Wall clock time and date at job start Tue Mar 31 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21589 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.47538 * 120.00338 * 180.02562 * 16 15 14 19 19 C 1.39706 * 120.19048 * 359.97438 * 18 16 15 20 20 C 1.37789 * 119.91079 * 179.97438 * 19 18 16 21 21 C 1.38542 * 120.29616 * 0.02562 * 20 19 18 22 22 C 1.38060 * 120.39440 * 359.97438 * 21 20 19 23 23 C 1.38705 * 120.08319 * 359.74138 * 22 21 20 24 24 O 1.35654 * 120.15472 * 180.28322 * 23 22 21 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 28 28 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 29 29 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 31 31 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 32 32 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 33 33 H 1.08005 * 120.04469 * 359.95827 * 19 18 16 34 34 H 1.08000 * 119.84657 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.80445 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.95900 * 180.02562 * 22 21 20 37 37 H 0.96696 * 113.99366 * 270.25603 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3957 -6.2380 2.1996 18 6 -0.5050 -4.7489 3.9939 19 6 -0.1154 -3.5132 4.5165 20 6 -0.5396 -3.1333 5.7712 21 6 -1.3511 -3.9717 6.5182 22 6 -1.7436 -5.1954 6.0138 23 6 -1.3307 -5.5915 4.7503 24 8 -1.7202 -6.7911 4.2510 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 2.9714 -3.2065 -1.9118 28 1 3.0422 -4.9242 -1.4507 29 1 1.3826 -4.5188 -3.1200 30 1 0.3131 -4.9198 -0.0486 31 1 1.7556 -5.6782 0.6673 32 1 1.0064 -3.4871 2.2843 33 1 0.5178 -2.8567 3.9379 34 1 -0.2381 -2.1777 6.1740 35 1 -1.6786 -3.6661 7.5010 36 1 -2.3766 -5.8433 6.6020 37 1 -1.1194 -7.5187 4.4622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717759997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:57 Heat of formation + Delta-G solvation = -86.984012 kcal Electronic energy + Delta-G solvation = -21751.766253 eV Core-core repulsion = 18301.805518 eV Total energy + Delta-G solvation = -3449.960735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22763 -38.42761 -37.01005 -36.61287 -34.83845 -33.47170 -31.78278 -30.80669 -29.76013 -28.26423 -25.47805 -23.76545 -23.31235 -22.32849 -20.15665 -20.02398 -18.43860 -17.65183 -17.18500 -16.60380 -16.06984 -15.57899 -15.24837 -14.90385 -14.64922 -14.45388 -14.06877 -13.85939 -13.42784 -13.31073 -12.88469 -12.78675 -12.34042 -12.19270 -11.90843 -11.68060 -11.40364 -10.90808 -10.86939 -10.65859 -10.55337 -10.08859 -9.80636 -9.47564 -9.33471 -9.06905 -9.00135 -8.72293 -8.47526 -7.05331 -5.82869 -3.13595 0.85607 1.23712 3.09316 3.37052 3.42817 3.45650 3.57924 3.86602 4.24114 4.50847 4.80758 4.85210 4.93226 5.01056 5.31370 5.37492 5.40881 5.51907 5.56877 5.71018 5.83552 5.89963 6.02830 6.05508 6.20113 6.25694 6.36444 6.41540 6.50996 6.69894 6.75538 6.94337 7.61214 7.73975 7.99035 8.21316 8.33796 8.63644 9.46095 10.01657 10.38328 11.38554 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.005304 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.196841 B = 5278.068806 C = 6786.127664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.709 5.709 16 C 0.552 3.448 17 O -0.537 6.537 18 C -0.159 4.159 19 C -0.065 4.065 20 C -0.137 4.137 21 C -0.083 4.083 22 C -0.162 4.162 23 C 0.163 3.837 24 O -0.478 6.478 25 H 0.255 0.745 26 H 0.389 0.611 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.364 0.636 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -9.880 10.381 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.339 3.661 17 O -0.416 6.416 18 C -0.163 4.163 19 C -0.084 4.084 20 C -0.155 4.155 21 C -0.101 4.101 22 C -0.180 4.180 23 C 0.116 3.884 24 O -0.288 6.288 25 H 0.066 0.934 26 H 0.224 0.776 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.208 0.792 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.329 -10.032 10.400 14.511 hybrid contribution 0.970 1.136 -0.395 1.545 sum 2.299 -8.897 10.005 13.584 Atomic orbital electron populations 1.69694 1.05083 1.25630 1.56730 1.24755 0.95437 0.97641 1.02618 0.86165 0.78735 0.84257 0.77234 1.20601 1.21883 1.21850 1.19263 0.90936 0.84040 1.43732 0.91131 1.42396 1.06092 0.99052 1.87997 1.20603 0.95018 0.87057 0.91950 0.91674 1.23023 0.86511 0.97269 0.95355 1.86578 1.32129 1.92091 1.25506 1.21546 0.99530 0.96858 0.82520 1.45922 1.50546 1.21769 1.17889 1.18020 0.78835 0.84596 0.84657 1.90760 1.56467 1.22510 1.71827 1.20537 1.02112 0.97244 0.96414 1.21444 0.97300 0.94241 0.95383 1.21138 0.99284 1.00366 0.94748 1.21191 0.96048 0.93223 0.99685 1.21401 1.03100 0.98553 0.94986 1.18504 0.92212 0.87346 0.90314 1.84762 1.50697 1.15682 1.77648 0.93448 0.77640 0.93329 0.95531 0.79158 0.90520 0.92097 0.75543 0.84565 0.85113 0.85388 0.85039 0.75100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 13.06 55.49 0.72 -26.41 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.47 9.93 -15.06 -0.15 -6.62 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.71 -16.97 4.51 -53.42 -0.24 -17.21 16 10 C 0.16 3.14 2.84 -67.93 -0.19 2.95 16 11 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.13 12.64 -35.23 -0.45 -10.57 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 15 N -0.71 -12.66 5.34 -61.35 -0.33 -12.99 16 16 C 0.55 10.13 7.76 -12.47 -0.10 10.03 16 17 O -0.54 -11.16 15.16 -16.59 -0.25 -11.41 16 18 C -0.16 -2.51 5.89 -104.84 -0.62 -3.13 16 19 C -0.06 -0.90 9.54 -39.20 -0.37 -1.28 16 20 C -0.14 -1.59 10.02 -39.63 -0.40 -1.98 16 21 C -0.08 -0.86 10.03 -39.53 -0.40 -1.26 16 22 C -0.16 -1.85 9.98 -39.47 -0.39 -2.25 16 23 C 0.16 2.34 6.72 -38.69 -0.26 2.08 16 24 O -0.48 -6.92 11.58 -40.54 -0.47 -7.39 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.39 10.38 7.80 -40.82 -0.32 10.06 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.36 4.74 9.12 45.56 0.42 5.16 16 30 H 0.08 1.60 7.39 -51.93 -0.38 1.21 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 7.16 6.17 -40.82 -0.25 6.91 16 33 H 0.14 1.88 6.40 -52.48 -0.34 1.54 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.39 3.98 9.06 45.56 0.41 4.39 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -33.86 322.09 -6.88 -40.75 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -2.96 Total: 22.24 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.74 Total: 1.70 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.16 Total: -56.62 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.17 Total: -29.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.86 -6.88 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717759997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.238 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds