Wall clock time and date at job start Tue Mar 31 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48502 * 109.46975 * 239.99576 * 3 2 1 5 5 H 1.48501 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 119.99703 * 3 2 1 7 7 C 1.38810 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99694 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46947 * 184.93619 * 10 9 7 12 12 H 1.09002 * 110.00210 * 54.23181 * 11 10 9 13 13 C 1.54328 * 109.88305 * 293.14176 * 11 10 9 14 14 C 1.55158 * 102.94461 * 218.39141 * 13 11 10 15 15 C 1.54913 * 101.57962 * 35.49842 * 14 13 11 16 16 N 1.47020 * 109.88442 * 175.33616 * 11 10 9 17 17 C 1.34785 * 125.64420 * 298.61756 * 16 11 10 18 18 O 1.21280 * 119.99888 * 354.65893 * 17 16 11 19 19 C 1.50695 * 119.99824 * 174.65022 * 17 16 11 20 20 C 1.53000 * 109.47076 * 180.02562 * 19 17 16 21 21 F 1.39907 * 109.47046 * 60.00007 * 20 19 17 22 22 F 1.39902 * 109.47234 * 180.02562 * 20 19 17 23 23 F 1.39899 * 109.47334 * 300.00278 * 20 19 17 24 24 H 0.97008 * 119.99407 * 0.02562 * 1 2 3 25 25 H 0.96992 * 119.99988 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46932 * 64.93395 * 10 9 7 27 27 H 1.08999 * 109.46893 * 304.93587 * 10 9 7 28 28 H 1.09005 * 110.71985 * 100.02539 * 13 11 10 29 29 H 1.08999 * 110.87011 * 336.82335 * 13 11 10 30 30 H 1.09006 * 111.00338 * 277.42830 * 14 13 11 31 31 H 1.08990 * 111.04025 * 153.58961 * 14 13 11 32 32 H 1.09000 * 110.36367 * 204.15523 * 15 14 13 33 33 H 1.09000 * 110.45652 * 81.88139 * 15 14 13 34 34 H 1.09004 * 109.47325 * 300.00085 * 19 17 16 35 35 H 1.08997 * 109.47399 * 60.00284 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0683 -4.8170 -0.1236 12 1 0.4347 -4.6745 -0.9990 13 6 0.1965 -4.9014 1.1470 14 6 0.0550 -6.4303 1.3705 15 6 1.4434 -6.9415 0.9113 16 7 1.7991 -6.0877 -0.2366 17 6 2.6568 -6.4154 -1.2234 18 8 2.8063 -5.6709 -2.1690 19 6 3.4301 -7.7069 -1.1515 20 6 4.3248 -7.8350 -2.3860 21 9 5.2176 -6.7586 -2.4286 22 9 5.0422 -9.0342 -2.3196 23 9 3.5324 -7.8294 -3.5389 24 1 -0.4850 0.8402 -0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6167 -3.7538 0.9314 27 1 2.7493 -3.6772 -0.8419 28 1 -0.7785 -4.4446 0.9768 29 1 0.6979 -4.4327 1.9938 30 1 -0.7390 -6.8442 0.7488 31 1 -0.1167 -6.6577 2.4225 32 1 1.3803 -7.9850 0.6027 33 1 2.1752 -6.8266 1.7108 34 1 4.0478 -7.7110 -0.2534 35 1 2.7346 -8.5454 -1.1179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:39 Heat of formation + Delta-G solvation = -175.665102 kcal Electronic energy + Delta-G solvation = -22598.180476 eV Core-core repulsion = 18602.517499 eV Total energy + Delta-G solvation = -3995.662976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.14073 -47.69487 -47.53372 -40.21076 -37.58841 -34.56107 -32.58317 -31.37741 -31.04609 -28.73235 -25.23380 -24.53998 -22.93142 -22.11223 -20.81217 -19.34197 -18.63094 -18.57708 -17.42604 -17.15172 -16.67369 -16.37804 -15.24499 -14.71787 -14.50749 -14.44043 -14.27064 -13.98473 -13.78780 -13.72678 -13.70480 -13.45192 -13.22635 -12.96558 -12.76124 -12.54925 -12.29119 -12.10803 -11.60958 -11.25401 -10.92081 -10.81608 -10.62025 -10.45865 -10.06575 -9.99515 -9.67897 -8.83651 -8.60689 -6.89924 -5.73638 -3.02122 2.37094 2.47452 2.91681 3.47775 3.51720 3.53436 3.57514 3.86242 3.90303 4.42157 4.48972 4.64602 4.74424 4.83497 4.85525 4.93394 5.27482 5.31308 5.48460 5.60238 5.73146 5.84319 5.94604 5.99596 6.11527 6.35875 6.44993 6.77459 6.92068 7.44111 7.73936 8.02319 8.45201 9.56403 10.11752 10.47505 11.49319 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.004571 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.431562 B = 6123.527185 C = 7167.760223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.080 0.920 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.095 3.905 16 N -0.608 5.608 17 C 0.528 3.472 18 O -0.508 6.508 19 C -0.191 4.191 20 C 0.472 3.528 21 F -0.171 7.171 22 F -0.186 7.186 23 F -0.173 7.173 24 H 0.255 0.745 25 H 0.383 0.617 26 H 0.016 0.984 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -21.635 2.679 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.018 3.982 11 C 0.028 3.972 12 H 0.098 0.902 13 C -0.160 4.160 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.343 5.343 17 C 0.314 3.686 18 O -0.382 6.382 19 C -0.232 4.232 20 C 0.417 3.583 21 F -0.152 7.152 22 F -0.167 7.167 23 F -0.154 7.154 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.599 -21.120 2.058 21.523 hybrid contribution 0.322 0.805 -0.079 0.871 sum 3.921 -20.315 1.979 20.784 Atomic orbital electron populations 1.69650 1.05081 1.25735 1.57922 1.24714 0.95538 0.97618 1.03006 0.86247 0.78516 0.83436 0.77886 1.21232 1.21662 1.21292 1.19172 0.91018 0.83995 1.42583 0.91293 1.42176 1.05731 0.99646 1.89649 1.20940 0.93626 0.85226 0.98445 1.21890 0.93533 0.82928 0.98811 0.90169 1.22690 1.00789 0.95002 0.97484 1.22791 0.95769 0.96655 1.01935 1.22417 0.97367 0.94313 0.88649 1.48414 1.43897 1.18149 1.23793 1.19304 0.80054 0.86780 0.82477 1.90885 1.64228 1.51621 1.31496 1.22962 1.00796 1.01293 0.98180 1.19727 0.79749 0.73586 0.85220 1.93249 1.69615 1.55580 1.96739 1.93187 1.79829 1.47112 1.96584 1.93226 1.73589 1.96083 1.52547 0.93498 0.78288 0.96659 0.94594 0.89569 0.89761 0.90654 0.89772 0.90791 0.90927 0.84548 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.89 5.45 -59.91 -0.33 -19.22 16 10 C 0.15 3.13 5.65 -4.04 -0.02 3.11 16 11 C 0.13 2.18 2.93 -66.95 -0.20 1.98 16 12 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 13 C -0.12 -1.64 6.07 -24.89 -0.15 -1.79 16 14 C -0.13 -1.20 7.09 -24.58 -0.17 -1.38 16 15 C 0.10 0.82 6.65 -2.53 -0.02 0.81 16 16 N -0.61 -8.11 3.07 -163.02 -0.50 -8.61 16 17 C 0.53 7.59 7.34 -10.98 -0.08 7.51 16 18 O -0.51 -9.90 14.00 5.56 0.08 -9.83 16 19 C -0.19 -1.76 4.85 -27.89 -0.14 -1.89 16 20 C 0.47 5.60 2.89 37.16 0.11 5.70 16 21 F -0.17 -2.50 16.40 2.25 0.04 -2.46 16 22 F -0.19 -1.93 17.32 2.25 0.04 -1.89 16 23 F -0.17 -2.42 16.40 2.25 0.04 -2.38 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.38 10.20 7.44 -40.82 -0.30 9.89 16 26 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 27 H 0.04 0.87 6.89 -51.93 -0.36 0.51 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.22 7.78 -51.93 -0.40 0.82 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.42 7.52 -51.93 -0.39 0.03 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.13 0.76 7.77 -51.93 -0.40 0.36 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -34.75 305.95 -5.60 -40.35 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.36 Total: 2.70 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.92 Total: 6.58 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.10 Total: -55.60 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.75 -5.60 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.315 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds