Wall clock time and date at job start Tue Mar 31 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86795 * 120.00257 * 2 1 4 4 H 1.48499 * 109.47260 * 270.00344 * 3 2 1 5 5 H 1.48504 * 109.46994 * 30.00316 * 3 2 1 6 6 H 1.48497 * 109.47134 * 150.00122 * 3 2 1 7 7 C 1.39934 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99936 * 196.82425 * 7 2 1 9 9 C 1.41416 * 119.99921 * 16.81910 * 7 2 1 10 10 C 1.40772 * 120.20895 * 25.56209 * 9 7 2 11 11 C 1.37648 * 119.88270 * 180.31897 * 10 9 7 12 12 C 1.38526 * 120.31993 * 359.43001 * 11 10 9 13 13 C 1.39251 * 120.42910 * 0.29915 * 12 11 10 14 14 N 1.39951 * 119.94568 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99895 * 215.65944 * 14 13 12 16 16 O 1.21583 * 120.00017 * 355.53909 * 15 14 13 17 17 N 1.34779 * 120.00077 * 175.53897 * 15 14 13 18 18 C 1.46496 * 119.99965 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47253 * 85.00018 * 18 17 15 20 20 O 1.42904 * 109.46554 * 64.99708 * 19 18 17 21 21 C 1.52999 * 109.47131 * 205.00251 * 18 17 15 22 22 O 1.42902 * 109.47162 * 294.99818 * 21 18 17 23 23 C 1.38270 * 120.10390 * 0.02562 * 13 12 11 24 24 H 0.96998 * 119.99954 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.06264 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.83796 * 179.71082 * 11 10 9 27 27 H 1.07997 * 119.78628 * 180.28232 * 12 11 10 28 28 H 0.96997 * 120.00279 * 35.65998 * 14 13 12 29 29 H 0.97003 * 119.99790 * 0.02562 * 17 15 14 30 30 H 1.08997 * 109.47402 * 325.00204 * 18 17 15 31 31 H 1.08994 * 109.47206 * 184.99795 * 19 18 17 32 32 H 1.08997 * 109.47226 * 305.00483 * 19 18 17 33 33 H 0.96702 * 113.99950 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.47292 * 54.99746 * 21 18 17 35 35 H 1.09001 * 109.47286 * 174.99912 * 21 18 17 36 36 H 0.96697 * 114.00239 * 179.97438 * 22 21 18 37 37 H 1.08009 * 120.15952 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4400 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2702 9 6 1.3462 -2.4102 -0.3554 10 6 0.2162 -2.3737 -1.1942 11 6 -0.4266 -3.5435 -1.5300 12 6 0.0399 -4.7588 -1.0562 13 6 1.1598 -4.8107 -0.2303 14 7 1.6221 -6.0440 0.2431 15 6 2.1441 -6.1374 1.4822 16 8 2.2881 -5.1371 2.1582 17 7 2.5063 -7.3397 1.9720 18 6 3.0741 -7.4411 3.3186 19 6 1.9420 -7.5282 4.3442 20 8 1.2142 -8.7423 4.1483 21 6 3.9444 -8.6960 3.4119 22 8 3.1248 -9.8566 3.2588 23 6 1.8152 -3.6458 0.1236 24 1 -0.4850 0.8400 0.0004 25 1 -0.1485 -1.4290 -1.5697 26 1 -1.2963 -3.5142 -2.1698 27 1 -0.4685 -5.6718 -1.3288 28 1 1.5670 -6.8314 -0.3206 29 1 2.3917 -8.1377 1.4325 30 1 3.6830 -6.5606 3.5236 31 1 2.3613 -7.5142 5.3502 32 1 1.2714 -6.6782 4.2182 33 1 0.4799 -8.8647 4.7655 34 1 4.6967 -8.6759 2.6234 35 1 4.4373 -8.7249 4.3837 36 1 3.6114 -10.6908 3.3069 37 1 2.6837 -3.6850 0.7645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624875571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:40 Heat of formation + Delta-G solvation = -100.907186 kcal Electronic energy + Delta-G solvation = -21618.660047 eV Core-core repulsion = 18168.095557 eV Total energy + Delta-G solvation = -3450.564490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99531 -38.10252 -36.97607 -35.99605 -34.41551 -33.97979 -32.93189 -30.07406 -29.73209 -27.56545 -25.78592 -25.20645 -22.27930 -20.87713 -20.50544 -20.01584 -18.25743 -17.58037 -17.44460 -16.83600 -16.20600 -15.37107 -15.20910 -14.85589 -14.52471 -14.22728 -13.99614 -13.67728 -13.48493 -13.02027 -12.83444 -12.32628 -12.19021 -12.02784 -11.59343 -11.27463 -11.11027 -11.06847 -10.59031 -10.43424 -10.20626 -10.08584 -9.82407 -9.66014 -9.45643 -9.12760 -8.80455 -8.76698 -7.35287 -6.79705 -6.64251 -4.25506 2.81017 2.95484 3.10719 3.13696 3.18258 3.27608 3.77289 4.02313 4.10610 4.35815 4.62645 4.71985 4.80068 5.06274 5.18558 5.38087 5.44997 5.69892 5.80845 5.84512 6.32037 6.49242 6.69578 6.89654 6.92498 7.12826 7.20131 7.32689 7.45689 7.52539 7.73818 7.78164 7.94116 8.08449 8.18686 8.34216 8.55318 8.74889 8.98501 9.06050 9.15400 10.30362 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.003915 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.095977 B = 7149.454321 C = 7735.679660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.174 4.174 11 C -0.093 4.093 12 C -0.263 4.263 13 C 0.167 3.833 14 N -0.681 5.681 15 C 0.697 3.303 16 O -0.570 6.570 17 N -0.736 5.736 18 C 0.169 3.831 19 C 0.064 3.936 20 O -0.543 6.543 21 C 0.072 3.928 22 O -0.542 6.542 23 C -0.209 4.209 24 H 0.279 0.721 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.399 0.601 30 H 0.111 0.889 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.365 0.635 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.368 0.632 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -15.299 5.337 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.194 4.194 11 C -0.112 4.112 12 C -0.284 4.284 13 C 0.074 3.926 14 N -0.327 5.327 15 C 0.397 3.603 16 O -0.446 6.446 17 N -0.392 5.392 18 C 0.063 3.937 19 C -0.015 4.015 20 O -0.346 6.346 21 C -0.007 4.007 22 O -0.345 6.345 23 C -0.230 4.230 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.233 0.767 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.210 0.790 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.213 0.787 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.148 -13.833 5.478 15.744 hybrid contribution 0.194 -0.307 0.134 0.387 sum 5.341 -14.140 5.613 16.124 Atomic orbital electron populations 1.69843 1.07520 1.28967 1.35817 1.25884 0.94714 1.01174 0.92356 0.86315 0.80522 0.80691 0.79171 1.19355 1.20403 1.18665 1.19554 0.97781 0.91015 1.40493 0.90507 1.17515 0.91077 0.91723 0.88146 1.21322 0.99719 0.96740 1.01589 1.20437 0.98389 0.92673 0.99663 1.20034 1.00251 0.96879 1.11280 1.17257 0.94414 0.83135 0.97767 1.42545 1.64601 1.11190 1.14366 1.16042 0.78743 0.83627 0.81880 1.90970 1.59552 1.34718 1.59321 1.44977 1.69211 1.07940 1.17095 1.20976 0.93516 0.97246 0.81957 1.22543 0.94424 0.87644 0.96900 1.86714 1.47727 1.39950 1.60239 1.22357 0.92348 0.86055 0.99930 1.86797 1.36602 1.14991 1.96115 1.21106 1.04143 0.91201 1.06599 0.91042 0.86476 0.89128 0.89410 0.77266 0.76704 0.87125 0.93636 0.92968 0.79026 0.93266 0.92658 0.78711 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.47 10.97 55.55 0.61 -20.86 16 2 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 3 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.90 9.05 -37.74 -0.34 -13.24 16 8 H 0.08 2.11 7.90 -52.49 -0.41 1.69 16 9 C 0.12 3.35 5.56 -106.85 -0.59 2.75 16 10 C -0.17 -4.69 8.68 -38.84 -0.34 -5.03 16 11 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 12 C -0.26 -6.03 9.97 -39.10 -0.39 -6.42 16 13 C 0.17 3.94 6.28 -83.76 -0.53 3.42 16 14 N -0.68 -12.98 5.34 -14.27 -0.08 -13.05 16 15 C 0.70 13.42 8.37 -86.91 -0.73 12.69 16 16 O -0.57 -13.50 13.47 5.29 0.07 -13.43 16 17 N -0.74 -10.59 5.01 -58.68 -0.29 -10.89 16 18 C 0.17 2.13 2.86 -67.93 -0.19 1.93 16 19 C 0.06 0.81 6.85 37.16 0.25 1.06 16 20 O -0.54 -6.59 11.17 -58.58 -0.65 -7.24 16 21 C 0.07 0.65 6.79 37.16 0.25 0.90 16 22 O -0.54 -5.12 10.95 -58.58 -0.64 -5.76 16 23 C -0.21 -5.61 8.43 -38.69 -0.33 -5.94 16 24 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 25 H 0.12 3.23 6.20 -52.48 -0.33 2.90 16 26 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 27 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.39 5.94 8.84 -40.82 -0.36 5.57 16 29 H 0.40 5.01 8.40 -40.82 -0.34 4.66 16 30 H 0.11 1.47 7.58 -51.93 -0.39 1.08 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.36 3.09 9.12 45.56 0.42 3.50 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.37 1.87 9.12 45.56 0.42 2.28 16 37 H 0.11 3.12 6.26 -52.48 -0.33 2.79 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -34.58 316.22 -7.67 -42.26 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -3.01 Total: 18.33 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.42 Total: -8.59 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.24 Total: -44.80 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -1.22 Total: -26.44 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.58 -7.67 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624875571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.652 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds