Wall clock time and date at job start Tue Mar 31 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34223 * 125.80380 * 2 1 4 4 H 0.96998 * 125.38424 * 359.97438 * 3 2 1 5 5 C 1.37795 * 109.23353 * 179.89226 * 3 2 1 6 6 C 1.46817 * 125.83891 * 180.11692 * 5 3 2 7 7 O 1.21671 * 120.00146 * 156.19091 * 6 5 3 8 8 N 1.34778 * 119.99996 * 336.18817 * 6 5 3 9 9 C 1.46498 * 119.99719 * 5.38055 * 8 6 5 10 10 C 1.46496 * 120.00003 * 185.38605 * 8 6 5 11 11 C 1.50699 * 109.47337 * 89.99597 * 10 8 6 12 12 H 1.07999 * 120.00122 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00110 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00041 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00016 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47041 * 90.00506 * 15 13 11 17 17 H 1.48501 * 109.47057 * 210.00574 * 15 13 11 18 18 H 1.48500 * 109.47114 * 330.00332 * 15 13 11 19 19 C 1.36327 * 108.31944 * 0.36929 * 5 3 2 20 20 C 1.50697 * 126.49786 * 179.77889 * 19 5 3 21 21 C 1.38288 * 125.80609 * 180.30077 * 2 1 3 22 22 C 1.47248 * 126.47325 * 359.93792 * 21 2 1 23 23 O 1.21524 * 120.00102 * 90.02056 * 22 21 2 24 24 O 1.34766 * 119.99355 * 270.01699 * 22 21 2 25 25 H 1.08994 * 109.47137 * 269.68920 * 1 2 3 26 26 H 1.09008 * 109.46684 * 149.69600 * 1 2 3 27 27 H 1.08994 * 109.46907 * 29.70056 * 1 2 3 28 28 H 1.09003 * 109.46869 * 92.02943 * 9 8 6 29 29 H 1.09004 * 109.47334 * 212.02358 * 9 8 6 30 30 H 1.09000 * 109.47566 * 332.02252 * 9 8 6 31 31 H 1.09003 * 109.47101 * 209.99810 * 10 8 6 32 32 H 1.08998 * 109.47171 * 329.99966 * 10 8 6 33 33 H 0.96999 * 119.99413 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47218 * 270.02577 * 20 19 5 35 35 H 1.09005 * 109.47077 * 30.03105 * 20 19 5 36 36 H 1.09001 * 109.47386 * 150.01998 * 20 19 5 37 37 H 0.96700 * 116.99256 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2923 1.0886 0.0000 4 1 1.9795 2.0068 -0.0004 5 6 3.6130 0.6956 0.0024 6 6 4.7764 1.5912 0.0057 7 8 5.8456 1.1981 0.4329 8 7 4.6599 2.8489 -0.4647 9 6 3.3484 3.3610 -0.8693 10 6 5.8449 3.7036 -0.5716 11 6 6.4737 3.5231 -1.9292 12 1 6.0344 2.8404 -2.6414 13 6 7.6093 4.2304 -2.2624 14 7 8.1441 5.0623 -1.3954 15 14 8.3884 4.0072 -3.9455 16 1 7.8010 4.9849 -4.8964 17 1 9.8530 4.2315 -3.8467 18 1 8.1305 2.6278 -4.4313 19 6 3.6546 -0.6670 -0.0043 20 6 4.8929 -1.5259 -0.0092 21 6 2.3161 -1.1215 -0.0059 22 6 1.8679 -2.5241 -0.0120 23 8 1.6824 -3.0982 -1.0669 24 8 1.6635 -3.1711 1.1524 25 1 -0.3633 -0.0056 1.0276 26 1 -0.3633 -0.8873 -0.5186 27 1 -0.3633 0.8926 -0.5091 28 1 2.8774 3.8622 -0.0236 29 1 3.4718 4.0694 -1.6886 30 1 2.7200 2.5328 -1.1968 31 1 5.5539 4.7460 -0.4416 32 1 6.5627 3.4277 0.2008 33 1 8.9432 5.5595 -1.6298 34 1 5.1911 -1.7275 -1.0380 35 1 5.6988 -1.0045 0.5073 36 1 4.6843 -2.4670 0.4998 37 1 1.3700 -4.0908 1.0978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607489933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:27 Heat of formation + Delta-G solvation = -71.619794 kcal Electronic energy + Delta-G solvation = -21994.808814 eV Core-core repulsion = 18545.514321 eV Total energy + Delta-G solvation = -3449.294493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81715 -39.80241 -38.45557 -36.02968 -35.22945 -32.99010 -32.71696 -31.71251 -28.44143 -27.87072 -27.03286 -25.37673 -24.28323 -22.71530 -20.36508 -20.04041 -19.02333 -17.98902 -17.17344 -16.60975 -16.26193 -15.70909 -15.48779 -15.07291 -14.80118 -14.32731 -14.13715 -13.49200 -13.35442 -13.13663 -13.05837 -12.75789 -12.51174 -12.44560 -12.13963 -12.12775 -11.77920 -11.64441 -11.40202 -11.27188 -10.94274 -10.78453 -10.63701 -10.20788 -9.72136 -9.20251 -8.84308 -8.48948 -8.12505 -7.76273 -6.10085 -4.15514 1.63809 2.09196 2.21202 2.88276 3.27682 3.30092 3.34869 3.39324 3.63798 3.96938 4.40860 4.53172 4.78860 4.97911 5.12402 5.21732 5.22777 5.25059 5.36030 5.54207 5.56233 5.57204 5.78890 5.94576 6.02283 6.14179 6.35001 6.42914 6.59975 6.81308 6.98648 7.24331 7.33131 7.41092 7.85835 7.86836 8.14754 8.21519 8.78266 8.93684 9.50114 10.97977 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.004359 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.978993 B = 6421.376602 C = 6779.672253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.089 3.911 3 N -0.524 5.524 4 H 0.426 0.574 5 C -0.031 4.031 6 C 0.578 3.422 7 O -0.521 6.521 8 N -0.597 5.597 9 C 0.061 3.939 10 C 0.245 3.755 11 C -0.531 4.531 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.042 4.042 20 C -0.099 4.099 21 C -0.215 4.215 22 C 0.570 3.430 23 O -0.510 6.510 24 O -0.510 6.510 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.235 -9.176 4.555 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.032 4.032 3 N -0.126 5.126 4 H 0.271 0.729 5 C -0.143 4.143 6 C 0.365 3.635 7 O -0.397 6.397 8 N -0.329 5.329 9 C -0.084 4.084 10 C 0.127 3.873 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.049 4.049 20 C -0.156 4.156 21 C -0.224 4.224 22 C 0.412 3.588 23 O -0.398 6.398 24 O -0.321 6.321 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.389 -8.758 4.540 19.129 hybrid contribution -0.015 -0.148 -1.110 1.120 sum -16.405 -8.906 3.430 18.979 Atomic orbital electron populations 1.20499 0.86944 1.04130 1.03558 1.20476 0.93379 0.85516 1.03852 1.42582 1.05711 1.08774 1.55546 0.72880 1.20248 0.83089 0.94194 1.16744 1.16974 0.86175 0.81284 0.79095 1.90778 1.27440 1.74298 1.47166 1.48102 1.09810 1.13193 1.61805 1.22061 0.85859 0.99794 1.00641 1.19375 0.81265 0.88459 0.98214 1.21420 1.11019 1.24999 0.99519 0.92348 1.24926 0.96503 0.94961 0.97559 1.69932 1.21710 1.26761 1.34816 0.86480 0.78538 0.78596 0.83756 1.20626 1.20990 1.19786 1.19426 0.93218 0.91380 1.00833 1.20462 0.94652 0.97685 1.02775 1.18128 0.93679 0.88768 1.21790 1.20042 0.71915 0.86141 0.80675 1.90895 1.47713 1.68261 1.32882 1.84742 1.80055 1.31514 1.35770 0.89828 0.89871 0.90572 0.93284 0.89666 0.91990 0.94754 0.93281 0.92615 0.91128 0.88655 0.92246 0.73554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.24 36.01 0.37 -0.35 16 2 C 0.09 1.08 7.21 -81.53 -0.59 0.49 16 3 N -0.52 -6.74 4.73 -5.60 -0.03 -6.76 16 4 H 0.43 4.27 5.73 -40.82 -0.23 4.03 16 5 C -0.03 -0.54 6.41 -82.40 -0.53 -1.07 16 6 C 0.58 12.29 7.55 -12.79 -0.10 12.19 16 7 O -0.52 -12.93 14.50 5.21 0.08 -12.86 16 8 N -0.60 -12.41 2.86 -184.46 -0.53 -12.94 16 9 C 0.06 0.90 9.10 59.85 0.54 1.45 16 10 C 0.25 6.27 5.21 -5.20 -0.03 6.24 16 11 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.04 -0.71 6.20 -104.13 -0.65 -1.35 16 20 C -0.10 -1.62 9.90 36.00 0.36 -1.26 16 21 C -0.22 -3.17 6.01 -105.03 -0.63 -3.80 16 22 C 0.57 7.74 7.51 34.39 0.26 8.00 16 23 O -0.51 -8.12 17.89 -19.28 -0.35 -8.47 16 24 O -0.51 -5.21 13.44 -40.67 -0.55 -5.76 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.65 7.93 -51.92 -0.41 0.24 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.57 7.95 -51.93 -0.41 0.16 16 29 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 30 H 0.06 0.78 4.70 -51.93 -0.24 0.54 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.41 7.35 -51.93 -0.38 1.03 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.73 6.27 -51.93 -0.33 1.41 16 36 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.41 2.08 9.11 45.56 0.42 2.49 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -35.84 321.56 -5.88 -41.72 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.66 Total: 1.89 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.41 Total: 7.06 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.18 Total: -45.09 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.82 Total: -27.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.84 -5.88 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607489933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.902 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds