Wall clock time and date at job start Tue Mar 31 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34220 * 125.80705 * 2 1 4 4 H 0.97003 * 125.38075 * 0.02562 * 3 2 1 5 5 C 1.37790 * 109.23498 * 179.83416 * 3 2 1 6 6 C 1.46822 * 125.83611 * 180.21122 * 5 3 2 7 7 O 1.21685 * 119.99426 * 180.25766 * 6 5 3 8 8 N 1.34768 * 120.00381 * 0.26059 * 6 5 3 9 9 C 1.46501 * 120.00269 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47372 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47330 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99595 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00000 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00028 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99701 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46754 * 90.00242 * 15 13 11 17 17 H 1.48498 * 109.46863 * 209.99981 * 15 13 11 18 18 H 1.48498 * 109.47269 * 330.00219 * 15 13 11 19 19 C 1.36322 * 108.32019 * 0.43613 * 5 3 2 20 20 C 1.50702 * 126.49885 * 179.74539 * 19 5 3 21 21 C 1.38282 * 125.80426 * 180.31004 * 2 1 3 22 22 C 1.47249 * 126.47822 * 359.96609 * 21 2 1 23 23 O 1.21528 * 120.00070 * 90.02013 * 22 21 2 24 24 O 1.34768 * 119.99844 * 270.02509 * 22 21 2 25 25 H 1.09002 * 109.47152 * 269.68949 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69049 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69030 * 1 2 3 28 28 H 0.96998 * 120.00223 * 359.97438 * 8 6 5 29 29 H 1.08997 * 109.47117 * 299.99935 * 9 8 6 30 30 H 1.09007 * 109.47012 * 59.99798 * 9 8 6 31 31 H 1.09005 * 109.47333 * 300.00341 * 10 9 8 32 32 H 1.08998 * 109.47207 * 59.99883 * 10 9 8 33 33 H 0.96998 * 119.99690 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.47139 * 270.02130 * 20 19 5 35 35 H 1.09008 * 109.47124 * 30.01968 * 20 19 5 36 36 H 1.08998 * 109.47472 * 150.01798 * 20 19 5 37 37 H 0.96701 * 116.99505 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.0885 0.0000 4 1 1.9795 2.0067 0.0004 5 6 3.6130 0.6955 0.0038 6 6 4.7763 1.5912 0.0094 7 8 5.9012 1.1272 0.0076 8 7 4.5983 2.9270 0.0165 9 6 5.7592 3.8207 0.0227 10 6 5.2834 5.2748 0.0295 11 6 6.4776 6.1941 0.0352 12 1 7.4760 5.7823 0.0345 13 6 6.2954 7.5608 0.0424 14 7 5.0796 8.0621 0.0438 15 14 7.7757 8.7002 0.0502 16 1 8.1693 9.0097 -1.3478 17 1 7.4275 9.9591 0.7567 18 1 8.9068 8.0376 0.7479 19 6 3.6546 -0.6671 -0.0037 20 6 4.8928 -1.5260 -0.0083 21 6 2.3160 -1.1215 -0.0061 22 6 1.8679 -2.5241 -0.0130 23 8 1.6828 -3.0977 -1.0682 24 8 1.6629 -3.1717 1.1510 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 3.7016 3.2969 0.0176 29 1 6.3596 3.6303 0.9123 30 1 6.3615 3.6400 -0.8677 31 1 4.6832 5.4649 -0.8603 32 1 4.6809 5.4557 0.9196 33 1 4.9515 9.0236 0.0493 34 1 5.1917 -1.7272 -1.0371 35 1 5.6985 -1.0048 0.5088 36 1 4.6840 -2.4673 0.5001 37 1 1.3687 -4.0912 1.0958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607490890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:29 Heat of formation + Delta-G solvation = -105.741381 kcal Electronic energy + Delta-G solvation = -21076.658180 eV Core-core repulsion = 17625.884064 eV Total energy + Delta-G solvation = -3450.774116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91337 -39.91942 -38.80211 -36.16271 -35.11422 -33.25561 -32.88119 -31.99137 -29.76888 -28.36717 -26.71612 -24.99850 -23.91615 -21.57457 -20.98251 -20.14561 -19.43018 -18.39879 -18.05072 -16.50359 -16.22962 -15.86224 -15.54898 -15.23389 -14.92000 -14.60031 -14.48309 -13.63542 -13.58820 -13.41252 -13.22749 -13.05153 -12.88824 -12.46635 -12.34699 -12.33996 -11.82344 -11.60259 -11.28999 -11.09302 -10.93488 -10.69991 -10.43081 -9.94868 -9.59880 -9.31188 -9.08633 -8.74020 -8.48488 -8.23338 -6.16094 -4.19069 1.34681 1.94172 1.99527 2.65663 3.12534 3.25711 3.32010 3.35742 3.47559 3.55658 4.36057 4.36871 4.66390 4.89391 5.00006 5.12090 5.17833 5.21442 5.38938 5.45625 5.56453 5.79879 5.93325 6.13295 6.17957 6.25100 6.26654 6.40431 6.61991 6.63912 6.73582 7.04058 7.41865 7.51215 7.73014 7.81208 7.82859 8.19338 8.44331 8.86687 9.46332 10.95552 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.003073 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.574659 B = 9109.734817 C = 9711.158519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.108 3.892 3 N -0.520 5.520 4 H 0.424 0.576 5 C -0.045 4.045 6 C 0.580 3.420 7 O -0.530 6.530 8 N -0.721 5.721 9 C 0.122 3.878 10 C 0.012 3.988 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.032 4.032 20 C -0.095 4.095 21 C -0.219 4.219 22 C 0.570 3.430 23 O -0.508 6.508 24 O -0.510 6.510 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.390 0.610 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -17.867 1.887 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 N -0.116 5.116 4 H 0.263 0.737 5 C -0.156 4.156 6 C 0.366 3.634 7 O -0.407 6.407 8 N -0.370 5.370 9 C 0.000 4.000 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.039 4.039 20 C -0.152 4.152 21 C -0.227 4.227 22 C 0.412 3.588 23 O -0.396 6.396 24 O -0.321 6.321 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.223 0.777 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.611 -17.560 1.620 20.581 hybrid contribution -0.192 0.822 -0.069 0.847 sum -10.803 -16.738 1.551 19.982 Atomic orbital electron populations 1.20558 0.86655 1.04407 1.03881 1.20481 0.93471 0.85085 1.02430 1.41588 1.05608 1.08710 1.55689 0.73698 1.20039 0.82995 0.94027 1.18551 1.17012 0.87056 0.81884 0.77428 1.90796 1.23206 1.75777 1.50939 1.46240 1.11255 1.05484 1.74023 1.21796 0.86192 0.90758 1.01212 1.19332 0.97646 0.87745 0.97779 1.21036 0.92677 0.90906 1.51484 0.92136 1.24997 0.96042 0.98349 0.94876 1.69947 1.20528 1.12560 1.50316 0.86493 0.82692 0.80038 0.78247 1.20515 1.21145 1.19662 1.19480 0.93343 0.91377 0.99734 1.20450 0.94283 0.97576 1.02891 1.18138 0.93625 0.88948 1.21992 1.19985 0.72037 0.86065 0.80743 1.90905 1.47614 1.68231 1.32838 1.84735 1.79979 1.31658 1.35685 0.89514 0.89702 0.90260 0.77675 0.92133 0.92146 0.95987 0.95972 0.92801 0.90855 0.88967 0.92226 0.73372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.24 36.01 0.37 -0.27 16 2 C 0.11 1.12 7.21 -81.53 -0.59 0.53 16 3 N -0.52 -5.52 5.91 -5.61 -0.03 -5.55 16 4 H 0.42 3.30 8.13 -40.82 -0.33 2.97 16 5 C -0.04 -0.64 6.99 -82.41 -0.58 -1.21 16 6 C 0.58 9.84 7.79 -12.79 -0.10 9.74 16 7 O -0.53 -10.55 14.69 5.20 0.08 -10.48 16 8 N -0.72 -12.00 5.55 -61.57 -0.34 -12.34 16 9 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 11 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.03 -0.45 6.21 -104.12 -0.65 -1.10 16 20 C -0.10 -1.27 9.64 36.01 0.35 -0.92 16 21 C -0.22 -2.78 6.01 -105.03 -0.63 -3.41 16 22 C 0.57 6.77 7.51 34.39 0.26 7.02 16 23 O -0.51 -7.27 17.90 -19.29 -0.35 -7.62 16 24 O -0.51 -4.47 13.44 -40.68 -0.55 -5.01 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.39 5.40 7.55 -40.82 -0.31 5.10 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.35 6.41 -51.92 -0.33 1.02 16 36 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.41 1.54 9.11 45.56 0.42 1.96 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -34.48 328.71 -6.55 -41.03 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.89 Total: 3.77 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.14 Total: 0.08 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.36 Total: -42.72 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.82 Total: -23.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.48 -6.55 -41.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607490890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.710 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds