Wall clock time and date at job start Tue Mar 31 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48501 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47258 * 300.00359 * 3 2 1 6 6 H 1.48507 * 109.47289 * 60.00213 * 3 2 1 7 7 C 1.38811 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00475 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99805 * 173.94315 * 9 7 2 11 11 C 1.53003 * 112.85034 * 294.81152 * 10 9 7 12 12 N 1.46493 * 109.47211 * 294.03528 * 11 10 9 13 13 C 1.34778 * 119.99822 * 178.07702 * 12 11 10 14 14 O 1.21278 * 120.00042 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.46797 * 180.02562 * 15 13 12 17 17 F 1.39898 * 109.47449 * 60.00501 * 16 15 13 18 18 F 1.39907 * 109.46633 * 180.02562 * 16 15 13 19 19 F 1.39895 * 109.47610 * 299.99898 * 16 15 13 20 20 C 1.53778 * 113.61852 * 66.01435 * 10 9 7 21 21 C 1.53956 * 87.02140 * 89.22431 * 20 10 9 22 22 C 1.53778 * 87.11097 * 25.36478 * 21 20 10 23 23 H 0.96999 * 120.00001 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99865 * 353.94314 * 9 7 2 25 25 H 1.09005 * 109.46683 * 174.03426 * 11 10 9 26 26 H 1.09006 * 109.46807 * 54.03855 * 11 10 9 27 27 H 0.97001 * 120.00306 * 358.36422 * 12 11 10 28 28 H 1.08991 * 109.46885 * 300.00510 * 15 13 12 29 29 H 1.08999 * 109.46825 * 60.00636 * 15 13 12 30 30 H 1.08990 * 113.61756 * 203.74980 * 20 10 9 31 31 H 1.09006 * 113.60864 * 334.64773 * 20 10 9 32 32 H 1.09005 * 113.53902 * 270.81492 * 21 20 10 33 33 H 1.08996 * 113.66400 * 139.93507 * 21 20 10 34 34 H 1.08996 * 113.61586 * 220.08986 * 22 21 20 35 35 H 1.08998 * 113.61657 * 89.18561 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6532 -0.1350 11 6 2.7400 -3.8018 -1.4934 12 7 1.7262 -3.8912 -2.5472 13 6 2.1024 -3.9883 -3.8377 14 8 3.2802 -4.0022 -4.1266 15 6 1.0596 -4.0809 -4.9217 16 6 1.7480 -4.1818 -6.2843 17 9 2.5555 -5.3238 -6.3155 18 9 0.7799 -4.2671 -7.2907 19 9 2.5380 -3.0462 -6.4930 20 6 2.9701 -3.9663 1.0582 21 6 1.7609 -4.6696 1.7011 22 6 1.2263 -4.8841 0.2753 23 1 -0.4850 0.8400 0.0004 24 1 0.3597 -2.3905 0.0885 25 1 3.3474 -4.7069 -1.4959 26 1 3.3771 -2.9361 -1.6746 27 1 0.7842 -3.8762 -2.3164 28 1 0.4444 -4.9658 -4.7594 29 1 0.4302 -3.1913 -4.8972 30 1 3.7891 -4.6424 0.8133 31 1 3.2995 -3.0796 1.6000 32 1 1.1414 -4.0060 2.3045 33 1 2.0163 -5.5960 2.2156 34 1 0.1499 -4.7374 0.1859 35 1 1.5676 -5.8117 -0.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673146902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:36 Heat of formation + Delta-G solvation = -164.472973 kcal Electronic energy + Delta-G solvation = -22610.686841 eV Core-core repulsion = 18615.509191 eV Total energy + Delta-G solvation = -3995.177649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.01769 -47.56848 -47.41925 -39.69179 -38.53278 -34.08579 -33.33142 -31.88155 -30.06519 -27.33369 -25.36600 -24.24747 -23.58899 -21.75965 -20.39446 -18.74607 -18.48238 -18.25615 -17.52881 -17.13056 -16.53214 -15.58850 -15.32679 -14.94674 -14.48100 -14.32939 -14.26740 -14.01119 -13.87824 -13.61731 -13.59364 -13.39565 -13.25618 -13.01790 -12.51920 -12.02603 -11.96710 -11.79719 -11.30873 -11.07241 -10.90533 -10.41954 -10.28334 -10.17682 -9.85135 -9.77479 -9.54372 -8.95922 -8.67703 -7.11633 -5.89431 -3.19467 2.61544 2.71281 3.30644 3.37388 3.45302 3.45970 3.73297 4.07622 4.25244 4.48608 4.87527 4.99997 5.10258 5.10894 5.19395 5.22723 5.36712 5.45377 5.70829 5.94654 6.05616 6.12782 6.25925 6.31027 6.44331 6.62306 6.77124 6.88328 6.96855 7.64834 7.71746 8.29294 8.36060 9.41062 9.93505 10.28713 11.32515 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.005441 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.558201 B = 5145.152784 C = 6298.166898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.173 3.827 11 C 0.120 3.880 12 N -0.696 5.696 13 C 0.513 3.487 14 O -0.535 6.535 15 C -0.197 4.197 16 C 0.473 3.527 17 F -0.175 7.175 18 F -0.187 7.187 19 F -0.172 7.172 20 C -0.151 4.151 21 C -0.129 4.129 22 C -0.145 4.145 23 H 0.255 0.745 24 H 0.386 0.614 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.403 0.597 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -11.579 -6.282 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.006 4.006 12 N -0.345 5.345 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.238 4.238 16 C 0.418 3.582 17 F -0.157 7.157 18 F -0.168 7.168 19 F -0.154 7.154 20 C -0.191 4.191 21 C -0.166 4.166 22 C -0.183 4.183 23 H 0.065 0.935 24 H 0.221 0.779 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.237 0.763 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.292 -11.421 -6.506 13.148 hybrid contribution -0.324 1.086 -0.081 1.136 sum -0.032 -10.335 -6.587 12.256 Atomic orbital electron populations 1.69653 1.05074 1.25716 1.57399 1.24721 0.95480 0.97672 1.02532 0.86167 0.79024 0.84124 0.77187 1.20448 1.21828 1.21847 1.19149 0.91134 0.83579 1.42882 0.91042 1.42074 1.06067 0.99031 1.86842 1.20830 0.93088 0.87498 0.90617 1.21938 0.90492 1.00876 0.87291 1.45624 1.11299 1.72461 1.05100 1.19656 0.89016 0.77871 0.83809 1.90786 1.17900 1.50136 1.82417 1.22973 1.00718 1.09545 0.90551 1.19748 0.77190 0.74390 0.86838 1.93204 1.74643 1.50997 1.96846 1.93185 1.63367 1.96113 1.64138 1.93230 1.75460 1.51021 1.95643 1.23340 0.96372 1.00437 0.98944 1.22662 0.98496 0.99564 0.95879 1.23153 0.99894 0.97775 0.97454 0.93500 0.77913 0.92497 0.90987 0.76253 0.84754 0.84335 0.91261 0.90645 0.90015 0.92675 0.91617 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.20 13.07 55.49 0.73 -25.48 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.02 9.06 -15.06 -0.14 -6.15 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -15.27 5.18 -46.48 -0.24 -15.51 16 10 C 0.17 2.98 0.79 -131.00 -0.10 2.88 16 11 C 0.12 2.06 5.03 -4.04 -0.02 2.04 16 12 N -0.70 -10.65 5.44 -60.29 -0.33 -10.97 16 13 C 0.51 7.99 7.60 -10.98 -0.08 7.90 16 14 O -0.53 -10.42 14.83 5.56 0.08 -10.33 16 15 C -0.20 -2.19 5.75 -27.88 -0.16 -2.35 16 16 C 0.47 6.21 2.89 37.16 0.11 6.32 16 17 F -0.18 -2.55 16.40 2.25 0.04 -2.51 16 18 F -0.19 -2.22 17.32 2.25 0.04 -2.18 16 19 F -0.17 -2.71 16.40 2.25 0.04 -2.68 16 20 C -0.15 -2.45 7.29 -25.83 -0.19 -2.64 16 21 C -0.13 -1.88 8.00 -25.83 -0.21 -2.09 16 22 C -0.14 -2.04 7.11 -25.92 -0.18 -2.22 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 8.99 7.87 -40.82 -0.32 8.67 16 25 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 26 H 0.07 1.47 7.85 -51.93 -0.41 1.07 16 27 H 0.40 5.51 8.33 -40.82 -0.34 5.17 16 28 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -30.24 311.45 -5.44 -35.68 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.39 Total: 9.14 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.07 Total: 3.40 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.16 Total: -51.96 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.24 -5.44 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673146902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.788 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds