Wall clock time and date at job start Tue Mar 31 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48502 * 109.46975 * 239.99576 * 3 2 1 5 5 H 1.48501 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 119.99703 * 3 2 1 7 7 C 1.38810 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99694 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46947 * 184.93619 * 10 9 7 12 12 H 1.09002 * 110.00210 * 54.23181 * 11 10 9 13 13 C 1.54328 * 109.88305 * 293.14176 * 11 10 9 14 14 C 1.55158 * 102.94461 * 218.39141 * 13 11 10 15 15 C 1.54913 * 101.57962 * 35.49842 * 14 13 11 16 16 N 1.47020 * 109.88442 * 175.33616 * 11 10 9 17 17 C 1.34785 * 125.64420 * 298.61756 * 16 11 10 18 18 O 1.21280 * 119.99888 * 354.65893 * 17 16 11 19 19 C 1.50695 * 119.99824 * 174.65022 * 17 16 11 20 20 C 1.53000 * 109.47076 * 180.02562 * 19 17 16 21 21 F 1.39907 * 109.47046 * 60.00007 * 20 19 17 22 22 F 1.39902 * 109.47234 * 180.02562 * 20 19 17 23 23 F 1.39899 * 109.47334 * 300.00278 * 20 19 17 24 24 H 0.97008 * 119.99407 * 0.02562 * 1 2 3 25 25 H 0.96992 * 119.99988 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46932 * 64.93395 * 10 9 7 27 27 H 1.08999 * 109.46893 * 304.93587 * 10 9 7 28 28 H 1.09005 * 110.71985 * 100.02539 * 13 11 10 29 29 H 1.08999 * 110.87011 * 336.82335 * 13 11 10 30 30 H 1.09006 * 111.00338 * 277.42830 * 14 13 11 31 31 H 1.08990 * 111.04025 * 153.58961 * 14 13 11 32 32 H 1.09000 * 110.36367 * 204.15523 * 15 14 13 33 33 H 1.09000 * 110.45652 * 81.88139 * 15 14 13 34 34 H 1.09004 * 109.47325 * 300.00085 * 19 17 16 35 35 H 1.08997 * 109.47399 * 60.00284 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0683 -4.8170 -0.1236 12 1 0.4347 -4.6745 -0.9990 13 6 0.1965 -4.9014 1.1470 14 6 0.0550 -6.4303 1.3705 15 6 1.4434 -6.9415 0.9113 16 7 1.7991 -6.0877 -0.2366 17 6 2.6568 -6.4154 -1.2234 18 8 2.8063 -5.6709 -2.1690 19 6 3.4301 -7.7069 -1.1515 20 6 4.3248 -7.8350 -2.3860 21 9 5.2176 -6.7586 -2.4286 22 9 5.0422 -9.0342 -2.3196 23 9 3.5324 -7.8294 -3.5389 24 1 -0.4850 0.8402 -0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6167 -3.7538 0.9314 27 1 2.7493 -3.6772 -0.8419 28 1 -0.7785 -4.4446 0.9768 29 1 0.6979 -4.4327 1.9938 30 1 -0.7390 -6.8442 0.7488 31 1 -0.1167 -6.6577 2.4225 32 1 1.3803 -7.9850 0.6027 33 1 2.1752 -6.8266 1.7108 34 1 4.0478 -7.7110 -0.2534 35 1 2.7346 -8.5454 -1.1179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:39 Heat of formation + Delta-G solvation = -200.416458 kcal Electronic energy + Delta-G solvation = -22599.253775 eV Core-core repulsion = 18602.517499 eV Total energy + Delta-G solvation = -3996.736276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.08341 -48.60072 -48.55926 -41.31915 -38.76301 -36.44936 -33.85921 -33.05463 -31.99673 -30.24648 -26.75128 -25.74605 -24.46309 -23.37683 -21.88679 -20.50174 -19.70417 -19.55840 -19.02323 -18.36815 -17.84041 -17.47437 -16.50497 -16.28368 -15.83416 -15.47390 -15.34787 -15.11190 -15.06145 -14.96927 -14.90926 -14.73269 -14.67905 -14.06834 -13.80738 -13.62801 -13.54663 -13.05208 -12.97025 -12.91725 -12.74676 -12.24799 -12.04465 -11.91433 -11.76783 -11.57498 -11.16778 -10.95568 -9.74776 -9.06826 -7.99600 -5.29445 1.38351 1.44249 1.48035 1.48663 1.54341 1.96440 2.53335 2.71084 2.98749 3.05182 3.33154 3.54107 3.65204 3.83119 3.93073 4.11090 4.14735 4.21261 4.32979 4.34684 4.53341 4.74590 4.82627 4.93681 5.04233 5.14067 5.17279 5.33646 5.41126 5.44092 6.21968 6.42026 6.96483 7.28905 8.00120 8.27407 9.23369 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.004571 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.431562 B = 6123.527185 C = 7167.760223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.737 5.737 10 C 0.152 3.848 11 C 0.137 3.863 12 H 0.050 0.950 13 C -0.120 4.120 14 C -0.120 4.120 15 C 0.089 3.911 16 N -0.605 5.605 17 C 0.517 3.483 18 O -0.574 6.574 19 C -0.173 4.173 20 C 0.464 3.536 21 F -0.194 7.194 22 F -0.175 7.175 23 F -0.191 7.191 24 H 0.254 0.746 25 H 0.377 0.623 26 H 0.021 0.979 27 H 0.003 0.997 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.175 0.825 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -23.960 4.510 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.024 3.976 11 C 0.033 3.967 12 H 0.068 0.932 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.031 4.031 16 N -0.339 5.339 17 C 0.305 3.695 18 O -0.453 6.453 19 C -0.212 4.212 20 C 0.410 3.590 21 F -0.175 7.175 22 F -0.156 7.156 23 F -0.172 7.172 24 H 0.063 0.937 25 H 0.210 0.790 26 H 0.039 0.961 27 H 0.021 0.979 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.916 -23.509 3.931 24.155 hybrid contribution 0.252 1.491 -0.671 1.654 sum 4.168 -22.018 3.261 22.645 Atomic orbital electron populations 1.69797 1.06443 1.26383 1.58867 1.25545 0.96490 1.00943 1.03054 0.85203 0.77321 0.79030 0.78134 1.21025 1.21394 1.19958 1.19512 0.91213 0.85475 1.42349 0.91570 1.42308 1.05575 1.00639 1.89511 1.20946 0.94107 0.85560 0.96940 1.21557 0.92559 0.83213 0.99374 0.93189 1.22597 0.99140 0.99005 0.95062 1.22819 0.96549 0.92258 1.04102 1.22854 0.97285 0.95643 0.87362 1.48517 1.43100 1.17312 1.24960 1.20263 0.79779 0.87944 0.81477 1.90860 1.66216 1.54103 1.34127 1.23023 1.00924 0.99381 0.97888 1.20193 0.79782 0.73261 0.85774 1.93204 1.70523 1.56926 1.96861 1.93206 1.79660 1.46205 1.96524 1.93191 1.73992 1.96141 1.53893 0.93711 0.79035 0.96084 0.97938 0.90689 0.90855 0.89754 0.86785 0.86212 0.89000 0.80789 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.99 13.06 21.65 0.28 -59.71 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 4 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.25 -15.10 9.99 84.03 0.84 -14.26 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -39.85 5.45 -343.45 -1.87 -41.72 16 10 C 0.15 6.79 5.65 86.38 0.49 7.27 16 11 C 0.14 4.64 2.93 45.34 0.13 4.77 16 12 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.12 -3.13 6.07 31.78 0.19 -2.94 16 14 C -0.12 -1.70 7.09 31.99 0.23 -1.47 16 15 C 0.09 1.11 6.65 86.86 0.58 1.69 16 16 N -0.61 -15.09 3.07 -788.06 -2.42 -17.51 16 17 C 0.52 14.28 7.34 87.65 0.64 14.92 16 18 O -0.57 -23.24 14.00 -3.03 -0.04 -23.28 16 19 C -0.17 -2.54 4.85 29.85 0.14 -2.40 16 20 C 0.46 10.31 2.89 71.98 0.21 10.52 16 21 F -0.19 -5.69 16.40 44.97 0.74 -4.96 16 22 F -0.17 -3.20 17.32 44.97 0.78 -2.42 16 23 F -0.19 -5.27 16.40 44.97 0.74 -4.54 16 24 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 25 H 0.38 21.00 7.44 -92.71 -0.69 20.31 16 26 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 27 H 0.00 0.13 6.89 -2.39 -0.02 0.12 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 2.08 7.78 -2.39 -0.02 2.06 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 0.51 7.52 -2.39 -0.02 0.50 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.18 0.98 7.77 -2.39 -0.02 0.96 16 Total: -1.00 -81.23 305.95 4.58 -76.65 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.43 Total: 13.21 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 3.92 Total: 14.55 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -4.01 Total: -118.93 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.04 Total: -23.28 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 2.25 Total: -11.92 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -81.23 4.58 -76.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.764 kcal (2) G-P(sol) polarization free energy of solvation -81.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds