Wall clock time and date at job start Tue Mar 31 2020 01:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47067 * 270.00571 * 3 2 1 5 5 H 1.48502 * 109.46777 * 30.00409 * 3 2 1 6 6 H 1.48501 * 109.46797 * 150.00276 * 3 2 1 7 7 C 1.38813 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 359.72653 * 7 2 1 9 9 N 1.36934 * 119.99598 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99787 * 174.46389 * 9 7 2 11 11 C 1.52997 * 115.55353 * 65.27099 * 10 9 7 12 12 N 1.46500 * 109.47352 * 80.39056 * 11 10 9 13 13 C 1.34773 * 120.00032 * 174.94571 * 12 11 10 14 14 O 1.21282 * 120.00281 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99557 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46545 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46830 * 179.97438 * 16 15 13 18 18 F 1.39898 * 109.47118 * 60.00160 * 17 16 15 19 19 F 1.39907 * 109.47139 * 179.97438 * 17 16 15 20 20 F 1.39902 * 109.47244 * 300.00117 * 17 16 15 21 21 C 1.53005 * 117.49520 * 279.60174 * 10 9 7 22 22 C 1.53006 * 117.49707 * 210.94290 * 10 9 7 23 23 H 0.97006 * 119.99508 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00269 * 354.45304 * 9 7 2 25 25 H 1.08997 * 109.47126 * 200.39471 * 11 10 9 26 26 H 1.09003 * 109.47087 * 320.38939 * 11 10 9 27 27 H 0.96999 * 119.99437 * 354.95187 * 12 11 10 28 28 H 1.09002 * 109.47344 * 299.99481 * 15 13 12 29 29 H 1.08992 * 109.47214 * 60.00524 * 15 13 12 30 30 H 1.08994 * 109.47274 * 299.99838 * 16 15 13 31 31 H 1.09002 * 109.47114 * 60.00201 * 16 15 13 32 32 H 1.09001 * 117.49522 * 359.97438 * 21 10 9 33 33 H 1.08993 * 117.49788 * 145.02437 * 21 10 9 34 34 H 1.08997 * 117.49528 * 214.97659 * 22 10 9 35 35 H 1.09000 * 117.50017 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 0.0035 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4650 0.1208 11 6 3.9416 -3.4419 -1.0443 12 7 4.8181 -3.0431 -2.1484 13 6 4.9129 -3.8178 -3.2471 14 8 4.2724 -4.8450 -3.3220 15 6 5.8150 -3.4078 -4.3825 16 6 5.7385 -4.4528 -5.4974 17 6 6.6538 -4.0362 -6.6505 18 9 7.9713 -3.9418 -6.1894 19 9 6.5844 -4.9920 -7.6698 20 9 6.2433 -2.7941 -7.1465 21 6 4.2698 -3.0578 1.5225 22 6 5.4737 -2.4274 0.8177 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3660 -0.0823 25 1 4.2047 -4.4476 -0.7166 26 1 2.9048 -3.4290 -1.3805 27 1 5.3302 -2.2215 -2.0885 28 1 5.4952 -2.4402 -4.7694 29 1 6.8413 -3.3342 -4.0228 30 1 6.0580 -5.4205 -5.1109 31 1 4.7121 -4.5259 -5.8570 32 1 3.8289 -2.5079 2.3539 33 1 4.2525 -4.1436 1.6145 34 1 6.2478 -3.0990 0.4464 35 1 5.8246 -1.4631 1.1852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699649893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:40 Heat of formation + Delta-G solvation = -162.571499 kcal Electronic energy + Delta-G solvation = -21784.127391 eV Core-core repulsion = 17789.032195 eV Total energy + Delta-G solvation = -3995.095195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.32564 -47.82284 -47.80087 -39.70860 -37.75878 -33.99964 -33.86489 -33.07314 -30.41974 -28.19252 -25.84765 -23.66154 -22.79285 -21.99096 -20.27191 -19.28381 -18.78803 -18.58207 -17.79703 -17.69557 -16.51763 -16.01058 -15.74443 -15.19514 -14.70334 -14.63349 -14.30344 -14.23516 -14.12674 -13.96647 -13.94471 -13.63059 -13.35214 -12.78450 -12.61255 -12.37741 -12.24594 -11.95659 -11.59949 -11.29890 -11.12677 -11.04780 -10.60894 -10.20490 -9.92943 -9.69368 -9.46020 -8.96966 -8.78616 -7.43269 -5.87009 -3.25938 2.48927 2.69896 3.18117 3.28453 3.30113 3.37537 3.64538 3.82295 3.84088 4.31677 4.48273 4.50778 4.69941 4.89632 4.90494 5.08374 5.18373 5.33482 5.38988 5.45689 5.52855 5.65553 5.92245 6.08333 6.24429 6.32752 6.52807 6.61427 6.67087 7.65894 7.88670 8.31029 8.31910 9.07781 9.79204 9.96862 11.30581 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.003860 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.534887 B = 7251.397777 C = 7832.956521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.093 0.907 9 N -0.714 5.714 10 C 0.131 3.869 11 C 0.147 3.853 12 N -0.710 5.710 13 C 0.514 3.486 14 O -0.547 6.547 15 C -0.148 4.148 16 C -0.149 4.149 17 C 0.452 3.548 18 F -0.185 7.185 19 F -0.184 7.184 20 F -0.183 7.183 21 C -0.180 4.180 22 C -0.188 4.188 23 H 0.261 0.739 24 H 0.365 0.635 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.401 0.599 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.430 -6.975 -8.968 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.355 5.355 10 C 0.038 3.962 11 C 0.022 3.978 12 N -0.360 5.360 13 C 0.300 3.700 14 O -0.425 6.425 15 C -0.188 4.188 16 C -0.188 4.188 17 C 0.398 3.602 18 F -0.167 7.167 19 F -0.166 7.166 20 F -0.165 7.165 21 C -0.220 4.220 22 C -0.226 4.226 23 H 0.071 0.929 24 H 0.199 0.801 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.235 0.765 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.690 -7.722 -9.022 19.678 hybrid contribution 0.892 1.838 -0.112 2.046 sum 16.582 -5.884 -9.134 19.825 Atomic orbital electron populations 1.69698 1.05112 1.25975 1.56670 1.24678 0.95195 0.97145 1.01597 0.86598 0.79284 0.85120 0.77786 1.21020 1.21624 1.20286 1.18982 0.80006 0.94844 1.43775 0.88935 1.42107 1.03820 1.01078 1.88498 1.20075 0.94662 0.90195 0.91312 1.21272 0.95109 0.96099 0.85339 1.45902 1.46556 1.25843 1.17688 1.20154 0.82614 0.84045 0.83208 1.90718 1.46170 1.25157 1.80503 1.21622 1.02100 1.00497 0.94550 1.22600 1.01405 1.02320 0.92454 1.20644 0.80262 0.74870 0.84423 1.93180 1.38884 1.96043 1.88575 1.93193 1.96289 1.64258 1.62819 1.93198 1.90127 1.43966 1.89186 1.23359 1.01147 0.99524 0.98011 1.23137 0.91333 1.02553 1.05587 0.92883 0.80150 0.91706 0.90008 0.76514 0.87482 0.87716 0.86470 0.86321 0.88385 0.89514 0.89151 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.97 55.49 0.78 -27.51 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.00 27.68 -169.99 -4.71 16.30 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.15 6.60 56.52 0.37 -5.78 16 7 C -0.25 -6.57 10.05 -15.06 -0.15 -6.72 16 8 H 0.09 2.69 7.99 -52.49 -0.42 2.27 16 9 N -0.71 -15.45 5.29 -47.23 -0.25 -15.70 16 10 C 0.13 2.28 2.15 -131.81 -0.28 1.99 16 11 C 0.15 2.45 5.73 -4.04 -0.02 2.43 16 12 N -0.71 -9.79 5.51 -60.30 -0.33 -10.12 16 13 C 0.51 6.93 7.83 -10.99 -0.09 6.85 16 14 O -0.55 -9.35 15.98 5.56 0.09 -9.26 16 15 C -0.15 -1.36 5.46 -27.88 -0.15 -1.51 16 16 C -0.15 -1.33 4.55 -26.73 -0.12 -1.45 16 17 C 0.45 4.17 3.16 37.16 0.12 4.28 16 18 F -0.19 -1.76 16.80 2.25 0.04 -1.72 16 19 F -0.18 -1.85 17.32 2.25 0.04 -1.81 16 20 F -0.18 -1.86 16.80 2.25 0.04 -1.82 16 21 C -0.18 -2.87 10.11 -26.69 -0.27 -3.14 16 22 C -0.19 -2.62 10.14 -26.69 -0.27 -2.89 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 24 H 0.36 7.71 5.96 -40.82 -0.24 7.47 16 25 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 26 H 0.08 1.65 7.72 -51.93 -0.40 1.25 16 27 H 0.40 4.74 8.48 -40.82 -0.35 4.39 16 28 H 0.11 0.90 7.80 -51.93 -0.41 0.50 16 29 H 0.10 0.75 7.80 -51.93 -0.41 0.35 16 30 H 0.12 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.12 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -31.52 315.53 -5.21 -36.74 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.32 Total: 10.14 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.34 Total: 0.03 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.19 Total: -53.34 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.11 Total: -5.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.52 -5.21 -36.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.834 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds