Wall clock time and date at job start Tue Mar 31 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00158 * 2 1 4 4 H 1.48495 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47132 * 59.99530 * 3 2 1 7 7 C 1.38817 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 325.63777 * 7 2 1 9 9 N 1.36933 * 119.99751 * 145.63931 * 7 2 1 10 10 C 1.47022 * 125.65341 * 333.90252 * 9 7 2 11 11 C 1.54318 * 107.27253 * 181.02674 * 10 9 7 12 12 C 1.55152 * 102.94511 * 22.18990 * 11 10 9 13 13 O 1.42898 * 111.00208 * 82.57361 * 12 11 10 14 14 C 1.53001 * 111.00408 * 206.38522 * 12 11 10 15 15 N 1.46498 * 109.47139 * 179.97438 * 14 12 11 16 16 C 1.34778 * 120.00405 * 180.02562 * 15 14 12 17 17 O 1.21698 * 119.99406 * 0.02562 * 16 15 14 18 18 C 1.46657 * 120.00008 * 180.02562 * 16 15 14 19 19 C 1.36544 * 125.98405 * 179.97438 * 18 16 15 20 20 C 1.40365 * 106.70558 * 179.97438 * 19 18 16 21 21 C 1.35123 * 107.11721 * 0.02562 * 20 19 18 22 22 O 1.33937 * 108.76464 * 359.75212 * 21 20 19 23 23 C 1.47424 * 125.64655 * 153.59410 * 9 7 2 24 24 H 0.97006 * 120.00091 * 185.06140 * 1 2 3 25 25 H 1.09006 * 109.87604 * 300.44400 * 10 9 7 26 26 H 1.08998 * 109.88202 * 61.60101 * 10 9 7 27 27 H 1.09001 * 110.71977 * 140.56146 * 11 10 9 28 28 H 1.09005 * 110.71794 * 263.65069 * 11 10 9 29 29 H 0.96701 * 113.99994 * 180.02562 * 13 12 11 30 30 H 1.08996 * 109.47358 * 300.00414 * 14 12 11 31 31 H 1.09001 * 109.47019 * 60.00516 * 14 12 11 32 32 H 0.97005 * 119.99917 * 0.02562 * 15 14 12 33 33 H 1.07996 * 126.64859 * 359.96215 * 19 18 16 34 34 H 1.08004 * 126.44320 * 179.97438 * 20 19 18 35 35 H 1.08002 * 125.61992 * 179.97438 * 21 20 19 36 36 H 1.09000 * 110.36988 * 274.74606 * 23 9 7 37 37 H 1.09005 * 110.36594 * 37.06989 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.6116 -2.0557 0.5289 9 7 3.2004 -1.3059 -0.6687 10 6 3.6072 -0.4934 -1.8245 11 6 5.0068 -0.9793 -2.2564 12 6 5.0705 -2.4163 -1.6747 13 8 4.4207 -3.3487 -2.5409 14 6 6.5174 -2.8363 -1.4082 15 7 6.5385 -4.1948 -0.8602 16 6 7.7129 -4.7768 -0.5463 17 8 8.7558 -4.1735 -0.7177 18 6 7.7340 -6.1369 0.0017 19 6 8.8481 -6.8405 0.3598 20 6 8.4046 -8.0861 0.8309 21 6 7.0564 -8.0884 0.7404 22 8 6.6557 -6.9103 0.2450 23 6 4.2887 -2.2464 -0.3457 24 1 -0.4850 -0.8368 0.0741 25 1 2.8987 -0.6303 -2.6416 26 1 3.6509 0.5583 -1.5414 27 1 5.0898 -0.9990 -3.3431 28 1 5.7842 -0.3501 -1.8230 29 1 4.4346 -4.2604 -2.2188 30 1 7.0807 -2.8116 -2.3410 31 1 6.9692 -2.1493 -0.6926 32 1 5.7071 -4.6755 -0.7233 33 1 9.8721 -6.5039 0.2932 34 1 9.0244 -8.8915 1.1963 35 1 6.4083 -8.9044 1.0244 36 1 4.9346 -1.8285 0.4264 37 1 3.8793 -3.2034 -0.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716914063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:50 Heat of formation + Delta-G solvation = -63.159067 kcal Electronic energy + Delta-G solvation = -21875.933684 eV Core-core repulsion = 18427.006076 eV Total energy + Delta-G solvation = -3448.927608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.65797 -41.06814 -39.88846 -36.97318 -35.49189 -34.41501 -34.03354 -31.94942 -31.04311 -29.83258 -27.52198 -25.31858 -23.75179 -22.70492 -22.47750 -21.53360 -21.36402 -19.90885 -19.52906 -18.05454 -17.44901 -17.38129 -17.09590 -16.56262 -16.37261 -16.09151 -15.49862 -15.27437 -15.06600 -14.72678 -14.47576 -14.14780 -13.94857 -13.66218 -13.56570 -13.48512 -13.03810 -12.87644 -12.51751 -12.36865 -11.96604 -11.67515 -11.52124 -11.29933 -11.06154 -11.03379 -10.45063 -10.39677 -9.67170 -9.17805 -8.56840 -5.49943 -0.00512 1.41327 1.43747 1.52888 1.61338 1.71717 2.04435 2.10110 2.51836 2.92277 3.06789 3.29516 3.51692 3.69456 3.74393 3.82106 3.95014 4.10321 4.35010 4.38142 4.55361 4.61194 4.70694 4.77539 4.83134 4.89397 4.91692 4.94414 5.01132 5.14851 5.22170 5.38557 5.69961 5.79911 6.14544 6.26109 6.65606 6.81085 6.86945 7.48865 8.19437 8.75325 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.003980 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.128153 B = 7034.286178 C = 7459.184969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.059 4.059 3 Si 1.094 2.906 4 H -0.253 1.253 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.338 4.338 8 H 0.030 0.970 9 N -0.616 5.616 10 C 0.117 3.883 11 C -0.107 4.107 12 C 0.120 3.880 13 O -0.550 6.550 14 C 0.115 3.885 15 N -0.710 5.710 16 C 0.605 3.395 17 O -0.555 6.555 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.234 4.234 21 C 0.009 3.991 22 O -0.174 6.174 23 C 0.104 3.896 24 H 0.251 0.749 25 H 0.016 0.984 26 H 0.030 0.970 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.381 0.619 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.252 0.748 36 H 0.037 0.963 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.577 -15.634 -0.891 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.256 4.256 3 Si 0.919 3.081 4 H -0.178 1.178 5 H -0.210 1.210 6 H -0.223 1.223 7 C -0.467 4.467 8 H 0.048 0.952 9 N -0.343 5.343 10 C -0.007 4.007 11 C -0.145 4.145 12 C 0.078 3.922 13 O -0.357 6.357 14 C -0.009 4.009 15 N -0.361 5.361 16 C 0.393 3.607 17 O -0.436 6.436 18 C -0.164 4.164 19 C -0.143 4.143 20 C -0.252 4.252 21 C -0.060 4.060 22 O -0.070 6.070 23 C -0.021 4.021 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.230 0.770 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.179 0.821 34 H 0.202 0.798 35 H 0.268 0.732 36 H 0.055 0.945 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 18.615 -12.916 -1.466 22.704 hybrid contribution -0.734 -2.541 0.831 2.773 sum 17.881 -15.457 -0.634 23.644 Atomic orbital electron populations 1.71042 1.07559 1.29700 1.49274 1.27273 0.96098 1.04573 0.97665 0.83462 0.75754 0.72174 0.76744 1.17783 1.21031 1.22263 1.19620 0.97394 0.96015 1.33665 0.95210 1.44604 1.15137 1.42937 1.31669 1.21731 0.95074 0.94797 0.89123 1.22612 0.96493 0.92573 1.02837 1.22471 0.89205 0.90747 0.89786 1.86595 1.79912 1.20859 1.48333 1.21922 0.95778 0.82761 1.00464 1.45770 1.08785 1.17087 1.64481 1.16696 0.83775 0.83105 0.77156 1.90858 1.33060 1.63738 1.55953 1.21814 0.86569 0.94202 1.13835 1.22276 0.99478 0.94406 0.98120 1.22236 0.95640 0.99287 1.08068 1.25391 0.96845 0.86849 0.96935 1.84073 1.34582 1.24666 1.63653 1.22490 0.90212 0.94052 0.95383 0.93927 0.96542 0.95263 0.88097 0.87249 0.76992 0.89103 0.89576 0.75293 0.82077 0.79795 0.73178 0.94515 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.70 21.65 0.30 -59.62 16 2 C -0.06 -3.50 5.29 84.86 0.45 -3.05 16 3 Si 1.09 53.00 26.22 68.60 1.80 54.80 16 4 H -0.25 -11.05 6.18 99.48 0.61 -10.43 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.34 -19.89 10.24 84.04 0.86 -19.03 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 N -0.62 -30.15 3.05 -691.54 -2.11 -32.27 16 10 C 0.12 5.03 6.04 86.73 0.52 5.55 16 11 C -0.11 -3.29 6.15 31.78 0.20 -3.10 16 12 C 0.12 3.57 0.97 -9.33 -0.01 3.56 16 13 O -0.55 -16.73 13.21 -148.98 -1.97 -18.70 16 14 C 0.11 2.79 4.89 86.38 0.42 3.21 16 15 N -0.71 -16.30 5.20 -467.10 -2.43 -18.73 16 16 C 0.60 15.63 7.79 86.44 0.67 16.30 16 17 O -0.56 -17.52 16.87 -4.34 -0.07 -17.59 16 18 C -0.11 -2.49 7.13 24.07 0.17 -2.32 16 19 C -0.12 -2.30 10.62 22.39 0.24 -2.06 16 20 C -0.23 -2.93 10.87 22.07 0.24 -2.69 16 21 C 0.01 0.10 12.08 67.10 0.81 0.92 16 22 O -0.17 -3.22 10.40 -4.99 -0.05 -3.27 16 23 C 0.10 3.96 6.23 86.93 0.54 4.50 16 24 H 0.25 16.21 8.73 -92.70 -0.81 15.40 16 25 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.03 1.28 3.85 -2.39 -0.01 1.27 16 27 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 28 H 0.11 2.79 8.04 -2.38 -0.02 2.77 16 29 H 0.38 8.78 7.69 -74.06 -0.57 8.21 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.41 8.32 7.04 -92.70 -0.65 7.67 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.25 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.04 1.38 7.99 -2.39 -0.02 1.36 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -78.21 313.55 0.34 -77.87 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.24 Total: 15.72 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 5.12 Total: 1.79 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -4.24 Total: -110.62 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.09 Total: -39.56 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.80 Total: 54.80 kcal Total: -78.21 0.34 -77.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.709 kcal (2) G-P(sol) polarization free energy of solvation -78.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds