Wall clock time and date at job start Tue Mar 31 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34223 * 125.80380 * 2 1 4 4 H 0.96998 * 125.38424 * 359.97438 * 3 2 1 5 5 C 1.37795 * 109.23353 * 179.89226 * 3 2 1 6 6 C 1.46817 * 125.83891 * 180.11692 * 5 3 2 7 7 O 1.21671 * 120.00146 * 156.19091 * 6 5 3 8 8 N 1.34778 * 119.99996 * 336.18817 * 6 5 3 9 9 C 1.46498 * 119.99719 * 5.38055 * 8 6 5 10 10 C 1.46496 * 120.00003 * 185.38605 * 8 6 5 11 11 C 1.50699 * 109.47337 * 89.99597 * 10 8 6 12 12 H 1.07999 * 120.00122 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00110 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00041 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00016 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47041 * 90.00506 * 15 13 11 17 17 H 1.48501 * 109.47057 * 210.00574 * 15 13 11 18 18 H 1.48500 * 109.47114 * 330.00332 * 15 13 11 19 19 C 1.36327 * 108.31944 * 0.36929 * 5 3 2 20 20 C 1.50697 * 126.49786 * 179.77889 * 19 5 3 21 21 C 1.38288 * 125.80609 * 180.30077 * 2 1 3 22 22 C 1.47248 * 126.47325 * 359.93792 * 21 2 1 23 23 O 1.21524 * 120.00102 * 90.02056 * 22 21 2 24 24 O 1.34766 * 119.99355 * 270.01699 * 22 21 2 25 25 H 1.08994 * 109.47137 * 269.68920 * 1 2 3 26 26 H 1.09008 * 109.46684 * 149.69600 * 1 2 3 27 27 H 1.08994 * 109.46907 * 29.70056 * 1 2 3 28 28 H 1.09003 * 109.46869 * 92.02943 * 9 8 6 29 29 H 1.09004 * 109.47334 * 212.02358 * 9 8 6 30 30 H 1.09000 * 109.47566 * 332.02252 * 9 8 6 31 31 H 1.09003 * 109.47101 * 209.99810 * 10 8 6 32 32 H 1.08998 * 109.47171 * 329.99966 * 10 8 6 33 33 H 0.96999 * 119.99413 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47218 * 270.02577 * 20 19 5 35 35 H 1.09005 * 109.47077 * 30.03105 * 20 19 5 36 36 H 1.09001 * 109.47386 * 150.01998 * 20 19 5 37 37 H 0.96700 * 116.99256 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2923 1.0886 0.0000 4 1 1.9795 2.0068 -0.0004 5 6 3.6130 0.6956 0.0024 6 6 4.7764 1.5912 0.0057 7 8 5.8456 1.1981 0.4329 8 7 4.6599 2.8489 -0.4647 9 6 3.3484 3.3610 -0.8693 10 6 5.8449 3.7036 -0.5716 11 6 6.4737 3.5231 -1.9292 12 1 6.0344 2.8404 -2.6414 13 6 7.6093 4.2304 -2.2624 14 7 8.1441 5.0623 -1.3954 15 14 8.3884 4.0072 -3.9455 16 1 7.8010 4.9849 -4.8964 17 1 9.8530 4.2315 -3.8467 18 1 8.1305 2.6278 -4.4313 19 6 3.6546 -0.6670 -0.0043 20 6 4.8929 -1.5259 -0.0092 21 6 2.3161 -1.1215 -0.0059 22 6 1.8679 -2.5241 -0.0120 23 8 1.6824 -3.0982 -1.0669 24 8 1.6635 -3.1711 1.1524 25 1 -0.3633 -0.0056 1.0276 26 1 -0.3633 -0.8873 -0.5186 27 1 -0.3633 0.8926 -0.5091 28 1 2.8774 3.8622 -0.0236 29 1 3.4718 4.0694 -1.6886 30 1 2.7200 2.5328 -1.1968 31 1 5.5539 4.7460 -0.4416 32 1 6.5627 3.4277 0.2008 33 1 8.9432 5.5595 -1.6298 34 1 5.1911 -1.7275 -1.0380 35 1 5.6988 -1.0045 0.5073 36 1 4.6843 -2.4670 0.4998 37 1 1.3700 -4.0908 1.0978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607489933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:26 Heat of formation + Delta-G solvation = -97.739240 kcal Electronic energy + Delta-G solvation = -21995.941438 eV Core-core repulsion = 18545.514321 eV Total energy + Delta-G solvation = -3450.427117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97758 -40.87380 -40.00230 -36.98550 -36.88947 -34.87429 -34.05867 -32.82965 -30.02022 -29.19794 -28.32532 -26.88763 -25.61086 -24.32662 -21.66029 -21.17544 -20.27527 -19.00355 -18.73872 -18.52460 -17.38680 -17.16170 -16.89627 -16.40272 -16.29929 -15.79463 -15.50740 -14.60759 -14.59184 -14.29128 -14.19552 -14.09267 -13.87647 -13.81511 -13.48083 -13.31972 -13.18042 -13.08681 -12.76402 -12.67658 -12.53931 -12.47250 -12.23240 -11.85576 -11.75741 -10.88689 -10.65902 -10.00607 -9.62556 -9.17388 -8.25101 -6.39923 0.41640 1.06249 1.07817 1.35845 1.38936 1.49235 1.82261 2.03652 2.25125 2.38457 2.56292 3.05043 3.58963 3.67791 3.97143 3.98263 4.11314 4.43550 4.44323 4.53279 4.62365 4.69033 4.72743 4.74382 4.89511 4.97874 5.05392 5.15074 5.20868 5.44067 5.49953 5.54935 5.63598 5.76281 6.01579 6.27048 6.58446 6.68538 7.02939 7.18674 7.34360 8.81963 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.004359 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.978993 B = 6421.376602 C = 6779.672253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.126 3.874 3 N -0.509 5.509 4 H 0.440 0.560 5 C -0.060 4.060 6 C 0.572 3.428 7 O -0.574 6.574 8 N -0.605 5.605 9 C 0.055 3.945 10 C 0.260 3.740 11 C -0.547 4.547 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.276 1.276 19 C -0.052 4.052 20 C -0.097 4.097 21 C -0.246 4.246 22 C 0.581 3.419 23 O -0.539 6.539 24 O -0.501 6.501 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.319 -9.566 3.922 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.003 3.997 3 N -0.113 5.113 4 H 0.288 0.712 5 C -0.171 4.171 6 C 0.361 3.639 7 O -0.454 6.454 8 N -0.335 5.335 9 C -0.088 4.088 10 C 0.139 3.861 11 C -0.585 4.585 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.059 4.059 20 C -0.155 4.155 21 C -0.253 4.253 22 C 0.424 3.576 23 O -0.429 6.429 24 O -0.314 6.314 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.535 -9.132 3.919 21.917 hybrid contribution 0.837 -0.092 -0.821 1.176 sum -18.698 -9.224 3.098 21.078 Atomic orbital electron populations 1.20766 0.82991 1.05804 1.05637 1.21236 0.95279 0.84124 0.99081 1.42447 1.04026 1.09885 1.54930 0.71187 1.19506 0.83639 0.93469 1.20466 1.17498 0.86863 0.81478 0.78053 1.90735 1.29907 1.75329 1.49461 1.48055 1.10678 1.12892 1.61886 1.22386 0.83376 1.00824 1.02178 1.18845 0.82458 0.88886 0.95874 1.21666 1.11702 1.24884 1.00274 0.93115 1.25794 0.96919 0.94541 1.01441 1.70038 1.22195 1.27479 1.36729 0.85445 0.77701 0.78564 0.79293 1.18714 1.20479 1.20084 1.19624 0.94376 0.91513 1.00430 1.20405 0.94265 0.98433 1.02352 1.18337 0.92974 0.90457 1.23577 1.19768 0.71249 0.85703 0.80842 1.90889 1.49219 1.68762 1.34013 1.84681 1.79451 1.33325 1.33971 0.87316 0.89465 0.87657 0.89455 0.90015 0.89542 0.94986 0.97698 0.92272 0.91606 0.91206 0.90172 0.70800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.24 71.24 0.73 -0.25 16 2 C 0.13 2.63 7.21 42.21 0.30 2.93 16 3 N -0.51 -11.76 4.73 -171.64 -0.81 -12.57 16 4 H 0.44 7.24 5.73 -92.71 -0.53 6.71 16 5 C -0.06 -2.06 6.41 40.01 0.26 -1.80 16 6 C 0.57 25.21 7.55 86.49 0.65 25.87 16 7 O -0.57 -30.50 14.50 -4.26 -0.06 -30.56 16 8 N -0.60 -25.65 2.86 -855.74 -2.44 -28.09 16 9 C 0.05 1.53 9.10 127.77 1.16 2.69 16 10 C 0.26 13.87 5.21 85.63 0.45 14.32 16 11 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 12 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 13 C 0.01 0.72 5.46 84.65 0.46 1.18 16 14 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 15 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 C -0.05 -1.75 6.20 -19.54 -0.12 -1.87 16 20 C -0.10 -3.31 9.90 71.23 0.71 -2.61 16 21 C -0.25 -6.76 6.01 -20.13 -0.12 -6.88 16 22 C 0.58 14.48 7.51 70.19 0.53 15.01 16 23 O -0.54 -16.20 17.89 19.76 0.35 -15.84 16 24 O -0.50 -8.81 13.44 -56.77 -0.76 -9.57 16 25 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.95 7.93 -2.38 -0.02 0.93 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.78 7.95 -2.39 -0.02 1.76 16 29 H 0.08 2.36 8.09 -2.39 -0.02 2.34 16 30 H 0.09 1.96 4.70 -2.39 -0.01 1.95 16 31 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.00 0.30 7.35 -2.39 -0.02 0.28 16 33 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.72 6.27 -2.38 -0.01 2.71 16 36 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 37 H 0.43 3.05 9.11 -74.06 -0.67 2.38 16 Total: -1.00 -82.28 321.56 3.75 -78.53 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -0.08 Total: 8.81 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.25 Total: 17.42 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.97 Total: -95.69 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.47 Total: -55.98 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.28 3.75 -78.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607489933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.210 kcal (2) G-P(sol) polarization free energy of solvation -82.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds