Wall clock time and date at job start Tue Mar 31 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35129 * 125.61622 * 2 1 4 4 C 1.40358 * 107.11524 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.71200 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.99153 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00150 * 359.71572 * 6 5 4 8 8 N 1.34777 * 120.00210 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00488 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47303 * 180.02562 * 9 8 6 11 11 O 1.42892 * 112.94657 * 53.40492 * 10 9 8 12 12 C 1.53945 * 113.73757 * 281.66963 * 10 9 8 13 13 N 1.47580 * 86.11725 * 222.05077 * 12 10 9 14 14 C 1.36937 * 134.49084 * 204.64287 * 13 12 10 15 15 H 1.08002 * 120.00120 * 173.47879 * 14 13 12 16 16 C 1.38817 * 120.00352 * 353.48246 * 14 13 12 17 17 N 1.31621 * 119.99879 * 5.06693 * 16 14 13 18 18 Si 1.86801 * 120.00163 * 185.06367 * 16 14 13 19 19 H 1.48496 * 109.46653 * 94.99116 * 18 16 14 20 20 H 1.48504 * 109.47053 * 214.98582 * 18 16 14 21 21 H 1.48494 * 109.47146 * 334.98741 * 18 16 14 22 22 C 1.47579 * 91.01633 * 24.64219 * 13 12 10 23 23 O 1.33932 * 125.61657 * 180.29473 * 2 1 3 24 24 H 1.08997 * 109.46554 * 90.00489 * 1 2 3 25 25 H 1.08997 * 109.47148 * 210.00320 * 1 2 3 26 26 H 1.08995 * 109.47026 * 330.01114 * 1 2 3 27 27 H 1.08001 * 126.44017 * 0.04444 * 3 2 1 28 28 H 1.08001 * 126.64688 * 179.97438 * 4 3 2 29 29 H 0.97000 * 120.00026 * 0.02562 * 8 6 5 30 30 H 1.09010 * 109.46902 * 300.00082 * 9 8 6 31 31 H 1.08997 * 109.46706 * 59.99669 * 9 8 6 32 32 H 0.96699 * 114.00477 * 309.66620 * 11 10 9 33 33 H 1.08999 * 113.77501 * 336.35652 * 12 10 9 34 34 H 1.09004 * 113.76422 * 107.74773 * 12 10 9 35 35 H 0.96992 * 120.00287 * 179.97438 * 17 16 14 36 36 H 1.08995 * 113.77298 * 221.06074 * 22 13 12 37 37 H 1.09002 * 113.76499 * 89.65556 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5824 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8680 -1.1499 -0.0077 8 7 4.5591 -2.9454 -0.0004 9 6 5.7169 -3.8430 -0.0020 10 6 5.2363 -5.2955 -0.0012 11 8 4.3150 -5.5781 -1.0563 12 6 4.7729 -5.7942 1.3796 13 7 5.4897 -7.0434 1.0576 14 6 5.3783 -8.3460 1.4650 15 1 5.9729 -9.1128 0.9908 16 6 4.5012 -8.6810 2.4875 17 7 3.7047 -7.7657 2.9975 18 14 4.4514 -10.4307 3.1396 19 1 5.3267 -10.5388 4.3343 20 1 3.0574 -10.7799 3.5142 21 1 4.9303 -11.3644 2.0889 22 6 6.3745 -6.3249 0.1202 23 8 2.2870 -1.0888 -0.0056 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5136 27 1 1.9613 2.1260 0.0007 28 1 4.5113 1.2703 -0.0011 29 1 3.6611 -3.3123 0.0005 30 1 6.3174 -3.6599 -0.8931 31 1 6.3203 -3.6590 0.8869 32 1 3.5822 -4.9502 -1.1173 33 1 5.2053 -5.2421 2.2140 34 1 3.6929 -5.9162 1.4628 35 1 3.0915 -7.9997 3.7116 36 1 6.5734 -6.8707 -0.8021 37 1 7.2775 -5.9287 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716932295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:30 Heat of formation + Delta-G solvation = -9.025411 kcal Electronic energy + Delta-G solvation = -21554.039811 eV Core-core repulsion = 18107.459614 eV Total energy + Delta-G solvation = -3446.580197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.86863 -39.75523 -38.53726 -34.98260 -34.16910 -33.38233 -32.23680 -31.97375 -29.02066 -27.39243 -25.75873 -24.99648 -22.67854 -21.81404 -21.60227 -20.34434 -19.40480 -18.68529 -16.80210 -16.66062 -16.24273 -15.99526 -15.42626 -15.06630 -14.76226 -14.14935 -13.99221 -13.58157 -13.50933 -13.37632 -13.25812 -13.16027 -13.02157 -12.69598 -12.27205 -12.19324 -11.79802 -11.08647 -10.96183 -10.75896 -10.53858 -10.30949 -10.21566 -9.82896 -9.53693 -9.30847 -9.04599 -8.82300 -8.63411 -6.89956 -5.79510 -3.10453 0.90788 2.13615 2.43860 3.11637 3.14130 3.39489 3.44466 3.46551 4.35747 4.42904 4.49945 4.68890 4.71229 4.96924 5.06036 5.10838 5.18797 5.26193 5.33146 5.45177 5.55862 5.63413 5.71532 5.76083 5.98426 6.17263 6.23609 6.35223 6.49598 6.54722 6.68966 7.01076 7.12942 7.38760 7.50102 7.94564 8.00363 8.12265 9.02502 9.68759 10.55576 11.38487 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.003782 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.624629 B = 7402.463838 C = 8136.473056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.226 4.226 4 C -0.119 4.119 5 C -0.078 4.078 6 C 0.603 3.397 7 O -0.523 6.523 8 N -0.712 5.712 9 C 0.101 3.899 10 C 0.062 3.938 11 O -0.526 6.526 12 C 0.147 3.853 13 N -0.602 5.602 14 C -0.220 4.220 15 H 0.082 0.918 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.136 3.864 23 O -0.160 6.160 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.404 0.596 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.362 0.638 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 17.577 -6.743 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.140 4.140 5 C -0.129 4.129 6 C 0.389 3.611 7 O -0.401 6.401 8 N -0.363 5.363 9 C -0.023 4.023 10 C 0.019 3.981 11 O -0.330 6.330 12 C 0.021 3.979 13 N -0.328 5.328 14 C -0.348 4.348 15 H 0.100 0.900 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.010 3.990 23 O -0.056 6.056 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.208 0.792 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.597 16.751 -6.659 18.603 hybrid contribution -0.773 -0.367 0.672 1.088 sum -5.370 16.384 -5.987 18.251 Atomic orbital electron populations 1.20431 0.84538 1.04651 1.03984 1.22844 0.94340 0.84085 1.02011 1.21578 0.92354 0.99771 1.10816 1.21932 0.98611 0.92938 1.00482 1.22078 0.81882 0.94665 1.14324 1.16514 0.86013 0.81513 0.77042 1.90876 1.22057 1.76137 1.51058 1.45850 1.11111 1.05413 1.73940 1.22165 0.87960 0.88953 1.03208 1.23805 0.93455 0.89958 0.90865 1.86612 1.38929 1.55149 1.52277 1.22846 0.99357 0.85511 0.90214 1.45636 1.34887 1.03078 1.49163 1.19012 1.20404 0.81843 1.13495 0.90039 1.24805 0.99051 0.98020 0.98477 1.69818 1.25374 1.32454 1.29199 0.86093 0.76964 0.83741 0.78967 1.21609 1.21703 1.20496 1.22560 0.91831 0.90211 0.94408 1.84024 1.15969 1.34957 1.70693 0.89555 0.89895 0.88980 0.82716 0.82257 0.76088 0.90677 0.89823 0.79169 0.94574 0.90789 0.93655 0.92605 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.41 36.01 0.38 -0.08 16 2 C 0.02 0.19 7.31 -35.41 -0.26 -0.07 16 3 C -0.23 -2.14 10.77 -39.89 -0.43 -2.56 16 4 C -0.12 -1.38 10.62 -39.40 -0.42 -1.80 16 5 C -0.08 -1.03 7.13 -36.80 -0.26 -1.29 16 6 C 0.60 9.06 7.79 -12.86 -0.10 8.96 16 7 O -0.52 -9.22 16.86 5.20 0.09 -9.13 16 8 N -0.71 -10.02 5.33 -61.63 -0.33 -10.35 16 9 C 0.10 1.57 5.28 -4.04 -0.02 1.55 16 10 C 0.06 1.15 1.52 -89.69 -0.14 1.01 16 11 O -0.53 -9.67 13.51 -35.23 -0.48 -10.15 16 12 C 0.15 3.38 6.83 -2.98 -0.02 3.36 16 13 N -0.60 -15.61 3.70 -177.80 -0.66 -16.27 16 14 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 15 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.39 11.51 55.49 0.64 -26.75 16 18 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.14 2.83 8.34 -2.97 -0.02 2.80 16 23 O -0.16 -1.94 10.40 4.98 0.05 -1.89 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.40 5.11 7.06 -40.82 -0.29 4.82 16 30 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 31 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 32 H 0.36 5.09 7.61 45.56 0.35 5.44 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.44 16 34 H 0.07 1.88 7.36 -51.93 -0.38 1.50 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -34.76 323.54 -6.47 -41.23 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.08 Total: 6.00 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.55 Total: 5.14 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.35 Total: -53.37 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.34 Total: -21.17 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.76 -6.47 -41.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716932295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.202 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds