Wall clock time and date at job start Tue Mar 31 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35129 * 125.61622 * 2 1 4 4 C 1.40358 * 107.11524 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.71200 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.99153 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00150 * 359.71572 * 6 5 4 8 8 N 1.34777 * 120.00210 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00488 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47303 * 180.02562 * 9 8 6 11 11 O 1.42892 * 112.94657 * 53.40492 * 10 9 8 12 12 C 1.53945 * 113.73757 * 281.66963 * 10 9 8 13 13 N 1.47580 * 86.11725 * 222.05077 * 12 10 9 14 14 C 1.36937 * 134.49084 * 204.64287 * 13 12 10 15 15 H 1.08002 * 120.00120 * 173.47879 * 14 13 12 16 16 C 1.38817 * 120.00352 * 353.48246 * 14 13 12 17 17 N 1.31621 * 119.99879 * 5.06693 * 16 14 13 18 18 Si 1.86801 * 120.00163 * 185.06367 * 16 14 13 19 19 H 1.48496 * 109.46653 * 94.99116 * 18 16 14 20 20 H 1.48504 * 109.47053 * 214.98582 * 18 16 14 21 21 H 1.48494 * 109.47146 * 334.98741 * 18 16 14 22 22 C 1.47579 * 91.01633 * 24.64219 * 13 12 10 23 23 O 1.33932 * 125.61657 * 180.29473 * 2 1 3 24 24 H 1.08997 * 109.46554 * 90.00489 * 1 2 3 25 25 H 1.08997 * 109.47148 * 210.00320 * 1 2 3 26 26 H 1.08995 * 109.47026 * 330.01114 * 1 2 3 27 27 H 1.08001 * 126.44017 * 0.04444 * 3 2 1 28 28 H 1.08001 * 126.64688 * 179.97438 * 4 3 2 29 29 H 0.97000 * 120.00026 * 0.02562 * 8 6 5 30 30 H 1.09010 * 109.46902 * 300.00082 * 9 8 6 31 31 H 1.08997 * 109.46706 * 59.99669 * 9 8 6 32 32 H 0.96699 * 114.00477 * 309.66620 * 11 10 9 33 33 H 1.08999 * 113.77501 * 336.35652 * 12 10 9 34 34 H 1.09004 * 113.76422 * 107.74773 * 12 10 9 35 35 H 0.96992 * 120.00287 * 179.97438 * 17 16 14 36 36 H 1.08995 * 113.77298 * 221.06074 * 22 13 12 37 37 H 1.09002 * 113.76499 * 89.65556 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5824 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8680 -1.1499 -0.0077 8 7 4.5591 -2.9454 -0.0004 9 6 5.7169 -3.8430 -0.0020 10 6 5.2363 -5.2955 -0.0012 11 8 4.3150 -5.5781 -1.0563 12 6 4.7729 -5.7942 1.3796 13 7 5.4897 -7.0434 1.0576 14 6 5.3783 -8.3460 1.4650 15 1 5.9729 -9.1128 0.9908 16 6 4.5012 -8.6810 2.4875 17 7 3.7047 -7.7657 2.9975 18 14 4.4514 -10.4307 3.1396 19 1 5.3267 -10.5388 4.3343 20 1 3.0574 -10.7799 3.5142 21 1 4.9303 -11.3644 2.0889 22 6 6.3745 -6.3249 0.1202 23 8 2.2870 -1.0888 -0.0056 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5136 27 1 1.9613 2.1260 0.0007 28 1 4.5113 1.2703 -0.0011 29 1 3.6611 -3.3123 0.0005 30 1 6.3174 -3.6599 -0.8931 31 1 6.3203 -3.6590 0.8869 32 1 3.5822 -4.9502 -1.1173 33 1 5.2053 -5.2421 2.2140 34 1 3.6929 -5.9162 1.4628 35 1 3.0915 -7.9997 3.7116 36 1 6.5734 -6.8707 -0.8021 37 1 7.2775 -5.9287 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716932295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:30 Heat of formation + Delta-G solvation = -36.222385 kcal Electronic energy + Delta-G solvation = -21555.219161 eV Core-core repulsion = 18107.459614 eV Total energy + Delta-G solvation = -3447.759546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.71124 -41.12351 -40.00547 -36.57159 -35.47317 -34.23578 -34.02436 -32.94828 -30.50668 -28.68072 -27.18278 -26.72982 -24.12019 -22.99927 -22.61683 -21.35207 -20.99457 -19.81133 -18.76634 -17.61805 -17.54735 -17.30373 -16.90199 -16.24213 -16.15877 -15.77172 -15.56046 -15.04383 -14.67907 -14.50224 -14.12119 -14.02721 -13.96750 -13.91354 -13.71343 -13.43746 -12.99441 -12.86947 -12.77380 -12.59169 -12.23009 -11.84663 -11.63074 -11.28110 -11.04719 -10.98307 -10.77491 -10.35564 -9.47193 -8.94836 -7.94325 -5.26454 -0.02705 1.34413 1.44620 1.46585 1.55107 1.55738 2.04340 2.06957 2.45308 3.01092 3.24279 3.31868 3.51475 3.63291 3.83465 3.90642 3.95421 4.32665 4.54087 4.58985 4.66111 4.70291 4.74390 4.74667 4.76082 4.92522 4.94175 5.11131 5.15161 5.15920 5.27424 5.46645 5.47099 5.83092 5.89269 6.29053 6.74495 6.89022 6.89758 7.57038 8.50988 9.23324 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.003782 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.624629 B = 7402.463838 C = 8136.473056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.229 4.229 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.605 3.395 7 O -0.556 6.556 8 N -0.707 5.707 9 C 0.116 3.884 10 C 0.096 3.904 11 O -0.539 6.539 12 C 0.145 3.855 13 N -0.635 5.635 14 C -0.236 4.236 15 H 0.083 0.917 16 C -0.065 4.065 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.132 3.868 23 O -0.173 6.173 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.186 0.814 28 H 0.165 0.835 29 H 0.410 0.590 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.382 0.618 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.249 0.751 36 H 0.060 0.940 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 18.653 -7.492 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.248 4.248 4 C -0.137 4.137 5 C -0.164 4.164 6 C 0.393 3.607 7 O -0.437 6.437 8 N -0.359 5.359 9 C -0.008 4.008 10 C 0.053 3.947 11 O -0.345 6.345 12 C 0.019 3.981 13 N -0.362 5.362 14 C -0.364 4.364 15 H 0.101 0.899 16 C -0.258 4.258 17 N -0.601 5.601 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.192 1.192 22 C 0.006 3.994 23 O -0.070 6.070 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.204 0.796 28 H 0.183 0.817 29 H 0.247 0.753 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.231 0.769 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.342 17.842 -7.440 20.055 hybrid contribution -0.623 -0.613 0.855 1.222 sum -5.964 17.228 -6.585 19.384 Atomic orbital electron populations 1.20676 0.81637 1.05876 1.05414 1.23739 0.95917 0.83532 0.99701 1.21949 0.91117 1.01292 1.10439 1.22239 1.00045 0.92487 0.98891 1.21768 0.82038 0.94838 1.17780 1.16691 0.86285 0.81561 0.76173 1.90845 1.23424 1.76652 1.52759 1.45740 1.11014 1.05250 1.73856 1.21890 0.88294 0.86921 1.03739 1.23205 0.92093 0.91289 0.88113 1.86562 1.39832 1.56514 1.51635 1.22782 0.97314 0.85205 0.92754 1.46013 1.36919 1.03120 1.50112 1.19403 1.20011 0.83505 1.13495 0.89885 1.25642 0.99062 1.02051 0.99048 1.69995 1.26148 1.34306 1.29655 0.85048 0.76575 0.79308 0.78347 1.21347 1.21949 1.19226 1.22800 0.92732 0.90238 0.93602 1.84010 1.15687 1.36178 1.71148 0.87848 0.89900 0.86502 0.79628 0.81735 0.75314 0.89300 0.90135 0.76937 0.95469 0.93802 0.94194 0.92164 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.41 71.24 0.74 0.08 16 2 C 0.02 0.40 7.31 24.97 0.18 0.58 16 3 C -0.23 -3.77 10.77 22.07 0.24 -3.53 16 4 C -0.12 -2.56 10.62 22.39 0.24 -2.32 16 5 C -0.11 -2.93 7.13 24.07 0.17 -2.76 16 6 C 0.60 18.08 7.79 86.44 0.67 18.75 16 7 O -0.56 -19.59 16.86 -4.32 -0.07 -19.66 16 8 N -0.71 -19.63 5.33 -467.10 -2.49 -22.12 16 9 C 0.12 3.49 5.28 86.38 0.46 3.95 16 10 C 0.10 3.49 1.52 -10.13 -0.02 3.48 16 11 O -0.54 -19.34 13.51 -148.98 -2.01 -21.35 16 12 C 0.15 6.83 6.83 86.48 0.59 7.42 16 13 N -0.64 -33.25 3.70 -720.26 -2.66 -35.92 16 14 C -0.24 -13.59 10.70 84.03 0.90 -12.69 16 15 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 16 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 17 N -0.95 -57.90 11.51 21.65 0.25 -57.65 16 18 Si 0.98 46.33 29.56 68.60 2.03 48.36 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.13 5.35 8.34 86.48 0.72 6.07 16 23 O -0.17 -4.03 10.40 -5.08 -0.05 -4.09 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.41 10.27 7.06 -92.71 -0.65 9.61 16 30 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.08 2.52 8.05 -2.39 -0.02 2.50 16 32 H 0.38 10.34 7.61 -74.06 -0.56 9.77 16 33 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 34 H 0.04 2.30 7.36 -2.38 -0.02 2.29 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 2.70 8.10 -2.39 -0.02 2.69 16 Total: -1.00 -75.78 323.54 0.24 -75.54 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.11 Total: 21.17 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.36 Total: 15.73 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.90 Total: -115.69 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -2.14 Total: -45.10 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.78 0.24 -75.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716932295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.315 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds