12597 6.76407 6.79703 7.05856 7.45672 7.85889 8.93479 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.006330 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.191904 B = 4422.295228 C = 6094.848915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.925 3.075 4 H -0.270 1.270 5 H -0.304 1.304 6 H -0.230 1.230 7 C -0.273 4.273 8 H 0.036 0.964 9 N -0.592 5.592 10 C 0.164 3.836 11 C -0.130 4.130 12 C 0.495 3.505 13 O -0.552 6.552 14 O -0.512 6.512 15 C 0.210 3.790 16 C -0.047 4.047 17 C -0.056 4.056 18 N -0.504 5.504 19 C 0.198 3.802 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.151 4.151 23 O -0.206 6.206 24 H 0.267 0.733 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.426 0.574 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.962 -2.883 -5.749 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.751 3.249 4 H -0.197 1.197 5 H -0.232 1.232 6 H -0.153 1.153 7 C -0.402 4.402 8 H 0.054 0.946 9 N -0.312 5.312 10 C 0.039 3.961 11 C -0.170 4.170 12 C 0.338 3.662 13 O -0.444 6.444 14 O -0.325 6.325 15 C 0.083 3.917 16 C -0.103 4.103 17 C -0.194 4.194 18 N -0.234 5.234 19 C -0.009 4.009 20 C -0.112 4.112 21 C -0.171 4.171 22 C -0.189 4.189 23 O -0.094 6.094 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.287 0.713 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.195 -3.002 -6.422 15.867 hybrid contribution 0.058 0.623 1.198 1.352 sum 14.253 -2.379 -5.224 15.366 Atomic orbital electron populations 1.70013 1.08024 1.27999 1.51648 1.26079 0.95521 1.01285 0.97373 0.86127 0.81031 0.79677 0.78046 1.19697 1.23182 1.15276 1.18505 0.87925 0.93366 1.40435 0.94603 1.44187 1.07518 1.52382 1.27123 1.20705 0.90665 0.91979 0.92748 1.22024 0.95944 0.99526 0.99526 1.23574 0.79409 0.86278 0.76889 1.90695 1.67628 1.21182 1.64855 1.84532 1.51624 1.49524 1.46838 1.20121 1.01402 0.91075 0.79084 1.25248 0.89251 0.97539 0.98281 1.22961 1.00194 1.02668 0.93625 1.70249 1.15933 1.12728 1.24485 1.25981 0.88473 0.98406 0.87994 1.20385 0.99729 0.94858 0.96255 1.23166 1.01834 1.00384 0.91762 1.23207 1.02331 0.91643 1.01690 1.84354 1.42141 1.48657 1.34205 0.92373 0.93725 0.92232 0.86453 0.87564 0.71289 0.88337 0.90197 0.81643 0.82511 0.89373 0.84040 0.84257 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.38 13.97 21.65 0.30 -55.07 16 2 C 0.00 -0.22 5.29 84.86 0.45 0.23 16 3 Si 0.93 40.30 25.08 68.60 1.72 42.02 16 4 H -0.27 -11.25 6.68 99.48 0.66 -10.58 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.23 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.27 -14.59 9.90 84.03 0.83 -13.76 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 9 N -0.59 -26.08 2.05 -706.35 -1.45 -27.53 16 10 C 0.16 6.29 4.96 86.38 0.43 6.72 16 11 C -0.13 -4.05 6.14 29.85 0.18 -3.86 16 12 C 0.49 14.14 8.33 71.24 0.59 14.73 16 13 O -0.55 -19.09 16.74 21.94 0.37 -18.73 16 14 O -0.51 -10.86 13.42 -51.36 -0.69 -11.55 16 15 C 0.21 8.37 5.06 85.63 0.43 8.80 16 16 C -0.05 -1.98 6.97 24.79 0.17 -1.81 16 17 C -0.06 -2.48 11.80 83.39 0.98 -1.50 16 18 N -0.50 -20.73 10.84 -303.82 -3.29 -24.03 16 19 C 0.20 7.11 7.89 88.34 0.70 7.81 16 20 C -0.09 -2.25 6.33 -11.54 -0.07 -2.32 16 21 C -0.13 -2.61 10.14 30.62 0.31 -2.29 16 22 C -0.15 -3.07 10.24 30.62 0.31 -2.76 16 23 O -0.21 -8.00 10.78 -3.83 -0.04 -8.04 16 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.04 1.88 7.99 -2.39 -0.02 1.86 16 26 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 27 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 29 H 0.43 4.93 9.10 -74.06 -0.67 4.25 16 30 H 0.10 3.20 8.07 -2.39 -0.02 3.18 16 31 H 0.08 3.35 3.36 -2.39 -0.01 3.34 16 32 H 0.17 7.64 8.06 -2.91 -0.02 7.62 16 33 H 0.16 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.09 2.14 7.88 -2.39 -0.02 2.12 16 35 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -71.46 324.54 2.63 -68.83 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.39 Total: 24.10 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.32 Total: 9.99 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.44 Total: -106.63 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.36 Total: -38.32 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.72 Total: 42.02 kcal Total: -71.46 2.63 -68.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.842 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds