Wall clock time and date at job start Tue Mar 31 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 C 1.53004 * 113.73988 * 269.15247 * 11 10 9 13 13 N 1.46501 * 109.46877 * 183.07251 * 12 11 10 14 14 C 1.34779 * 119.99823 * 180.02562 * 13 12 11 15 15 O 1.21275 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99677 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46731 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46894 * 179.97438 * 17 16 14 19 19 F 1.39890 * 109.47385 * 59.99949 * 18 17 16 20 20 F 1.39898 * 109.46890 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.46899 * 299.99815 * 18 17 16 22 22 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 23 23 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 25 25 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 26 26 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 27 27 H 1.08998 * 109.46823 * 303.07465 * 12 11 10 28 28 H 1.08998 * 109.46745 * 63.07477 * 12 11 10 29 29 H 0.97000 * 119.99767 * 0.02562 * 13 12 11 30 30 H 1.09002 * 109.46960 * 299.99752 * 16 14 13 31 31 H 1.08997 * 109.47295 * 59.99878 * 16 14 13 32 32 H 1.08998 * 109.46823 * 299.99864 * 17 16 14 33 33 H 1.08998 * 109.46745 * 59.99877 * 17 16 14 34 34 H 1.08999 * 113.77157 * 90.38334 * 22 9 7 35 35 H 1.09002 * 113.84143 * 318.91597 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 6 0.3629 -4.0572 2.1671 13 7 -0.9679 -4.3990 2.6756 14 6 -1.1920 -4.4384 4.0040 15 8 -0.2920 -4.1913 4.7784 16 6 -2.5608 -4.7905 4.5270 17 6 -2.5444 -4.7644 6.0567 18 6 -3.9342 -5.1213 6.5878 19 9 -4.2874 -6.4011 6.1470 20 9 -3.9194 -5.0968 7.9865 21 9 -4.8668 -4.1915 6.1154 22 6 -0.1058 -2.7570 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.5619 -4.0327 0.6538 25 1 1.8325 -4.2346 -0.9996 26 1 -0.1594 -4.9598 0.2327 27 1 1.0896 -4.7815 2.5350 28 1 0.6380 -3.0600 2.5105 29 1 -1.6876 -4.5970 2.0561 30 1 -3.2878 -4.0667 4.1586 31 1 -2.8353 -5.7880 4.1840 32 1 -1.8175 -5.4884 6.4247 33 1 -2.2697 -3.7670 6.4001 34 1 -0.5312 -2.8713 -0.9969 35 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665267862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:42 Heat of formation + Delta-G solvation = -149.803855 kcal Electronic energy + Delta-G solvation = -21696.903532 eV Core-core repulsion = 17702.361984 eV Total energy + Delta-G solvation = -3994.541549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.31946 -47.81784 -47.79234 -39.71176 -38.08329 -34.37557 -33.87647 -32.16051 -28.97225 -27.37060 -25.50798 -24.82034 -22.89670 -22.15492 -20.38892 -18.98791 -18.78126 -18.38699 -17.73784 -16.81807 -16.31566 -15.95986 -15.80137 -14.98546 -14.72069 -14.67208 -14.33174 -14.22220 -13.97126 -13.94381 -13.79985 -13.66274 -13.22335 -12.67259 -12.51794 -12.44588 -11.95641 -11.62024 -11.47750 -11.14523 -11.03004 -10.72100 -10.53390 -9.99891 -9.80973 -9.73317 -9.45658 -8.80863 -8.78033 -6.89079 -5.77493 -3.09425 2.49821 2.70524 3.20813 3.39457 3.44626 3.46430 3.66020 3.84807 3.85225 4.45807 4.50833 4.70771 4.87649 5.14502 5.19699 5.30130 5.34397 5.39617 5.53704 5.58178 5.94855 6.08832 6.29751 6.48009 6.58680 6.61514 6.74206 7.16121 7.28164 7.54458 7.64996 7.97514 8.31959 9.04241 9.70758 10.58745 11.39695 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.003369 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.296392 B = 8309.570418 C = 8867.854858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.148 3.852 13 N -0.719 5.719 14 C 0.515 3.485 15 O -0.544 6.544 16 C -0.147 4.147 17 C -0.150 4.150 18 C 0.452 3.548 19 F -0.185 7.185 20 F -0.184 7.184 21 F -0.183 7.183 22 C 0.165 3.835 23 H 0.253 0.747 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.400 0.600 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.027 0.973 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -13.251 9.409 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.338 5.338 10 C 0.000 4.000 11 C -0.176 4.176 12 C 0.025 3.975 13 N -0.369 5.369 14 C 0.300 3.700 15 O -0.422 6.422 16 C -0.187 4.187 17 C -0.189 4.189 18 C 0.398 3.602 19 F -0.167 7.167 20 F -0.166 7.166 21 F -0.165 7.165 22 C 0.040 3.960 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.234 0.766 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.044 0.956 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.149 -12.716 9.978 18.101 hybrid contribution -0.175 0.807 -0.508 0.969 sum -8.323 -11.909 9.470 17.343 Atomic orbital electron populations 1.69800 1.05009 1.25291 1.56838 1.24752 0.95656 0.97469 1.02472 0.86143 0.78728 0.83529 0.77526 1.21669 1.21635 1.20582 1.19035 0.90298 0.82077 1.43666 0.90292 1.46053 1.02250 0.99258 1.86224 1.22519 0.94116 0.86637 0.96686 1.23453 1.00282 0.99866 0.93988 1.21104 0.82132 1.01721 0.92563 1.45999 1.14299 1.70109 1.06472 1.20149 0.89562 0.77518 0.82741 1.90728 1.45760 1.49333 1.56358 1.21624 0.97419 1.05451 0.94233 1.22605 0.91159 1.08056 0.97033 1.20634 0.89405 0.74423 0.75708 1.93178 1.93547 1.40714 1.89239 1.93192 1.96957 1.96232 1.30180 1.93197 1.69155 1.65934 1.88191 1.22354 0.88363 0.88582 0.96716 0.93707 0.93641 0.94533 0.91515 0.92194 0.89871 0.76578 0.87419 0.87686 0.86468 0.86316 0.95565 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 11.39 55.49 0.63 -26.42 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.24 3.59 -177.70 -0.64 -15.88 16 10 C 0.13 2.47 8.51 -2.96 -0.03 2.45 16 11 C -0.16 -2.66 3.99 -89.70 -0.36 -3.01 16 12 C 0.15 2.47 5.42 -4.04 -0.02 2.45 16 13 N -0.72 -9.63 5.56 -60.29 -0.33 -9.96 16 14 C 0.52 6.95 7.83 -10.98 -0.09 6.87 16 15 O -0.54 -9.54 15.98 5.56 0.09 -9.45 16 16 C -0.15 -1.33 5.46 -27.88 -0.15 -1.48 16 17 C -0.15 -1.34 4.55 -26.73 -0.12 -1.46 16 18 C 0.45 4.14 3.16 37.16 0.12 4.26 16 19 F -0.19 -1.73 16.80 2.25 0.04 -1.69 16 20 F -0.18 -1.85 17.32 2.25 0.04 -1.81 16 21 F -0.18 -1.84 16.80 2.25 0.04 -1.80 16 22 C 0.17 3.66 7.03 -2.85 -0.02 3.64 16 23 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.76 7.98 -51.93 -0.41 1.35 16 29 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 30 H 0.11 0.86 7.80 -51.93 -0.41 0.46 16 31 H 0.10 0.72 7.80 -51.93 -0.41 0.31 16 32 H 0.12 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.12 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -32.63 312.62 -5.81 -38.45 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.44 Total: -0.36 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.92 Total: 7.03 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.34 Total: -52.26 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.31 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.63 -5.81 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665267862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.358 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds