Wall clock time and date at job start Tue Mar 31 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48501 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47258 * 300.00359 * 3 2 1 6 6 H 1.48507 * 109.47289 * 60.00213 * 3 2 1 7 7 C 1.38811 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00475 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99805 * 173.94315 * 9 7 2 11 11 C 1.53003 * 112.85034 * 294.81152 * 10 9 7 12 12 N 1.46493 * 109.47211 * 294.03528 * 11 10 9 13 13 C 1.34778 * 119.99822 * 178.07702 * 12 11 10 14 14 O 1.21278 * 120.00042 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.46797 * 180.02562 * 15 13 12 17 17 F 1.39898 * 109.47449 * 60.00501 * 16 15 13 18 18 F 1.39907 * 109.46633 * 180.02562 * 16 15 13 19 19 F 1.39895 * 109.47610 * 299.99898 * 16 15 13 20 20 C 1.53778 * 113.61852 * 66.01435 * 10 9 7 21 21 C 1.53956 * 87.02140 * 89.22431 * 20 10 9 22 22 C 1.53778 * 87.11097 * 25.36478 * 21 20 10 23 23 H 0.96999 * 120.00001 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99865 * 353.94314 * 9 7 2 25 25 H 1.09005 * 109.46683 * 174.03426 * 11 10 9 26 26 H 1.09006 * 109.46807 * 54.03855 * 11 10 9 27 27 H 0.97001 * 120.00306 * 358.36422 * 12 11 10 28 28 H 1.08991 * 109.46885 * 300.00510 * 15 13 12 29 29 H 1.08999 * 109.46825 * 60.00636 * 15 13 12 30 30 H 1.08990 * 113.61756 * 203.74980 * 20 10 9 31 31 H 1.09006 * 113.60864 * 334.64773 * 20 10 9 32 32 H 1.09005 * 113.53902 * 270.81492 * 21 20 10 33 33 H 1.08996 * 113.66400 * 139.93507 * 21 20 10 34 34 H 1.08996 * 113.61586 * 220.08986 * 22 21 20 35 35 H 1.08998 * 113.61657 * 89.18561 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6532 -0.1350 11 6 2.7400 -3.8018 -1.4934 12 7 1.7262 -3.8912 -2.5472 13 6 2.1024 -3.9883 -3.8377 14 8 3.2802 -4.0022 -4.1266 15 6 1.0596 -4.0809 -4.9217 16 6 1.7480 -4.1818 -6.2843 17 9 2.5555 -5.3238 -6.3155 18 9 0.7799 -4.2671 -7.2907 19 9 2.5380 -3.0462 -6.4930 20 6 2.9701 -3.9663 1.0582 21 6 1.7609 -4.6696 1.7011 22 6 1.2263 -4.8841 0.2753 23 1 -0.4850 0.8400 0.0004 24 1 0.3597 -2.3905 0.0885 25 1 3.3474 -4.7069 -1.4959 26 1 3.3771 -2.9361 -1.6746 27 1 0.7842 -3.8762 -2.3164 28 1 0.4444 -4.9658 -4.7594 29 1 0.4302 -3.1913 -4.8972 30 1 3.7891 -4.6424 0.8133 31 1 3.2995 -3.0796 1.6000 32 1 1.1414 -4.0060 2.3045 33 1 2.0163 -5.5960 2.2156 34 1 0.1499 -4.7374 0.1859 35 1 1.5676 -5.8117 -0.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673146902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:35 Heat of formation + Delta-G solvation = -185.201156 kcal Electronic energy + Delta-G solvation = -22611.585682 eV Core-core repulsion = 18615.509191 eV Total energy + Delta-G solvation = -3996.076491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.06879 -48.58833 -48.53517 -40.99635 -39.85847 -35.39927 -35.19894 -32.92467 -31.86235 -28.71101 -26.70532 -25.82146 -24.91191 -23.05154 -21.62895 -19.90848 -19.56599 -19.53675 -19.12866 -18.55764 -17.71292 -16.96113 -16.56269 -16.37339 -15.90744 -15.63244 -15.42039 -15.33540 -15.08318 -14.95448 -14.71798 -14.68555 -14.59365 -14.29226 -13.90527 -13.27439 -13.05244 -12.98429 -12.96494 -12.91911 -12.53512 -12.14192 -11.93564 -11.59835 -11.47530 -11.19795 -10.89189 -10.74683 -10.01683 -8.97617 -7.94463 -5.20369 1.43438 1.47169 1.50079 1.53574 1.61006 2.18519 2.54336 2.74085 3.08447 3.18816 3.38681 3.76188 3.79074 3.84546 4.01549 4.10867 4.18228 4.23984 4.29346 4.65485 4.85063 4.91762 4.94615 5.03242 5.15887 5.31639 5.43653 5.48116 5.63611 5.72388 6.30725 6.50521 7.16520 7.37472 8.11096 8.34947 9.27886 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.005441 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.558201 B = 5145.152784 C = 6298.166898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.220 4.220 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.158 3.842 11 C 0.128 3.872 12 N -0.691 5.691 13 C 0.507 3.493 14 O -0.579 6.579 15 C -0.184 4.184 16 C 0.469 3.531 17 F -0.185 7.185 18 F -0.178 7.178 19 F -0.193 7.193 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.125 4.125 23 H 0.249 0.751 24 H 0.379 0.621 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.413 0.587 28 H 0.179 0.821 29 H 0.160 0.840 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -13.464 -6.389 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.352 4.352 8 H 0.082 0.918 9 N -0.343 5.343 10 C 0.067 3.933 11 C 0.002 3.998 12 N -0.341 5.341 13 C 0.293 3.707 14 O -0.460 6.460 15 C -0.224 4.224 16 C 0.415 3.585 17 F -0.167 7.167 18 F -0.159 7.159 19 F -0.174 7.174 20 C -0.192 4.192 21 C -0.160 4.160 22 C -0.162 4.162 23 H 0.058 0.942 24 H 0.212 0.788 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.249 0.751 28 H 0.197 0.803 29 H 0.178 0.822 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.293 -13.342 -6.607 14.891 hybrid contribution -0.066 1.587 -0.056 1.590 sum -0.359 -11.754 -6.664 13.517 Atomic orbital electron populations 1.69748 1.05881 1.25602 1.59744 1.25251 0.96157 0.99976 1.04243 0.85397 0.78273 0.81549 0.76517 1.20036 1.22547 1.22151 1.19304 0.90927 0.84984 1.39990 0.91793 1.42098 1.05760 0.99764 1.86723 1.21123 0.94269 0.87074 0.90870 1.21721 0.90617 0.99836 0.87629 1.45579 1.11439 1.72118 1.04922 1.20350 0.89338 0.76538 0.84454 1.90771 1.20128 1.52009 1.83074 1.23010 0.99393 1.12725 0.87253 1.20053 0.77040 0.73456 0.88001 1.93184 1.75129 1.51430 1.96957 1.93202 1.62744 1.96004 1.63941 1.93191 1.76231 1.52141 1.95854 1.23381 0.97640 1.00074 0.98146 1.22597 0.97000 1.00128 0.96265 1.23104 0.99760 0.96866 0.96504 0.94177 0.78772 0.90865 0.95059 0.75065 0.80326 0.82220 0.88828 0.93620 0.92119 0.89713 0.91090 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.54 13.07 21.65 0.28 -54.26 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 45.36 29.55 68.60 2.03 47.39 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.22 -11.26 9.06 84.03 0.76 -10.50 16 8 H 0.06 3.33 7.83 -2.91 -0.02 3.31 16 9 N -0.70 -30.47 5.18 -300.96 -1.56 -32.02 16 10 C 0.16 5.22 0.79 4.13 0.00 5.22 16 11 C 0.13 4.26 5.03 86.38 0.43 4.70 16 12 N -0.69 -19.84 5.44 -463.05 -2.52 -22.36 16 13 C 0.51 14.95 7.60 87.66 0.67 15.61 16 14 O -0.58 -22.29 14.83 -3.02 -0.04 -22.33 16 15 C -0.18 -3.54 5.75 29.85 0.17 -3.37 16 16 C 0.47 11.51 2.89 71.98 0.21 11.72 16 17 F -0.19 -5.14 16.40 44.97 0.74 -4.40 16 18 F -0.18 -3.83 17.32 44.97 0.78 -3.06 16 19 F -0.19 -5.98 16.40 44.97 0.74 -5.24 16 20 C -0.15 -4.70 7.29 31.18 0.23 -4.48 16 21 C -0.12 -3.25 8.00 31.18 0.25 -3.00 16 22 C -0.12 -3.09 7.11 31.12 0.22 -2.87 16 23 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 24 H 0.38 17.49 7.87 -92.71 -0.73 16.77 16 25 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 26 H 0.03 1.29 7.85 -2.38 -0.02 1.27 16 27 H 0.41 10.23 8.33 -92.71 -0.77 9.45 16 28 H 0.18 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 31 H 0.04 1.67 7.86 -2.38 -0.02 1.65 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 35 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -66.83 311.45 3.48 -63.34 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.37 Total: 22.89 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 3.41 Total: 10.06 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -3.80 Total: -108.64 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.25 Total: -12.70 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.83 3.48 -63.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673146902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.859 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds