Wall clock time and date at job start Tue Mar 31 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27478 * 124.86412 * 2 1 4 4 N 1.38803 * 116.83254 * 179.97438 * 3 2 1 5 5 C 1.35158 * 113.43199 * 359.97438 * 4 3 2 6 6 N 1.32314 * 108.84468 * 180.02562 * 5 4 3 7 7 C 1.33836 * 109.09614 * 359.70486 * 6 5 4 8 8 C 1.50694 * 125.82831 * 180.32158 * 7 6 5 9 9 C 1.34478 * 108.34504 * 0.46412 * 7 6 5 10 10 C 1.50699 * 126.41995 * 179.81764 * 9 7 6 11 11 N 1.46899 * 109.47386 * 269.68810 * 10 9 7 12 12 C 1.46894 * 111.00313 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46828 * 35.00794 * 12 11 10 14 14 C 1.52997 * 109.47515 * 275.00230 * 12 11 10 15 15 C 1.50706 * 109.47162 * 154.99823 * 12 11 10 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46848 * 60.00326 * 19 17 15 21 21 H 1.48500 * 109.47035 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47237 * 300.00475 * 19 17 15 23 23 S 1.75768 * 124.86613 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47390 * 300.02600 * 1 2 3 26 26 H 1.09000 * 109.47076 * 60.02768 * 1 2 3 27 27 H 1.09001 * 109.47055 * 270.16782 * 8 7 6 28 28 H 1.09002 * 109.47051 * 30.16558 * 8 7 6 29 29 H 1.09003 * 109.47450 * 150.16709 * 8 7 6 30 30 H 1.09003 * 109.47245 * 149.69039 * 10 9 7 31 31 H 1.09003 * 109.47237 * 29.69080 * 10 9 7 32 32 H 1.00902 * 111.00123 * 303.96056 * 11 10 9 33 33 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 34 34 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 36 36 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2357 1.0460 0.0000 4 7 3.6101 0.8520 0.0006 5 6 3.9690 -0.4510 0.0016 6 7 5.2898 -0.5305 0.0026 7 6 5.8028 0.7056 -0.0043 8 6 7.2694 1.0519 -0.0125 9 6 4.7862 1.5858 0.0006 10 6 4.9036 3.0883 -0.0003 11 7 4.9411 3.5774 1.3844 12 6 5.0560 5.0413 1.4227 13 1 4.4990 5.4714 0.5904 14 6 6.5288 5.4404 1.3112 15 6 4.4932 5.5556 2.7227 16 1 4.0908 4.8639 3.4480 17 6 4.4930 6.9088 2.9865 18 7 4.9835 7.7510 2.1035 19 14 3.7960 7.5462 4.5981 20 1 4.5550 6.9598 5.7319 21 1 3.9121 9.0261 4.6368 22 1 2.3664 7.1592 4.7067 23 16 2.5118 -1.4422 0.0006 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 7.6286 1.1362 1.0132 28 1 7.8248 0.2689 -0.5287 29 1 7.4158 2.0012 -0.5278 30 1 4.0448 3.5195 -0.5148 31 1 5.8194 3.3809 -0.5139 32 1 4.1327 3.2641 1.9006 33 1 6.9359 5.0685 0.3709 34 1 7.0858 5.0103 2.1437 35 1 6.6140 6.5268 1.3392 36 1 4.9830 8.7031 2.2888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:59 Heat of formation + Delta-G solvation = 119.524162 kcal Electronic energy + Delta-G solvation = -19373.791674 eV Core-core repulsion = 16407.831428 eV Total energy + Delta-G solvation = -2965.960247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44722 -38.09642 -36.01632 -32.98870 -32.87817 -31.02825 -29.77136 -28.34920 -26.40702 -25.35959 -24.39221 -23.21330 -20.40765 -20.07075 -19.82369 -18.60280 -16.51530 -16.46260 -16.11275 -14.97120 -14.60592 -14.41077 -14.25498 -13.79270 -13.50296 -13.19062 -13.07945 -12.96964 -12.63125 -12.27630 -12.16162 -11.77424 -11.73323 -11.21629 -10.91456 -10.85058 -10.80126 -10.47620 -10.37372 -10.15815 -10.06960 -9.88849 -9.03473 -8.88293 -8.50470 -7.88552 -7.35688 -6.05206 -4.11762 0.40093 0.74921 1.10667 1.79663 1.96455 2.86253 3.29435 3.33734 3.36905 3.92337 4.38192 4.40881 4.78299 4.94682 4.98814 5.18025 5.25824 5.36035 5.38707 5.51883 5.66446 5.89638 5.99212 6.10293 6.12294 6.32438 6.66113 6.83055 7.09690 7.17285 7.30561 7.44142 7.71998 7.74755 7.84282 8.22126 8.31062 8.57876 8.96599 9.53982 11.01041 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.004653 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.411630 B = 6015.867071 C = 7094.610016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.089 3.911 3 N -0.236 5.236 4 N -0.307 5.307 5 C 0.093 3.907 6 N -0.435 5.435 7 C 0.048 3.952 8 C -0.060 4.060 9 C 0.049 3.951 10 C 0.133 3.867 11 N -0.679 5.679 12 C 0.212 3.788 13 H 0.002 0.998 14 C -0.124 4.124 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.278 1.278 23 S 0.152 5.848 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.331 0.669 33 H 0.005 0.995 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -16.200 -6.484 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.210 4.210 3 N -0.048 5.048 4 N -0.084 5.084 5 C -0.274 4.274 6 N -0.160 5.160 7 C -0.084 4.084 8 C -0.118 4.118 9 C -0.066 4.066 10 C 0.003 3.997 11 N -0.310 5.310 12 C 0.105 3.895 13 H 0.019 0.981 14 C -0.182 4.182 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.204 1.204 23 S 0.387 5.613 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.831 -16.980 -6.444 19.074 hybrid contribution -1.350 1.900 0.655 2.421 sum -7.181 -15.080 -5.789 17.677 Atomic orbital electron populations 1.20568 0.81758 1.04968 1.05882 1.28414 1.02327 0.91320 0.98956 1.73682 0.87208 1.24973 1.18905 1.47710 1.01658 1.06506 1.52572 1.26301 0.98404 0.87045 1.15668 1.70423 1.01376 1.24453 1.19723 1.20596 0.96372 0.86534 1.04924 1.20098 0.86646 1.01668 1.03436 1.21415 0.79272 0.96022 1.09888 1.20393 1.01361 0.84016 0.93979 1.60846 1.46329 1.15170 1.08660 1.19142 0.93868 0.80108 0.96348 0.98051 1.21720 0.96939 1.03093 0.96498 1.21178 1.39865 0.92043 1.02640 0.92410 1.24894 0.95241 0.96777 0.96937 1.69877 1.45524 1.02708 1.34687 0.86574 0.79453 0.77594 0.83861 1.20150 1.21212 1.20402 1.85136 0.89184 1.03855 1.83156 0.88668 0.87934 0.88094 0.90166 0.91124 0.90411 0.94909 0.88741 0.85242 0.97581 0.94762 0.89994 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.49 36.01 0.38 -0.03 16 2 C 0.09 0.99 7.58 -14.09 -0.11 0.89 16 3 N -0.24 -3.71 11.97 32.87 0.39 -3.31 16 4 N -0.31 -5.49 4.41 -8.74 -0.04 -5.53 16 5 C 0.09 1.57 9.00 -88.74 -0.80 0.77 16 6 N -0.43 -7.87 11.32 -9.76 -0.11 -7.99 16 7 C 0.05 0.85 7.06 -83.05 -0.59 0.26 16 8 C -0.06 -0.86 10.21 36.00 0.37 -0.49 16 9 C 0.05 0.91 6.77 -80.85 -0.55 0.36 16 10 C 0.13 2.58 5.81 -4.98 -0.03 2.55 16 11 N -0.68 -15.12 6.29 -109.22 -0.69 -15.81 16 12 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 13 H 0.00 0.05 7.80 -51.93 -0.41 -0.35 16 14 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 15 C -0.52 -14.40 8.59 -34.44 -0.30 -14.70 16 16 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.35 11.32 55.43 0.63 -24.73 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 S 0.15 1.74 23.35 -107.50 -2.51 -0.77 16 24 H 0.09 0.29 8.14 -51.92 -0.42 -0.14 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.03 7.12 -51.93 -0.37 0.66 16 30 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.09 1.72 6.42 -51.93 -0.33 1.38 16 32 H 0.33 7.64 8.22 -39.29 -0.32 7.32 16 33 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -32.62 318.06 -8.73 -41.35 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.62 Total: 1.80 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.55 Total: -6.19 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.18 Total: -57.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.62 -8.73 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.872 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds