Wall clock time and date at job start Tue Mar 31 2020 01:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47067 * 270.00571 * 3 2 1 5 5 H 1.48502 * 109.46777 * 30.00409 * 3 2 1 6 6 H 1.48501 * 109.46797 * 150.00276 * 3 2 1 7 7 C 1.38813 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 359.72653 * 7 2 1 9 9 N 1.36934 * 119.99598 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99787 * 174.46389 * 9 7 2 11 11 C 1.52997 * 115.55353 * 65.27099 * 10 9 7 12 12 N 1.46500 * 109.47352 * 80.39056 * 11 10 9 13 13 C 1.34773 * 120.00032 * 174.94571 * 12 11 10 14 14 O 1.21282 * 120.00281 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99557 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46545 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46830 * 179.97438 * 16 15 13 18 18 F 1.39898 * 109.47118 * 60.00160 * 17 16 15 19 19 F 1.39907 * 109.47139 * 179.97438 * 17 16 15 20 20 F 1.39902 * 109.47244 * 300.00117 * 17 16 15 21 21 C 1.53005 * 117.49520 * 279.60174 * 10 9 7 22 22 C 1.53006 * 117.49707 * 210.94290 * 10 9 7 23 23 H 0.97006 * 119.99508 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00269 * 354.45304 * 9 7 2 25 25 H 1.08997 * 109.47126 * 200.39471 * 11 10 9 26 26 H 1.09003 * 109.47087 * 320.38939 * 11 10 9 27 27 H 0.96999 * 119.99437 * 354.95187 * 12 11 10 28 28 H 1.09002 * 109.47344 * 299.99481 * 15 13 12 29 29 H 1.08992 * 109.47214 * 60.00524 * 15 13 12 30 30 H 1.08994 * 109.47274 * 299.99838 * 16 15 13 31 31 H 1.09002 * 109.47114 * 60.00201 * 16 15 13 32 32 H 1.09001 * 117.49522 * 359.97438 * 21 10 9 33 33 H 1.08993 * 117.49788 * 145.02437 * 21 10 9 34 34 H 1.08997 * 117.49528 * 214.97659 * 22 10 9 35 35 H 1.09000 * 117.50017 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 0.0035 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4650 0.1208 11 6 3.9416 -3.4419 -1.0443 12 7 4.8181 -3.0431 -2.1484 13 6 4.9129 -3.8178 -3.2471 14 8 4.2724 -4.8450 -3.3220 15 6 5.8150 -3.4078 -4.3825 16 6 5.7385 -4.4528 -5.4974 17 6 6.6538 -4.0362 -6.6505 18 9 7.9713 -3.9418 -6.1894 19 9 6.5844 -4.9920 -7.6698 20 9 6.2433 -2.7941 -7.1465 21 6 4.2698 -3.0578 1.5225 22 6 5.4737 -2.4274 0.8177 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3660 -0.0823 25 1 4.2047 -4.4476 -0.7166 26 1 2.9048 -3.4290 -1.3805 27 1 5.3302 -2.2215 -2.0885 28 1 5.4952 -2.4402 -4.7694 29 1 6.8413 -3.3342 -4.0228 30 1 6.0580 -5.4205 -5.1109 31 1 4.7121 -4.5259 -5.8570 32 1 3.8289 -2.5079 2.3539 33 1 4.2525 -4.1436 1.6145 34 1 6.2478 -3.0990 0.4464 35 1 5.8246 -1.4631 1.1852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699649893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:39 Heat of formation + Delta-G solvation = -184.868234 kcal Electronic energy + Delta-G solvation = -21785.094250 eV Core-core repulsion = 17789.032195 eV Total energy + Delta-G solvation = -3996.062054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.07809 -48.58482 -48.55057 -40.85957 -39.11636 -35.35897 -34.82397 -34.70940 -32.35672 -29.22171 -26.91620 -25.62596 -23.65695 -23.15887 -21.36575 -20.66149 -19.73045 -19.53147 -19.44593 -18.57730 -17.64944 -17.13413 -16.81187 -16.45365 -16.19904 -15.51298 -15.49449 -15.36674 -15.00024 -14.76330 -14.73677 -14.71881 -14.60645 -14.47142 -14.10008 -13.53100 -13.30752 -13.06691 -12.86822 -12.73216 -12.35689 -12.35255 -12.25971 -11.81500 -11.66546 -11.15137 -10.99059 -10.63461 -10.03135 -9.32808 -8.01679 -5.37715 1.38250 1.42398 1.49856 1.62756 1.71526 2.19401 2.48726 2.85925 2.98651 3.11187 3.11411 3.27980 3.42839 3.69458 3.80684 4.00343 4.03575 4.17008 4.27368 4.45776 4.68031 4.76384 4.81895 4.83612 4.85811 5.04949 5.17545 5.37088 5.47679 5.80124 6.21666 6.59442 7.07782 7.25767 7.81596 8.00964 9.19792 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.003860 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.534887 B = 7251.397777 C = 7832.956521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.224 4.224 8 H 0.051 0.949 9 N -0.715 5.715 10 C 0.099 3.901 11 C 0.160 3.840 12 N -0.705 5.705 13 C 0.512 3.488 14 O -0.588 6.588 15 C -0.137 4.137 16 C -0.146 4.146 17 C 0.460 3.540 18 F -0.184 7.184 19 F -0.189 7.189 20 F -0.188 7.188 21 C -0.188 4.188 22 C -0.143 4.143 23 H 0.257 0.743 24 H 0.371 0.629 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.414 0.586 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.989 -6.385 -9.104 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.355 4.355 8 H 0.069 0.931 9 N -0.357 5.357 10 C 0.007 3.993 11 C 0.033 3.967 12 N -0.355 5.355 13 C 0.300 3.700 14 O -0.469 6.469 15 C -0.177 4.177 16 C -0.185 4.185 17 C 0.406 3.594 18 F -0.165 7.165 19 F -0.171 7.171 20 F -0.170 7.170 21 C -0.229 4.229 22 C -0.181 4.181 23 H 0.066 0.934 24 H 0.205 0.795 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.250 0.750 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.337 -7.149 -9.158 22.559 hybrid contribution -0.217 1.503 -0.073 1.520 sum 19.120 -5.646 -9.231 21.969 Atomic orbital electron populations 1.69904 1.07391 1.26657 1.59598 1.25526 0.96022 1.01351 1.02562 0.85391 0.78777 0.79365 0.78074 1.20351 1.22908 1.17000 1.18856 0.82375 0.93114 1.41113 0.93069 1.41958 1.01985 1.03108 1.88632 1.20296 0.97779 0.89080 0.92158 1.20900 0.93157 0.96629 0.85970 1.45824 1.46036 1.26457 1.17220 1.20874 0.82320 0.83168 0.83658 1.90706 1.47906 1.27021 1.81244 1.21621 1.02547 1.00801 0.92734 1.22560 1.01046 1.02598 0.92282 1.20560 0.80211 0.74483 0.84184 1.93184 1.38827 1.96015 1.88508 1.93185 1.96317 1.64488 1.63105 1.93192 1.90191 1.44296 1.89285 1.23388 1.02750 1.00594 0.96130 1.23241 0.89984 1.03199 1.01657 0.93430 0.79489 0.90718 0.94842 0.75016 0.86199 0.84727 0.85964 0.86996 0.90240 0.87763 0.85844 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.45 13.97 21.65 0.30 -62.15 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.96 43.34 27.68 68.60 1.90 45.24 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.25 -9.74 6.60 99.48 0.66 -9.08 16 7 C -0.22 -12.20 10.05 84.03 0.84 -11.36 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 9 N -0.71 -30.22 5.29 -303.33 -1.60 -31.82 16 10 C 0.10 3.27 2.15 3.61 0.01 3.27 16 11 C 0.16 5.24 5.73 86.38 0.49 5.73 16 12 N -0.70 -18.06 5.51 -463.07 -2.55 -20.62 16 13 C 0.51 12.96 7.83 87.66 0.69 13.65 16 14 O -0.59 -19.86 15.98 -3.04 -0.05 -19.91 16 15 C -0.14 -2.15 5.46 29.85 0.16 -1.98 16 16 C -0.15 -2.33 4.55 30.60 0.14 -2.20 16 17 C 0.46 7.51 3.16 71.98 0.23 7.73 16 18 F -0.18 -2.99 16.80 44.97 0.76 -2.23 16 19 F -0.19 -3.52 17.32 44.97 0.78 -2.74 16 20 F -0.19 -3.44 16.80 44.97 0.76 -2.68 16 21 C -0.19 -5.63 10.11 30.62 0.31 -5.32 16 22 C -0.14 -3.39 10.14 30.62 0.31 -3.08 16 23 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 24 H 0.37 14.69 5.96 -92.71 -0.55 14.14 16 25 H 0.07 2.29 7.94 -2.39 -0.02 2.27 16 26 H 0.03 1.41 7.72 -2.39 -0.02 1.39 16 27 H 0.41 8.46 8.48 -92.71 -0.79 7.67 16 28 H 0.12 1.64 7.80 -2.39 -0.02 1.62 16 29 H 0.13 1.35 7.80 -2.39 -0.02 1.33 16 30 H 0.12 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.10 2.72 8.08 -2.39 -0.02 2.71 16 34 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.43 315.53 3.68 -67.75 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.25 Total: 25.86 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 3.65 Total: 3.30 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -3.85 Total: -114.58 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 2.29 Total: -7.65 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Total: -71.43 3.68 -67.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.121 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds