Wall clock time and date at job start Tue Mar 31 2020 01:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47309 * 270.00066 * 3 2 1 5 5 H 1.48493 * 109.47499 * 30.00203 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00533 * 3 2 1 7 7 C 1.38809 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99558 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00312 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99852 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46733 * 175.02243 * 10 9 7 12 12 H 1.09000 * 109.87348 * 304.44317 * 11 10 9 13 13 C 1.54316 * 109.88618 * 65.46429 * 11 10 9 14 14 C 1.55162 * 102.94317 * 141.61126 * 13 11 10 15 15 C 1.54914 * 101.57842 * 324.49739 * 14 13 11 16 16 N 1.47027 * 109.88073 * 183.43265 * 11 10 9 17 17 C 1.34780 * 125.64494 * 61.60535 * 16 11 10 18 18 O 1.21278 * 120.00308 * 5.08559 * 17 16 11 19 19 C 1.50697 * 119.99616 * 185.08345 * 17 16 11 20 20 C 1.53006 * 109.47100 * 180.02562 * 19 17 16 21 21 F 1.39900 * 109.47119 * 60.00052 * 20 19 17 22 22 F 1.39901 * 109.47298 * 180.02562 * 20 19 17 23 23 F 1.39902 * 109.47197 * 300.00326 * 20 19 17 24 24 H 0.96995 * 120.00731 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47446 * 295.01858 * 10 9 7 27 27 H 1.08993 * 109.47022 * 55.01872 * 10 9 7 28 28 H 1.09001 * 110.72092 * 259.97161 * 13 11 10 29 29 H 1.09001 * 110.72074 * 23.24546 * 13 11 10 30 30 H 1.08994 * 111.00330 * 82.56930 * 14 13 11 31 31 H 1.09001 * 111.00052 * 206.38900 * 14 13 11 32 32 H 1.09002 * 110.36507 * 155.85220 * 15 14 13 33 33 H 1.09007 * 110.36764 * 278.06141 * 15 14 13 34 34 H 1.08996 * 109.47572 * 299.99664 * 19 17 16 35 35 H 1.08994 * 109.47160 * 60.00440 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6116 -2.1939 -0.1269 12 1 5.8043 -1.5940 -1.0163 13 6 6.1149 -1.4493 1.1275 14 6 7.5103 -2.0826 1.3712 15 6 7.2632 -3.5519 0.9469 16 7 6.3492 -3.4630 -0.2103 17 6 6.2116 -4.3891 -1.1799 18 8 5.4941 -4.1681 -2.1323 19 6 6.9495 -5.6993 -1.0805 20 6 6.6220 -6.5630 -2.3002 21 9 7.0146 -5.8938 -3.4644 22 9 7.3066 -7.7795 -2.2077 23 9 5.2449 -6.8055 -2.3437 24 1 -0.4851 0.8399 0.0004 25 1 3.8646 -0.3620 -0.0014 26 1 3.9178 -3.0026 0.9303 27 1 3.7832 -3.0802 -0.8428 28 1 6.2054 -0.3808 0.9315 29 1 5.4549 -1.6323 1.9755 30 1 8.2667 -1.6158 0.7404 31 1 7.7891 -2.0207 2.4231 32 1 8.2004 -4.0246 0.6531 33 1 6.7971 -4.1084 1.7602 34 1 8.0225 -5.5104 -1.0471 35 1 6.6440 -6.2205 -0.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:36 Heat of formation + Delta-G solvation = -171.141276 kcal Electronic energy + Delta-G solvation = -22660.503571 eV Core-core repulsion = 18665.036762 eV Total energy + Delta-G solvation = -3995.466809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.16575 -47.71998 -47.55832 -40.29470 -37.69488 -34.76197 -32.63632 -31.52830 -31.15708 -29.16523 -25.45149 -24.60306 -22.83815 -22.00496 -20.84471 -19.46932 -18.70784 -18.62977 -17.55566 -17.46709 -16.86008 -16.41751 -15.32881 -14.75810 -14.52424 -14.41877 -14.29563 -14.04418 -14.00799 -13.75751 -13.74798 -13.66986 -13.13540 -13.06442 -12.83027 -12.67323 -12.42390 -12.15409 -11.78351 -11.39749 -11.22505 -10.94366 -10.74962 -10.54564 -10.17887 -10.03870 -9.57447 -8.87957 -8.70930 -7.22370 -5.74074 -3.10238 2.31154 2.40858 2.84828 3.35989 3.40608 3.45749 3.54250 3.80124 3.87005 4.35273 4.38427 4.60459 4.66945 4.75402 4.79532 4.84225 5.15814 5.19233 5.34247 5.52557 5.57646 5.65940 5.72956 5.83338 5.89491 6.16761 6.26603 6.65098 6.81285 7.33971 7.93139 8.02777 8.44023 9.22502 9.94196 10.13600 11.44456 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.004684 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.538560 B = 5976.954061 C = 6815.090426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.150 3.850 11 C 0.127 3.873 12 H 0.079 0.921 13 C -0.126 4.126 14 C -0.133 4.133 15 C 0.096 3.904 16 N -0.608 5.608 17 C 0.529 3.471 18 O -0.507 6.507 19 C -0.191 4.191 20 C 0.472 3.528 21 F -0.173 7.173 22 F -0.185 7.185 23 F -0.170 7.170 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.863 -11.215 2.805 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.022 3.978 11 C 0.024 3.976 12 H 0.097 0.903 13 C -0.164 4.164 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.343 5.343 17 C 0.315 3.685 18 O -0.381 6.381 19 C -0.232 4.232 20 C 0.417 3.583 21 F -0.155 7.155 22 F -0.167 7.167 23 F -0.151 7.151 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.206 -11.265 2.181 24.111 hybrid contribution 0.541 1.032 -0.069 1.168 sum 21.747 -10.232 2.112 24.127 Atomic orbital electron populations 1.69696 1.05093 1.25787 1.57646 1.24654 0.95227 0.97131 1.02075 0.86546 0.79116 0.85023 0.77820 1.21037 1.21695 1.20376 1.19042 0.80391 0.94818 1.42884 0.89235 1.42532 1.04063 1.01765 1.91327 1.20920 0.87618 0.89948 0.99323 1.21902 0.93322 0.83478 0.98864 0.90256 1.22734 0.95743 1.00090 0.97832 1.22783 0.97968 0.94181 1.02157 1.22475 0.93102 0.98575 0.88533 1.48435 1.41451 1.20037 1.24408 1.19315 0.82653 0.84045 0.82472 1.90891 1.38303 1.78225 1.30656 1.22955 1.05754 0.95954 0.98528 1.19718 0.75106 0.78553 0.84912 1.93226 1.90583 1.80017 1.51643 1.93189 1.79964 1.47141 1.96376 1.93255 1.30635 1.94505 1.96712 0.93050 0.80733 0.95798 0.93730 0.89931 0.89505 0.90626 0.89642 0.90654 0.90716 0.84754 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 N -0.75 -18.27 5.24 -59.91 -0.31 -18.58 16 10 C 0.15 3.06 5.64 -4.04 -0.02 3.04 16 11 C 0.13 1.97 2.94 -66.95 -0.20 1.77 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.13 -1.55 6.00 -24.90 -0.15 -1.70 16 14 C -0.13 -1.07 7.09 -24.58 -0.17 -1.25 16 15 C 0.10 0.75 6.67 -2.35 -0.02 0.74 16 16 N -0.61 -7.61 3.08 -162.76 -0.50 -8.11 16 17 C 0.53 7.26 7.35 -10.98 -0.08 7.18 16 18 O -0.51 -9.54 14.02 5.56 0.08 -9.46 16 19 C -0.19 -1.66 4.86 -27.88 -0.14 -1.79 16 20 C 0.47 5.44 2.89 37.16 0.11 5.55 16 21 F -0.17 -2.36 16.40 2.25 0.04 -2.32 16 22 F -0.19 -1.88 17.32 2.25 0.04 -1.84 16 23 F -0.17 -2.45 16.40 2.25 0.04 -2.41 16 24 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 25 H 0.36 8.34 5.25 -40.82 -0.21 8.12 16 26 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 27 H 0.04 1.04 6.92 -51.93 -0.36 0.68 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.15 7.80 -51.93 -0.40 0.74 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.37 7.53 -51.93 -0.39 -0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.13 0.69 7.78 -51.93 -0.40 0.29 16 35 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -35.80 302.86 -5.24 -41.04 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.32 Total: 2.39 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.92 Total: 6.37 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.04 Total: -55.83 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.80 -5.24 -41.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.099 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds