Wall clock time and date at job start Tue Mar 31 2020 01:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48499 * 109.47099 * 239.99422 * 3 2 1 5 5 H 1.48497 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47148 * 119.99876 * 3 2 1 7 7 C 1.38818 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99713 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99654 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46987 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.50886 * 59.90698 * 11 10 9 13 13 C 1.53300 * 109.51138 * 180.02562 * 11 10 9 14 14 N 1.47152 * 108.38394 * 172.23068 * 13 11 10 15 15 C 1.34773 * 120.98252 * 129.19308 * 14 13 11 16 16 O 1.21699 * 120.00155 * 353.12838 * 15 14 13 17 17 C 1.46661 * 120.00121 * 173.13747 * 15 14 13 18 18 C 1.36543 * 125.98653 * 172.61909 * 17 15 14 19 19 C 1.40368 * 106.70503 * 179.85374 * 18 17 15 20 20 C 1.35127 * 107.11555 * 0.40285 * 19 18 17 21 21 O 1.33940 * 108.76877 * 359.74921 * 20 19 18 22 22 C 1.47148 * 118.03275 * 309.46482 * 14 13 11 23 23 C 1.53289 * 108.38728 * 50.53542 * 22 14 13 24 24 O 1.42954 * 109.51465 * 299.74873 * 11 10 9 25 25 H 0.97005 * 120.00128 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00547 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46942 * 60.00353 * 10 9 7 28 28 H 1.09001 * 109.47245 * 300.00315 * 10 9 7 29 29 H 1.08993 * 109.68147 * 52.50501 * 13 11 10 30 30 H 1.09000 * 109.70884 * 291.96754 * 13 11 10 31 31 H 1.07993 * 126.64849 * 359.95709 * 18 17 15 32 32 H 1.08001 * 126.44380 * 180.15748 * 19 18 17 33 33 H 1.08000 * 125.62158 * 179.78206 * 20 19 18 34 34 H 1.09007 * 109.67980 * 170.26032 * 22 14 13 35 35 H 1.09000 * 109.67959 * 290.80958 * 22 14 13 36 36 H 1.09007 * 109.51283 * 187.77189 * 23 22 14 37 37 H 1.09003 * 109.51189 * 67.62447 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4352 -4.7618 -0.8876 13 6 1.8292 -6.1479 0.0018 14 7 0.8622 -7.2408 0.1912 15 6 0.8450 -8.3034 -0.6376 16 8 1.5492 -8.3124 -1.6302 17 6 -0.0224 -9.4488 -0.3436 18 6 -0.2435 -10.5188 -1.1625 19 6 -1.1308 -11.3693 -0.4845 20 6 -1.4159 -10.7841 0.6997 21 8 -0.7461 -9.6270 0.7809 22 6 -0.0895 -7.1363 1.3086 23 6 -0.7615 -5.7600 1.2443 24 8 0.2456 -4.7479 1.1713 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3880 -0.0002 27 1 2.6846 -3.7146 0.8906 28 1 2.6847 -3.7146 -0.8894 29 1 2.5537 -6.1536 0.8160 30 1 2.3452 -6.2752 -0.9498 31 1 0.1831 -10.6804 -2.1414 32 1 -1.5166 -12.3120 -0.8435 33 1 -2.0749 -11.1837 1.4563 34 1 -0.8444 -7.9178 1.2222 35 1 0.4419 -7.2415 2.2545 36 1 -1.3663 -5.6080 2.1384 37 1 -1.3971 -5.7061 0.3605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717163357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:42 Heat of formation + Delta-G solvation = -29.890600 kcal Electronic energy + Delta-G solvation = -21796.933433 eV Core-core repulsion = 18349.448453 eV Total energy + Delta-G solvation = -3447.484979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.05576 -40.18286 -38.31282 -35.17502 -34.43366 -33.37557 -32.26607 -30.56834 -29.96174 -28.07986 -25.84751 -23.60578 -23.41712 -22.11448 -21.87881 -20.81914 -20.07129 -17.97029 -17.15098 -17.02473 -16.60160 -16.46229 -15.95269 -15.29656 -14.94379 -14.54901 -14.50936 -14.04778 -13.56158 -13.44327 -13.26341 -13.09993 -13.01245 -12.67883 -12.40410 -11.98044 -11.56480 -11.00229 -10.87716 -10.76101 -10.62210 -10.40204 -10.25472 -10.01500 -9.90703 -9.66270 -9.08144 -8.83792 -8.56936 -6.86845 -5.70307 -2.99027 0.76821 2.03377 2.29584 2.76731 2.96496 3.48412 3.52137 3.53549 3.96591 4.17027 4.55610 4.58810 4.62875 4.75399 4.94578 5.10826 5.12620 5.25158 5.29911 5.41031 5.45112 5.61875 5.63675 5.71051 5.76024 5.86207 5.94592 5.98565 6.23771 6.29137 6.52041 6.57346 6.70657 7.09826 7.46182 7.73671 7.80425 8.47794 9.59433 10.16697 10.52830 11.52459 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044542 B = 0.003335 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.467377 B = 8393.235437 C = 8732.864552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.604 5.604 15 C 0.601 3.399 16 O -0.520 6.520 17 C -0.074 4.074 18 C -0.120 4.120 19 C -0.224 4.224 20 C -0.015 4.015 21 O -0.159 6.159 22 C 0.063 3.937 23 C 0.047 3.953 24 O -0.356 6.356 25 H 0.255 0.745 26 H 0.388 0.612 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.210 0.790 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -24.092 2.756 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.014 3.986 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.336 5.336 15 C 0.389 3.611 16 O -0.398 6.398 17 C -0.125 4.125 18 C -0.141 4.141 19 C -0.243 4.243 20 C -0.084 4.084 21 O -0.055 6.055 22 C -0.059 4.059 23 C -0.031 4.031 24 O -0.274 6.274 25 H 0.065 0.935 26 H 0.222 0.778 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.226 0.774 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.616 -23.582 2.614 24.001 hybrid contribution -0.097 0.394 -0.172 0.441 sum -3.713 -23.188 2.442 23.610 Atomic orbital electron populations 1.69667 1.05121 1.25669 1.57611 1.24744 0.95524 0.97666 1.03032 0.86248 0.78483 0.83499 0.77828 1.21284 1.21720 1.21270 1.19187 0.90996 0.84100 1.42842 0.91177 1.42202 1.06067 0.99422 1.89342 1.20629 0.92326 0.84672 0.98845 1.22809 0.93093 0.94100 0.88569 0.91762 1.22456 0.91357 0.85391 1.04502 1.48047 1.35346 1.20449 1.29795 1.16691 0.81146 0.80465 0.82761 1.90884 1.42446 1.80013 1.26458 1.22083 1.02405 1.00006 0.88039 1.21997 0.98533 0.92626 1.00943 1.21864 1.03510 1.02980 0.95913 1.24541 0.98431 0.85443 1.00011 1.84244 1.47690 1.35890 1.37680 1.22898 0.93232 1.00099 0.89684 1.22927 0.90884 0.86388 1.02919 1.88170 1.46196 1.50591 1.42404 0.93518 0.77812 0.95313 0.94593 0.89922 0.87718 0.82201 0.82611 0.77388 0.87471 0.90123 0.87576 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.18 5.50 -59.90 -0.33 -19.51 16 10 C 0.16 3.40 5.95 -4.04 -0.02 3.38 16 11 C 0.07 1.28 2.86 -26.57 -0.08 1.20 16 12 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 13 C 0.09 1.26 5.95 -3.53 -0.02 1.23 16 14 N -0.60 -8.29 3.02 -173.83 -0.52 -8.82 16 15 C 0.60 8.65 7.66 -12.86 -0.10 8.55 16 16 O -0.52 -8.89 16.35 5.19 0.08 -8.80 16 17 C -0.07 -0.87 6.77 -36.80 -0.25 -1.12 16 18 C -0.12 -1.23 10.63 -39.39 -0.42 -1.65 16 19 C -0.22 -1.66 10.87 -39.89 -0.43 -2.09 16 20 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 21 O -0.16 -1.52 7.29 4.98 0.04 -1.48 16 22 C 0.06 0.72 6.26 -3.54 -0.02 0.70 16 23 C 0.05 0.62 6.99 37.31 0.26 0.88 16 24 O -0.36 -6.37 10.14 -35.23 -0.36 -6.72 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.39 10.90 7.55 -40.82 -0.31 10.59 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.57 7.06 -51.93 -0.37 1.20 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.11 1.06 4.43 -52.32 -0.23 0.83 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -34.77 314.08 -6.31 -41.08 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.68 Total: 6.10 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.97 Total: 3.79 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.13 Total: -56.50 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.24 Total: -17.00 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.77 -6.31 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717163357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.189 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds