Wall clock time and date at job start Tue Mar 31 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27486 * 124.87076 * 2 1 4 4 N 1.38791 * 116.83647 * 180.02562 * 3 2 1 5 5 C 1.35163 * 113.43420 * 0.02562 * 4 3 2 6 6 N 1.32322 * 108.84499 * 180.02562 * 5 4 3 7 7 C 1.33835 * 109.09250 * 359.70379 * 6 5 4 8 8 C 1.50702 * 125.82320 * 180.32441 * 7 6 5 9 9 C 1.34466 * 108.35074 * 0.46135 * 7 6 5 10 10 C 1.50706 * 126.42560 * 179.82036 * 9 7 6 11 11 N 1.46897 * 109.46900 * 269.69379 * 10 9 7 12 12 C 1.46897 * 110.99772 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47329 * 325.00012 * 12 11 10 14 14 C 1.53001 * 109.47337 * 84.99731 * 12 11 10 15 15 C 1.50704 * 109.47370 * 204.99631 * 12 11 10 16 16 H 1.08004 * 119.99337 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00265 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99818 * 180.02562 * 17 15 12 19 19 Si 1.86795 * 120.00009 * 359.97438 * 17 15 12 20 20 H 1.48495 * 109.47245 * 90.00247 * 19 17 15 21 21 H 1.48501 * 109.47010 * 210.00462 * 19 17 15 22 22 H 1.48497 * 109.47189 * 330.00262 * 19 17 15 23 23 S 1.75772 * 124.86332 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47218 * 300.02679 * 1 2 3 26 26 H 1.08998 * 109.47074 * 60.02499 * 1 2 3 27 27 H 1.09004 * 109.46431 * 270.16326 * 8 7 6 28 28 H 1.09002 * 109.47023 * 30.16097 * 8 7 6 29 29 H 1.08997 * 109.47198 * 150.16568 * 8 7 6 30 30 H 1.09000 * 109.46646 * 29.68487 * 10 9 7 31 31 H 1.09000 * 109.47248 * 149.69205 * 10 9 7 32 32 H 1.00899 * 110.99868 * 303.94765 * 11 10 9 33 33 H 1.08998 * 109.47143 * 300.00212 * 14 12 11 34 34 H 1.09002 * 109.47107 * 59.99757 * 14 12 11 35 35 H 1.09005 * 109.47516 * 179.97438 * 14 12 11 36 36 H 0.97004 * 119.99905 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2358 1.0459 0.0000 4 7 3.6101 0.8520 -0.0006 5 6 3.9691 -0.4511 -0.0016 6 7 5.2899 -0.5306 -0.0015 7 6 5.8029 0.7055 -0.0069 8 6 7.2695 1.0518 -0.0156 9 6 4.7864 1.5857 -0.0003 10 6 4.9037 3.0882 0.0007 11 7 4.9421 3.5753 1.3860 12 6 5.0570 5.0393 1.4262 13 1 5.6747 5.3782 0.5946 14 6 3.6646 5.6634 1.3146 15 6 5.6923 5.4578 2.7271 16 1 5.9813 4.7109 3.4518 17 6 5.9036 6.7942 2.9927 18 7 6.4584 7.1593 4.1278 19 14 5.4030 8.0859 1.7397 20 1 4.0040 8.5110 1.9988 21 1 6.3057 9.2597 1.8512 22 1 5.5014 7.5139 0.3728 23 16 2.5117 -1.4422 0.0006 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 7.6293 1.1346 1.0100 28 1 7.8245 0.2694 -0.5333 29 1 7.4155 2.0017 -0.5297 30 1 5.8192 3.3814 -0.5130 31 1 4.0446 3.5201 -0.5126 32 1 4.1340 3.2615 1.9022 33 1 3.2051 5.3608 0.3737 34 1 3.0468 5.3245 2.1462 35 1 3.7498 6.7497 1.3449 36 1 6.6074 8.0995 4.3145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663171075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:02 Heat of formation + Delta-G solvation = 104.375281 kcal Electronic energy + Delta-G solvation = -19436.803984 eV Core-core repulsion = 16470.186833 eV Total energy + Delta-G solvation = -2966.617152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.66577 -39.20146 -38.11901 -34.79376 -33.91581 -33.02608 -31.02529 -30.12371 -27.72805 -27.16040 -25.93970 -24.41522 -22.17807 -21.59345 -21.13727 -19.88232 -18.72228 -17.68731 -17.25629 -17.00128 -16.27252 -15.67760 -15.42963 -15.09672 -15.00901 -14.75355 -14.39208 -14.07771 -13.94334 -13.77031 -13.60694 -13.54360 -13.25448 -12.92730 -12.86344 -12.73624 -12.48708 -12.04245 -11.79897 -11.59785 -11.44758 -11.29560 -11.16640 -10.76547 -10.20260 -9.25742 -9.00205 -8.27146 -6.30482 -0.62444 -0.27262 0.06460 0.69563 0.77388 1.29993 1.35647 1.46046 1.55902 2.31985 2.81670 3.06531 3.47162 3.59789 3.70726 3.85072 4.09051 4.19348 4.35963 4.47467 4.52015 4.59271 4.63084 4.65482 4.82454 4.85891 4.90307 4.95977 4.98369 5.06673 5.29123 5.46549 5.62519 5.92374 6.17892 6.45872 6.49115 6.61202 6.76113 7.33993 8.90346 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.004551 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.016794 B = 6150.587108 C = 6928.530000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.108 3.892 3 N -0.284 5.284 4 N -0.318 5.318 5 C 0.072 3.928 6 N -0.466 5.466 7 C 0.046 3.954 8 C -0.061 4.061 9 C 0.016 3.984 10 C 0.142 3.858 11 N -0.672 5.672 12 C 0.189 3.811 13 H 0.040 0.960 14 C -0.175 4.175 15 C -0.504 4.504 16 H 0.033 0.967 17 C 0.011 3.989 18 N -0.950 5.950 19 Si 0.952 3.048 20 H -0.269 1.269 21 H -0.297 1.297 22 H -0.246 1.246 23 S 0.214 5.786 24 H 0.129 0.871 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.328 0.672 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -16.308 -13.501 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.189 4.189 3 N -0.098 5.098 4 N -0.093 5.093 5 C -0.295 4.295 6 N -0.192 5.192 7 C -0.087 4.087 8 C -0.118 4.118 9 C -0.099 4.099 10 C 0.012 3.988 11 N -0.301 5.301 12 C 0.080 3.920 13 H 0.058 0.942 14 C -0.234 4.234 15 C -0.542 4.542 16 H 0.051 0.949 17 C -0.186 4.186 18 N -0.591 5.591 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.225 1.225 22 H -0.170 1.170 23 S 0.449 5.551 24 H 0.147 0.853 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.059 -17.188 -13.337 25.374 hybrid contribution -0.691 2.328 -0.040 2.429 sum -13.750 -14.859 -13.378 24.266 Atomic orbital electron populations 1.21001 0.77678 1.07677 1.07045 1.29481 1.04102 0.90467 0.94856 1.73772 0.86069 1.26838 1.23092 1.47884 1.02646 1.06544 1.52233 1.27330 0.99460 0.88419 1.14279 1.70432 1.02472 1.24774 1.21473 1.21076 0.97491 0.86565 1.03599 1.20186 0.85408 1.02764 1.03473 1.21204 0.80279 0.95572 1.12882 1.20321 1.02028 0.84991 0.91467 1.60569 1.46611 1.11869 1.11076 1.19457 0.92348 0.84058 0.96137 0.94187 1.22710 0.99863 1.00366 1.00472 1.21177 1.38620 0.92108 1.02321 0.94892 1.25796 0.94972 1.00688 0.97138 1.70047 1.45875 1.17372 1.25821 0.85808 0.77485 0.78081 0.80696 1.19515 1.22480 1.16986 1.85002 0.85929 1.02423 1.81754 0.85255 0.86801 0.86352 0.90774 0.89456 0.89399 0.87507 0.94544 0.85564 0.92568 0.93164 0.94050 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.49 71.24 0.75 0.33 16 2 C 0.11 1.94 7.58 88.74 0.67 2.61 16 3 N -0.28 -7.84 11.97 -49.04 -0.59 -8.43 16 4 N -0.32 -10.57 4.42 -181.53 -0.80 -11.37 16 5 C 0.07 2.31 9.00 179.69 1.62 3.93 16 6 N -0.47 -16.53 11.32 -184.78 -2.09 -18.62 16 7 C 0.05 1.57 7.06 41.39 0.29 1.86 16 8 C -0.06 -1.72 10.21 71.24 0.73 -0.99 16 9 C 0.02 0.56 6.77 40.62 0.28 0.84 16 10 C 0.14 5.00 5.81 85.56 0.50 5.50 16 11 N -0.67 -28.40 6.22 -499.46 -3.11 -31.51 16 12 C 0.19 8.81 2.17 44.17 0.10 8.90 16 13 H 0.04 1.85 6.86 -2.39 -0.02 1.83 16 14 C -0.18 -7.31 8.64 71.98 0.62 -6.68 16 15 C -0.50 -29.17 9.42 25.60 0.24 -28.93 16 16 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 17 C 0.01 0.64 5.45 84.65 0.46 1.10 16 18 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 19 Si 0.95 44.56 24.37 68.60 1.67 46.23 16 20 H -0.27 -12.00 6.87 99.48 0.68 -11.32 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.25 -10.51 6.53 99.48 0.65 -9.86 16 23 S 0.21 4.13 23.35 -56.49 -1.32 2.82 16 24 H 0.13 -0.09 8.14 -2.38 -0.02 -0.11 16 25 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.26 7.12 -2.39 -0.02 2.24 16 30 H 0.11 3.48 7.04 -2.39 -0.02 3.46 16 31 H 0.04 1.25 7.44 -2.39 -0.02 1.24 16 32 H 0.33 14.10 8.46 -89.69 -0.76 13.34 16 33 H 0.06 2.00 7.45 -2.39 -0.02 1.98 16 34 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 35 H 0.04 1.76 3.27 -2.38 -0.01 1.75 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -77.00 311.57 0.59 -76.40 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.28 Total: 15.73 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 6.25 Total: -11.53 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -6.29 Total: -129.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.32 Total: 2.82 kcal Total: -77.00 0.59 -76.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.780 kcal (2) G-P(sol) polarization free energy of solvation -76.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds