Wall clock time and date at job start Tue Mar 31 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47329 * 311.55642 * 3 2 1 5 5 C 1.37104 * 119.99766 * 95.22540 * 4 3 2 6 6 H 1.07994 * 119.99920 * 315.49024 * 5 4 3 7 7 C 1.38945 * 119.99468 * 135.75856 * 5 4 3 8 8 N 1.31417 * 119.99787 * 162.32300 * 7 5 4 9 9 Si 1.86803 * 120.00461 * 342.32563 * 7 5 4 10 10 H 1.48506 * 109.46924 * 95.37452 * 9 7 5 11 11 H 1.48495 * 109.47094 * 215.37387 * 9 7 5 12 12 H 1.48499 * 109.47013 * 335.37409 * 9 7 5 13 13 C 1.34777 * 120.00258 * 275.23251 * 4 3 2 14 14 O 1.21289 * 119.99793 * 176.18088 * 13 4 3 15 15 C 1.50706 * 119.99648 * 356.17664 * 13 4 3 16 16 H 1.08999 * 109.47414 * 332.99069 * 15 13 4 17 17 C 1.52998 * 109.47065 * 92.99418 * 15 13 4 18 18 C 1.52998 * 109.47072 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.46759 * 299.99894 * 18 17 15 20 20 H 1.09007 * 109.46997 * 299.99661 * 19 18 17 21 21 C 1.50708 * 109.46810 * 180.02562 * 19 18 17 22 22 O 1.20820 * 119.99574 * 239.99695 * 21 19 18 23 23 O 1.34220 * 120.00119 * 59.99668 * 21 19 18 24 24 C 1.52991 * 109.47453 * 60.00088 * 19 18 17 25 25 C 1.53001 * 109.47335 * 299.99978 * 24 19 18 26 26 H 1.09003 * 109.46860 * 191.55544 * 3 2 1 27 27 H 1.08997 * 109.47134 * 71.56306 * 3 2 1 28 28 H 0.97000 * 120.00252 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46702 * 299.99649 * 17 15 13 30 30 H 1.08999 * 109.47289 * 59.99575 * 17 15 13 31 31 H 1.08996 * 109.46961 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.47383 * 59.99666 * 18 17 15 33 33 H 0.96704 * 117.00103 * 179.97438 * 23 21 19 34 34 H 1.09000 * 109.47391 * 179.97438 * 24 19 18 35 35 H 1.09007 * 109.47368 * 59.99800 * 24 19 18 36 36 H 1.08999 * 109.47041 * 300.00034 * 25 24 19 37 37 H 1.08992 * 109.47666 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9153 1.0335 5 6 3.4279 -2.2048 0.7058 6 1 2.7788 -2.7826 0.0646 7 6 4.5957 -2.7700 1.2031 8 7 4.7510 -4.0749 1.1912 9 14 5.9449 -1.6751 1.8889 10 1 5.7970 -1.5714 3.3629 11 1 7.2704 -2.2607 1.5644 12 1 5.8400 -0.3227 1.2845 13 6 3.2209 -0.4906 2.3066 14 8 3.5592 -1.2671 3.1747 15 6 2.9395 0.9493 2.6512 16 1 3.1231 1.5747 1.7775 17 6 1.4793 1.0941 3.0843 18 6 1.1938 2.5557 3.4348 19 6 2.1108 2.9944 4.5784 20 1 1.9271 2.3687 5.4519 21 6 1.8292 4.4340 4.9241 22 8 2.7064 5.2598 4.8332 23 8 0.6038 4.7987 5.3328 24 6 3.5710 2.8497 4.1454 25 6 3.8566 1.3880 3.7948 26 1 2.9709 1.0077 0.2059 27 1 2.9715 -0.3242 -0.9749 28 1 5.5661 -4.4695 1.5387 29 1 0.8261 0.7811 2.2698 30 1 1.2957 0.4687 3.9580 31 1 0.1534 2.6589 3.7429 32 1 1.3775 3.1814 2.5614 33 1 0.4714 5.7331 5.5436 34 1 4.2243 3.1626 4.9598 35 1 3.7548 3.4753 3.2718 36 1 3.6729 0.7623 4.6682 37 1 4.8967 1.2849 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:11 Heat of formation + Delta-G solvation = -123.311485 kcal Electronic energy + Delta-G solvation = -22628.961433 eV Core-core repulsion = 19177.425420 eV Total energy + Delta-G solvation = -3451.536013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75744 -41.03713 -38.54916 -37.75558 -37.05246 -36.14478 -34.27285 -32.50665 -31.82192 -29.30047 -27.25046 -25.27821 -23.72892 -22.78315 -21.38686 -20.57507 -19.56556 -18.96389 -18.49535 -17.76722 -17.64163 -17.07665 -16.82726 -16.15281 -15.48954 -15.16045 -15.12545 -14.97760 -14.80180 -14.54268 -14.36055 -14.00253 -13.80579 -13.44696 -13.34440 -13.12548 -12.93503 -12.66359 -12.55952 -12.48483 -12.39778 -12.12408 -12.08516 -11.90614 -11.46157 -11.31590 -11.16306 -10.78265 -10.34618 -9.77764 -8.39256 -6.20966 1.21894 1.30072 1.41146 1.54475 1.59039 1.82808 1.94753 2.13736 2.44186 2.74919 3.07300 3.25587 3.57167 3.61972 3.76538 3.98148 4.10161 4.18407 4.25365 4.34025 4.47316 4.49031 4.56769 4.71377 4.79250 4.83783 4.99517 5.06360 5.14155 5.16487 5.28228 5.41787 5.65085 5.71672 5.86522 6.57433 6.73156 6.88089 7.03627 7.28611 7.80875 8.70541 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.005931 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.766990 B = 4720.192885 C = 5602.952160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.219 3.781 3 C 0.186 3.814 4 N -0.478 5.478 5 C -0.346 4.346 6 H 0.065 0.935 7 C 0.046 3.954 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.281 1.281 11 H -0.304 1.304 12 H -0.232 1.232 13 C 0.459 3.541 14 O -0.578 6.578 15 C -0.106 4.106 16 H 0.122 0.878 17 C -0.100 4.100 18 C -0.095 4.095 19 C -0.081 4.081 20 H 0.118 0.882 21 C 0.494 3.506 22 O -0.546 6.546 23 O -0.511 6.511 24 C -0.092 4.092 25 C -0.101 4.101 26 H 0.157 0.843 27 H 0.149 0.851 28 H 0.273 0.727 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.427 0.573 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 19.980 3.402 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.099 4.099 3 C 0.060 3.940 4 N -0.201 5.201 5 C -0.473 4.473 6 H 0.082 0.918 7 C -0.159 4.159 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.233 1.233 12 H -0.155 1.155 13 C 0.251 3.749 14 O -0.460 6.460 15 C -0.127 4.127 16 H 0.140 0.860 17 C -0.139 4.139 18 C -0.132 4.132 19 C -0.100 4.100 20 H 0.135 0.865 21 C 0.338 3.662 22 O -0.437 6.437 23 O -0.325 6.325 24 C -0.129 4.129 25 C -0.139 4.139 26 H 0.175 0.825 27 H 0.166 0.834 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.288 0.712 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.745 19.238 3.728 20.162 hybrid contribution 0.938 -0.137 0.512 1.077 sum -3.807 19.100 4.240 19.932 Atomic orbital electron populations 1.81116 1.14325 1.10134 1.09717 1.30384 0.96217 0.91587 0.91742 1.19685 0.79422 0.98218 0.96683 1.43753 1.59656 1.10801 1.05869 1.18666 1.06123 0.88267 1.34216 0.91770 1.25967 0.99812 0.96009 0.94096 1.69839 1.27955 1.11997 1.45217 0.85743 0.76644 0.80909 0.79326 1.20804 1.23277 1.15480 1.21488 0.79742 0.91463 0.82240 1.90548 1.49589 1.58052 1.47837 1.21514 0.97870 0.91732 1.01582 0.86016 1.21399 0.93300 0.97583 1.01584 1.21439 0.99612 0.94776 0.97417 1.21137 0.97869 0.89107 1.01897 0.86455 1.23496 0.79326 0.91769 0.71594 1.90711 1.47425 1.54437 1.51090 1.84520 1.33044 1.36933 1.77972 1.21365 0.93411 0.95161 1.02985 1.21373 0.98670 0.96177 0.97668 0.82549 0.83356 0.91796 0.92032 0.92244 0.89223 0.89599 0.71157 0.90524 0.89793 0.92053 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.29 18.25 20.01 0.37 -15.92 16 2 C 0.22 6.65 13.80 89.44 1.23 7.88 16 3 C 0.19 5.00 5.67 84.57 0.48 5.48 16 4 N -0.48 -19.49 2.11 -645.42 -1.36 -20.85 16 5 C -0.35 -18.10 9.62 84.04 0.81 -17.29 16 6 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 7 C 0.05 2.55 4.89 84.92 0.41 2.97 16 8 N -0.91 -55.27 13.96 21.66 0.30 -54.97 16 9 Si 0.95 45.24 24.83 68.60 1.70 46.95 16 10 H -0.28 -14.54 6.50 99.48 0.65 -13.90 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.23 -9.35 7.11 99.48 0.71 -8.64 16 13 C 0.46 18.75 4.67 87.66 0.41 19.16 16 14 O -0.58 -29.65 12.30 -3.06 -0.04 -29.69 16 15 C -0.11 -2.95 1.94 -11.54 -0.02 -2.98 16 16 H 0.12 2.49 5.86 -2.39 -0.01 2.48 16 17 C -0.10 -2.54 5.18 30.59 0.16 -2.38 16 18 C -0.09 -1.71 5.14 30.60 0.16 -1.55 16 19 C -0.08 -1.48 2.63 -11.54 -0.03 -1.51 16 20 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 21 C 0.49 9.09 7.63 71.24 0.54 9.63 16 22 O -0.55 -13.21 16.74 21.98 0.37 -12.84 16 23 O -0.51 -6.80 13.33 -51.32 -0.68 -7.48 16 24 C -0.09 -1.86 4.49 30.59 0.14 -1.72 16 25 C -0.10 -2.70 4.84 30.60 0.15 -2.55 16 26 H 0.16 2.64 5.91 -2.39 -0.01 2.62 16 27 H 0.15 3.40 8.00 -2.39 -0.02 3.38 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.06 1.70 5.77 -2.39 -0.01 1.68 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.43 2.06 9.10 -74.05 -0.67 1.39 16 34 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.08 1.56 8.10 -2.38 -0.02 1.54 16 36 H 0.06 1.86 7.85 -2.39 -0.02 1.85 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -78.18 308.46 5.47 -72.71 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.38 Total: 6.96 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 4.44 Total: 15.14 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -0.70 Total: -91.74 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.35 Total: -50.01 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.70 Total: 46.95 kcal Total: -78.18 5.47 -72.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.597 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds