Wall clock time and date at job start Tue Mar 31 2020 01:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47309 * 270.00066 * 3 2 1 5 5 H 1.48493 * 109.47499 * 30.00203 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00533 * 3 2 1 7 7 C 1.38809 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99558 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00312 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99852 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46733 * 175.02243 * 10 9 7 12 12 H 1.09000 * 109.87348 * 304.44317 * 11 10 9 13 13 C 1.54316 * 109.88618 * 65.46429 * 11 10 9 14 14 C 1.55162 * 102.94317 * 141.61126 * 13 11 10 15 15 C 1.54914 * 101.57842 * 324.49739 * 14 13 11 16 16 N 1.47027 * 109.88073 * 183.43265 * 11 10 9 17 17 C 1.34780 * 125.64494 * 61.60535 * 16 11 10 18 18 O 1.21278 * 120.00308 * 5.08559 * 17 16 11 19 19 C 1.50697 * 119.99616 * 185.08345 * 17 16 11 20 20 C 1.53006 * 109.47100 * 180.02562 * 19 17 16 21 21 F 1.39900 * 109.47119 * 60.00052 * 20 19 17 22 22 F 1.39901 * 109.47298 * 180.02562 * 20 19 17 23 23 F 1.39902 * 109.47197 * 300.00326 * 20 19 17 24 24 H 0.96995 * 120.00731 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47446 * 295.01858 * 10 9 7 27 27 H 1.08993 * 109.47022 * 55.01872 * 10 9 7 28 28 H 1.09001 * 110.72092 * 259.97161 * 13 11 10 29 29 H 1.09001 * 110.72074 * 23.24546 * 13 11 10 30 30 H 1.08994 * 111.00330 * 82.56930 * 14 13 11 31 31 H 1.09001 * 111.00052 * 206.38900 * 14 13 11 32 32 H 1.09002 * 110.36507 * 155.85220 * 15 14 13 33 33 H 1.09007 * 110.36764 * 278.06141 * 15 14 13 34 34 H 1.08996 * 109.47572 * 299.99664 * 19 17 16 35 35 H 1.08994 * 109.47160 * 60.00440 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6116 -2.1939 -0.1269 12 1 5.8043 -1.5940 -1.0163 13 6 6.1149 -1.4493 1.1275 14 6 7.5103 -2.0826 1.3712 15 6 7.2632 -3.5519 0.9469 16 7 6.3492 -3.4630 -0.2103 17 6 6.2116 -4.3891 -1.1799 18 8 5.4941 -4.1681 -2.1323 19 6 6.9495 -5.6993 -1.0805 20 6 6.6220 -6.5630 -2.3002 21 9 7.0146 -5.8938 -3.4644 22 9 7.3066 -7.7795 -2.2077 23 9 5.2449 -6.8055 -2.3437 24 1 -0.4851 0.8399 0.0004 25 1 3.8646 -0.3620 -0.0014 26 1 3.9178 -3.0026 0.9303 27 1 3.7832 -3.0802 -0.8428 28 1 6.2054 -0.3808 0.9315 29 1 5.4549 -1.6323 1.9755 30 1 8.2667 -1.6158 0.7404 31 1 7.7891 -2.0207 2.4231 32 1 8.2004 -4.0246 0.6531 33 1 6.7971 -4.1084 1.7602 34 1 8.0225 -5.5104 -1.0471 35 1 6.6440 -6.2205 -0.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:36 Heat of formation + Delta-G solvation = -197.572128 kcal Electronic energy + Delta-G solvation = -22661.649699 eV Core-core repulsion = 18665.036762 eV Total energy + Delta-G solvation = -3996.612936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08820 -48.60614 -48.56492 -41.32726 -38.80133 -36.59910 -33.94737 -33.24273 -32.02225 -30.59556 -26.84784 -25.71489 -24.21471 -23.38924 -21.88018 -20.65973 -19.88686 -19.56705 -19.28039 -18.37942 -17.87972 -17.44833 -16.54225 -16.24651 -15.93354 -15.48932 -15.36964 -15.29840 -15.06412 -14.95897 -14.79748 -14.73747 -14.68568 -14.14507 -13.94843 -13.77383 -13.60946 -13.19557 -13.00484 -12.98332 -12.81804 -12.15089 -12.07691 -11.89169 -11.79329 -11.58539 -11.19313 -11.00178 -9.76587 -9.38264 -8.06947 -5.43030 1.33791 1.37248 1.41167 1.47157 1.48647 1.95442 2.45654 2.70717 2.96531 3.04685 3.23709 3.51156 3.58260 3.73911 3.83300 3.94976 4.12592 4.20729 4.29960 4.30604 4.52303 4.74320 4.81594 4.90530 5.01281 5.10718 5.17037 5.30876 5.40623 5.68177 6.15220 6.39454 6.94413 7.02150 7.73740 7.97321 9.14846 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.004684 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.538560 B = 5976.954061 C = 6815.090426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.244 4.244 8 H 0.045 0.955 9 N -0.749 5.749 10 C 0.153 3.847 11 C 0.132 3.868 12 H 0.060 0.940 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.088 3.912 16 N -0.606 5.606 17 C 0.518 3.482 18 O -0.573 6.573 19 C -0.173 4.173 20 C 0.464 3.536 21 F -0.190 7.190 22 F -0.175 7.175 23 F -0.194 7.194 24 H 0.260 0.740 25 H 0.369 0.631 26 H 0.025 0.975 27 H 0.005 0.995 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.007 -10.852 4.706 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.375 4.375 8 H 0.063 0.937 9 N -0.395 5.395 10 C 0.026 3.974 11 C 0.028 3.972 12 H 0.078 0.922 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.032 4.032 16 N -0.340 5.340 17 C 0.306 3.694 18 O -0.452 6.452 19 C -0.212 4.212 20 C 0.409 3.591 21 F -0.172 7.172 22 F -0.156 7.156 23 F -0.176 7.176 24 H 0.069 0.931 25 H 0.203 0.797 26 H 0.043 0.957 27 H 0.024 0.976 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.200 0.800 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 25.431 -10.939 4.128 27.990 hybrid contribution -0.819 0.792 -0.686 1.330 sum 24.612 -10.147 3.443 26.843 Atomic orbital electron populations 1.69898 1.07372 1.27017 1.59116 1.25598 0.96230 1.01631 1.01888 0.85338 0.79119 0.78756 0.78172 1.20765 1.21550 1.16346 1.18961 0.82639 0.93398 1.42474 0.93653 1.42419 1.02409 1.03638 1.91062 1.20944 0.91189 0.87827 0.97475 1.21642 0.90092 0.85444 1.00015 0.92221 1.22707 0.98411 1.00004 0.95317 1.22814 0.95094 0.93527 1.04242 1.22917 0.93970 0.99204 0.87134 1.48560 1.41343 1.18606 1.25456 1.20235 0.82037 0.85535 0.81581 1.90868 1.41249 1.79706 1.33392 1.23020 1.07724 0.92398 0.98084 1.20218 0.74068 0.79268 0.85531 1.93191 1.90585 1.80409 1.52984 1.93206 1.79492 1.46633 1.96313 1.93207 1.32831 1.94718 1.96846 0.93091 0.79683 0.95680 0.97647 0.89828 0.90515 0.89509 0.86799 0.86285 0.89124 0.80005 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.17 13.97 21.65 0.30 -64.87 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 45.85 27.73 68.60 1.90 47.75 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.24 -9.85 6.52 99.48 0.65 -9.20 16 7 C -0.24 -14.84 10.47 84.03 0.88 -13.96 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.75 -37.06 5.24 -343.45 -1.80 -38.86 16 10 C 0.15 6.46 5.64 86.38 0.49 6.94 16 11 C 0.13 3.99 2.94 45.34 0.13 4.13 16 12 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 13 C -0.13 -2.75 6.00 31.78 0.19 -2.56 16 14 C -0.12 -1.32 7.09 31.99 0.23 -1.09 16 15 C 0.09 0.92 6.67 86.80 0.58 1.50 16 16 N -0.61 -13.77 3.08 -787.24 -2.42 -16.19 16 17 C 0.52 13.56 7.35 87.66 0.64 14.20 16 18 O -0.57 -22.41 14.02 -3.02 -0.04 -22.46 16 19 C -0.17 -2.41 4.86 29.85 0.14 -2.26 16 20 C 0.46 10.11 2.89 71.98 0.21 10.31 16 21 F -0.19 -5.13 16.40 44.97 0.74 -4.39 16 22 F -0.18 -3.17 17.32 44.97 0.78 -2.39 16 23 F -0.19 -5.73 16.40 44.97 0.74 -4.99 16 24 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 25 H 0.37 16.77 5.25 -92.71 -0.49 16.28 16 26 H 0.03 1.05 8.06 -2.39 -0.02 1.03 16 27 H 0.01 0.27 6.92 -2.39 -0.02 0.25 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.84 7.80 -2.39 -0.02 1.82 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.31 7.53 -2.39 -0.02 0.29 16 33 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.18 0.80 7.78 -2.39 -0.02 0.78 16 35 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -85.86 302.86 4.73 -81.13 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.57 Total: 11.38 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 3.96 Total: 13.90 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.92 Total: -119.92 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 9 Polarization: -14.03 SS G_CDS: 2.25 Total: -11.78 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -85.86 4.73 -81.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.441 kcal (2) G-P(sol) polarization free energy of solvation -85.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds