Wall clock time and date at job start Tue Mar 31 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48499 * 109.47099 * 239.99422 * 3 2 1 5 5 H 1.48497 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47148 * 119.99876 * 3 2 1 7 7 C 1.38818 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99713 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99654 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46987 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.50886 * 59.90698 * 11 10 9 13 13 C 1.53300 * 109.51138 * 180.02562 * 11 10 9 14 14 N 1.47152 * 108.38394 * 172.23068 * 13 11 10 15 15 C 1.34773 * 120.98252 * 129.19308 * 14 13 11 16 16 O 1.21699 * 120.00155 * 353.12838 * 15 14 13 17 17 C 1.46661 * 120.00121 * 173.13747 * 15 14 13 18 18 C 1.36543 * 125.98653 * 172.61909 * 17 15 14 19 19 C 1.40368 * 106.70503 * 179.85374 * 18 17 15 20 20 C 1.35127 * 107.11555 * 0.40285 * 19 18 17 21 21 O 1.33940 * 108.76877 * 359.74921 * 20 19 18 22 22 C 1.47148 * 118.03275 * 309.46482 * 14 13 11 23 23 C 1.53289 * 108.38728 * 50.53542 * 22 14 13 24 24 O 1.42954 * 109.51465 * 299.74873 * 11 10 9 25 25 H 0.97005 * 120.00128 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00547 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46942 * 60.00353 * 10 9 7 28 28 H 1.09001 * 109.47245 * 300.00315 * 10 9 7 29 29 H 1.08993 * 109.68147 * 52.50501 * 13 11 10 30 30 H 1.09000 * 109.70884 * 291.96754 * 13 11 10 31 31 H 1.07993 * 126.64849 * 359.95709 * 18 17 15 32 32 H 1.08001 * 126.44380 * 180.15748 * 19 18 17 33 33 H 1.08000 * 125.62158 * 179.78206 * 20 19 18 34 34 H 1.09007 * 109.67980 * 170.26032 * 22 14 13 35 35 H 1.09000 * 109.67959 * 290.80958 * 22 14 13 36 36 H 1.09007 * 109.51283 * 187.77189 * 23 22 14 37 37 H 1.09003 * 109.51189 * 67.62447 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4352 -4.7618 -0.8876 13 6 1.8292 -6.1479 0.0018 14 7 0.8622 -7.2408 0.1912 15 6 0.8450 -8.3034 -0.6376 16 8 1.5492 -8.3124 -1.6302 17 6 -0.0224 -9.4488 -0.3436 18 6 -0.2435 -10.5188 -1.1625 19 6 -1.1308 -11.3693 -0.4845 20 6 -1.4159 -10.7841 0.6997 21 8 -0.7461 -9.6270 0.7809 22 6 -0.0895 -7.1363 1.3086 23 6 -0.7615 -5.7600 1.2443 24 8 0.2456 -4.7479 1.1713 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3880 -0.0002 27 1 2.6846 -3.7146 0.8906 28 1 2.6847 -3.7146 -0.8894 29 1 2.5537 -6.1536 0.8160 30 1 2.3452 -6.2752 -0.9498 31 1 0.1831 -10.6804 -2.1414 32 1 -1.5166 -12.3120 -0.8435 33 1 -2.0749 -11.1837 1.4563 34 1 -0.8444 -7.9178 1.2222 35 1 0.4419 -7.2415 2.2545 36 1 -1.3663 -5.6080 2.1384 37 1 -1.3971 -5.7061 0.3605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717163357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:41 Heat of formation + Delta-G solvation = -55.432112 kcal Electronic energy + Delta-G solvation = -21798.040996 eV Core-core repulsion = 18349.448453 eV Total energy + Delta-G solvation = -3448.592542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.74782 -41.31245 -39.54252 -36.72187 -35.91720 -34.09890 -33.94967 -32.08378 -30.98864 -29.32896 -27.39179 -25.11900 -24.60491 -23.28012 -22.74232 -22.13769 -20.97615 -19.26091 -18.84599 -17.98050 -17.64318 -17.46491 -17.13051 -16.60053 -16.34759 -15.94436 -15.75314 -15.41393 -15.04953 -14.56171 -14.43090 -14.26729 -14.06484 -13.94319 -13.58791 -13.31411 -12.88835 -12.75106 -12.64524 -12.31882 -12.09882 -11.89376 -11.78472 -11.39809 -11.20124 -11.02148 -10.94710 -9.92426 -9.57316 -9.01037 -7.93490 -5.23336 -0.03395 1.40475 1.42889 1.48179 1.52141 1.58087 1.87770 2.02827 2.56994 2.72005 3.33259 3.40149 3.53969 3.84874 3.87900 3.92486 4.03516 4.07718 4.13008 4.29595 4.39041 4.44173 4.58238 4.65074 4.69697 4.79614 4.88967 4.92266 4.96744 5.06504 5.19014 5.41039 5.48474 5.80723 6.10429 6.18250 6.27634 6.75183 7.33750 8.07464 8.32558 9.30137 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044542 B = 0.003335 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.467377 B = 8393.235437 C = 8732.864552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.048 0.952 13 C 0.095 3.905 14 N -0.607 5.607 15 C 0.598 3.402 16 O -0.561 6.561 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.233 4.233 20 C 0.011 3.989 21 O -0.164 6.164 22 C 0.071 3.929 23 C 0.041 3.959 24 O -0.385 6.385 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.257 0.743 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -25.950 3.974 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.034 3.966 11 C 0.027 3.973 12 H 0.066 0.934 13 C -0.028 4.028 14 N -0.339 5.339 15 C 0.388 3.612 16 O -0.442 6.442 17 C -0.161 4.161 18 C -0.141 4.141 19 C -0.252 4.252 20 C -0.058 4.058 21 O -0.061 6.061 22 C -0.051 4.051 23 C -0.036 4.036 24 O -0.303 6.303 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.174 0.826 32 H 0.201 0.799 33 H 0.273 0.727 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.013 -25.478 3.848 26.078 hybrid contribution -0.054 0.798 -0.517 0.952 sum -4.067 -24.680 3.331 25.234 Atomic orbital electron populations 1.69840 1.06751 1.26173 1.59293 1.25637 0.96452 1.01293 1.03516 0.85141 0.77138 0.78766 0.78265 1.20258 1.22075 1.20248 1.19648 0.91634 0.85211 1.41610 0.90313 1.42398 1.05714 1.00824 1.89408 1.20777 0.92965 0.83793 0.99103 1.22492 0.92477 0.94201 0.88107 0.93414 1.22224 0.91396 0.84457 1.04747 1.48123 1.35463 1.19965 1.30338 1.17037 0.80985 0.81061 0.82071 1.90844 1.44300 1.80997 1.28066 1.21577 1.04657 1.00076 0.89825 1.22266 0.98378 0.92659 1.00803 1.22214 1.03107 1.03834 0.96003 1.25538 0.96440 0.83459 1.00368 1.84177 1.47801 1.37316 1.36772 1.22977 0.93301 0.99421 0.89374 1.23205 0.90146 0.86367 1.03883 1.88107 1.47306 1.52768 1.42145 0.93984 0.79301 0.94889 0.93701 0.88677 0.88311 0.82550 0.79859 0.72688 0.85480 0.88799 0.85102 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.25 -14.47 9.99 84.04 0.84 -13.63 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -39.94 5.50 -343.44 -1.89 -41.82 16 10 C 0.16 6.77 5.95 86.38 0.51 7.28 16 11 C 0.09 3.08 2.86 30.70 0.09 3.17 16 12 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 13 C 0.09 2.81 5.95 86.36 0.51 3.32 16 14 N -0.61 -16.49 3.02 -822.09 -2.48 -18.97 16 15 C 0.60 17.32 7.66 86.44 0.66 17.99 16 16 O -0.56 -19.84 16.35 -4.34 -0.07 -19.91 16 17 C -0.11 -2.49 6.77 24.07 0.16 -2.32 16 18 C -0.12 -2.30 10.63 22.39 0.24 -2.07 16 19 C -0.23 -2.69 10.87 22.07 0.24 -2.45 16 20 C 0.01 0.10 12.08 67.10 0.81 0.91 16 21 O -0.16 -2.68 7.29 -5.11 -0.04 -2.72 16 22 C 0.07 1.51 6.26 86.35 0.54 2.05 16 23 C 0.04 1.05 6.99 72.08 0.50 1.55 16 24 O -0.38 -13.82 10.14 -148.98 -1.51 -15.33 16 25 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 26 H 0.38 21.77 7.55 -92.71 -0.70 21.07 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.10 3.04 7.06 -2.39 -0.02 3.03 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.26 -0.35 8.06 -2.91 -0.02 -0.38 16 34 H 0.13 2.23 4.43 -8.67 -0.04 2.19 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.90 314.08 2.27 -74.64 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.37 Total: 24.21 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.58 Total: 11.71 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.09 Total: -121.80 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.62 Total: -37.96 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.90 2.27 -74.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717163357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.205 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds