Wall clock time and date at job start Tue Mar 31 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00158 * 2 1 4 4 H 1.48495 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47132 * 59.99530 * 3 2 1 7 7 C 1.38817 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 325.63777 * 7 2 1 9 9 N 1.36933 * 119.99751 * 145.63931 * 7 2 1 10 10 C 1.47022 * 125.65341 * 333.90252 * 9 7 2 11 11 C 1.54318 * 107.27253 * 181.02674 * 10 9 7 12 12 C 1.55152 * 102.94511 * 22.18990 * 11 10 9 13 13 O 1.42898 * 111.00208 * 82.57361 * 12 11 10 14 14 C 1.53001 * 111.00408 * 206.38522 * 12 11 10 15 15 N 1.46498 * 109.47139 * 179.97438 * 14 12 11 16 16 C 1.34778 * 120.00405 * 180.02562 * 15 14 12 17 17 O 1.21698 * 119.99406 * 0.02562 * 16 15 14 18 18 C 1.46657 * 120.00008 * 180.02562 * 16 15 14 19 19 C 1.36544 * 125.98405 * 179.97438 * 18 16 15 20 20 C 1.40365 * 106.70558 * 179.97438 * 19 18 16 21 21 C 1.35123 * 107.11721 * 0.02562 * 20 19 18 22 22 O 1.33937 * 108.76464 * 359.75212 * 21 20 19 23 23 C 1.47424 * 125.64655 * 153.59410 * 9 7 2 24 24 H 0.97006 * 120.00091 * 185.06140 * 1 2 3 25 25 H 1.09006 * 109.87604 * 300.44400 * 10 9 7 26 26 H 1.08998 * 109.88202 * 61.60101 * 10 9 7 27 27 H 1.09001 * 110.71977 * 140.56146 * 11 10 9 28 28 H 1.09005 * 110.71794 * 263.65069 * 11 10 9 29 29 H 0.96701 * 113.99994 * 180.02562 * 13 12 11 30 30 H 1.08996 * 109.47358 * 300.00414 * 14 12 11 31 31 H 1.09001 * 109.47019 * 60.00516 * 14 12 11 32 32 H 0.97005 * 119.99917 * 0.02562 * 15 14 12 33 33 H 1.07996 * 126.64859 * 359.96215 * 19 18 16 34 34 H 1.08004 * 126.44320 * 179.97438 * 20 19 18 35 35 H 1.08002 * 125.61992 * 179.97438 * 21 20 19 36 36 H 1.09000 * 110.36988 * 274.74606 * 23 9 7 37 37 H 1.09005 * 110.36594 * 37.06989 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.6116 -2.0557 0.5289 9 7 3.2004 -1.3059 -0.6687 10 6 3.6072 -0.4934 -1.8245 11 6 5.0068 -0.9793 -2.2564 12 6 5.0705 -2.4163 -1.6747 13 8 4.4207 -3.3487 -2.5409 14 6 6.5174 -2.8363 -1.4082 15 7 6.5385 -4.1948 -0.8602 16 6 7.7129 -4.7768 -0.5463 17 8 8.7558 -4.1735 -0.7177 18 6 7.7340 -6.1369 0.0017 19 6 8.8481 -6.8405 0.3598 20 6 8.4046 -8.0861 0.8309 21 6 7.0564 -8.0884 0.7404 22 8 6.6557 -6.9103 0.2450 23 6 4.2887 -2.2464 -0.3457 24 1 -0.4850 -0.8368 0.0741 25 1 2.8987 -0.6303 -2.6416 26 1 3.6509 0.5583 -1.5414 27 1 5.0898 -0.9990 -3.3431 28 1 5.7842 -0.3501 -1.8230 29 1 4.4346 -4.2604 -2.2188 30 1 7.0807 -2.8116 -2.3410 31 1 6.9692 -2.1493 -0.6926 32 1 5.7071 -4.6755 -0.7233 33 1 9.8721 -6.5039 0.2932 34 1 9.0244 -8.8915 1.1963 35 1 6.4083 -8.9044 1.0244 36 1 4.9346 -1.8285 0.4264 37 1 3.8793 -3.2034 -0.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716914063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:51 Heat of formation + Delta-G solvation = -34.471156 kcal Electronic energy + Delta-G solvation = -21874.689683 eV Core-core repulsion = 18427.006076 eV Total energy + Delta-G solvation = -3447.683607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.95923 -39.92078 -38.57513 -35.40651 -34.37772 -33.32535 -32.39801 -30.69688 -29.75372 -28.45971 -26.01598 -23.84269 -22.61680 -22.00737 -20.87036 -20.30129 -20.14738 -18.96981 -17.51014 -16.94774 -16.64286 -16.41922 -15.80377 -15.27778 -15.03034 -14.59194 -14.25699 -13.64478 -13.51866 -13.41005 -13.30205 -13.08091 -12.97899 -12.93027 -12.31292 -11.82298 -11.33423 -11.16576 -10.87820 -10.68903 -10.60278 -10.37781 -10.30553 -9.79740 -9.57759 -9.39263 -9.28724 -8.95472 -8.25437 -7.07104 -6.32164 -3.26304 0.78634 2.05251 2.39208 2.95829 2.97499 3.46197 3.52833 3.67250 4.28129 4.37731 4.57416 4.58985 4.60421 4.73303 4.93898 5.10309 5.21581 5.31044 5.41707 5.45199 5.56060 5.64156 5.70038 5.86034 5.99390 6.02592 6.13236 6.15956 6.36500 6.41134 6.51142 6.71252 6.87551 7.18911 7.76024 7.85426 7.89389 8.36603 9.00216 9.59666 10.32962 11.04999 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.003980 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.128153 B = 7034.286178 C = 7459.184969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.049 2.951 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.343 4.343 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.127 3.873 11 C -0.114 4.114 12 C 0.102 3.898 13 O -0.536 6.536 14 C 0.102 3.898 15 N -0.715 5.715 16 C 0.604 3.396 17 O -0.521 6.521 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.227 4.227 21 C -0.005 4.005 22 O -0.163 6.163 23 C 0.109 3.891 24 H 0.266 0.734 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.365 0.635 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.404 0.596 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.211 0.789 36 H 0.030 0.970 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.190 -14.642 -0.707 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.208 4.208 3 Si 0.880 3.120 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.225 1.225 7 C -0.471 4.471 8 H 0.083 0.917 9 N -0.322 5.322 10 C 0.002 3.998 11 C -0.152 4.152 12 C 0.060 3.940 13 O -0.340 6.340 14 C -0.021 4.021 15 N -0.366 5.366 16 C 0.390 3.610 17 O -0.399 6.399 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.246 4.246 21 C -0.075 4.075 22 O -0.058 6.058 23 C -0.017 4.017 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.212 0.788 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.239 0.761 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.227 0.773 36 H 0.047 0.953 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.210 -11.878 -1.277 20.136 hybrid contribution 0.044 -2.609 0.731 2.710 sum 16.254 -14.487 -0.546 21.780 Atomic orbital electron populations 1.70919 1.06419 1.30542 1.46009 1.26067 0.96124 1.01023 0.97610 0.84029 0.75507 0.75952 0.76488 1.20575 1.21833 1.22535 1.19740 0.95662 0.97186 1.34475 0.91737 1.44526 1.14977 1.41747 1.30977 1.21590 0.92430 0.94992 0.90739 1.22568 0.99248 0.92119 1.01272 1.22718 0.88427 0.90699 0.92152 1.86625 1.79629 1.19611 1.48168 1.22117 0.98019 0.82208 0.99786 1.45857 1.08575 1.17451 1.64756 1.16511 0.84237 0.82510 0.77739 1.90889 1.32085 1.62605 1.54273 1.22099 0.85619 0.94202 1.11081 1.21985 0.99603 0.93493 0.99086 1.21876 0.95049 0.99544 1.08158 1.24455 0.96075 0.87373 0.99556 1.84083 1.34794 1.23744 1.63174 1.22296 0.91094 0.95438 0.92893 0.92366 0.94200 0.95107 0.90177 0.90036 0.78803 0.90180 0.89785 0.76051 0.82208 0.82555 0.77255 0.95287 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.70 55.49 0.76 -27.20 16 2 C 0.00 -0.13 5.29 -17.43 -0.09 -0.22 16 3 Si 1.05 26.28 26.22 -169.99 -4.46 21.82 16 4 H -0.28 -6.56 6.18 56.52 0.35 -6.21 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.34 -9.86 10.24 -15.06 -0.15 -10.01 16 8 H 0.06 1.96 8.06 -52.48 -0.42 1.54 16 9 N -0.60 -14.66 3.05 -169.93 -0.52 -15.18 16 10 C 0.13 2.82 6.04 -3.07 -0.02 2.80 16 11 C -0.11 -1.92 6.15 -24.90 -0.15 -2.07 16 12 C 0.10 1.64 0.97 -88.35 -0.09 1.55 16 13 O -0.54 -8.67 13.21 -35.23 -0.47 -9.13 16 14 C 0.10 1.38 4.89 -4.04 -0.02 1.36 16 15 N -0.71 -8.79 5.20 -61.63 -0.32 -9.11 16 16 C 0.60 8.11 7.79 -12.86 -0.10 8.01 16 17 O -0.52 -8.41 16.87 5.19 0.09 -8.32 16 18 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 19 C -0.12 -1.23 10.62 -39.39 -0.42 -1.65 16 20 C -0.23 -1.76 10.87 -39.89 -0.43 -2.19 16 21 C 0.00 -0.03 12.08 29.62 0.36 0.32 16 22 O -0.16 -1.66 10.40 5.01 0.05 -1.61 16 23 C 0.11 2.14 6.23 -2.41 -0.02 2.13 16 24 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.71 3.85 -51.93 -0.20 0.51 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 29 H 0.37 4.54 7.69 45.56 0.35 4.89 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.40 4.39 7.04 -40.82 -0.29 4.11 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.03 0.58 7.99 -51.93 -0.41 0.16 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -35.04 313.55 -5.51 -40.54 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.98 Total: 4.60 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.40 Total: -1.15 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.08 Total: -51.49 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.33 Total: -19.06 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.46 Total: 21.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.04 -5.51 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.073 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds