Wall clock time and date at job start Tue Mar 31 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21589 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.47538 * 120.00338 * 180.02562 * 16 15 14 19 19 C 1.39706 * 120.19048 * 359.97438 * 18 16 15 20 20 C 1.37789 * 119.91079 * 179.97438 * 19 18 16 21 21 C 1.38542 * 120.29616 * 0.02562 * 20 19 18 22 22 C 1.38060 * 120.39440 * 359.97438 * 21 20 19 23 23 C 1.38705 * 120.08319 * 359.74138 * 22 21 20 24 24 O 1.35654 * 120.15472 * 180.28322 * 23 22 21 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 28 28 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 29 29 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 31 31 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 32 32 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 33 33 H 1.08005 * 120.04469 * 359.95827 * 19 18 16 34 34 H 1.08000 * 119.84657 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.80445 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.95900 * 180.02562 * 22 21 20 37 37 H 0.96696 * 113.99366 * 270.25603 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3957 -6.2380 2.1996 18 6 -0.5050 -4.7489 3.9939 19 6 -0.1154 -3.5132 4.5165 20 6 -0.5396 -3.1333 5.7712 21 6 -1.3511 -3.9717 6.5182 22 6 -1.7436 -5.1954 6.0138 23 6 -1.3307 -5.5915 4.7503 24 8 -1.7202 -6.7911 4.2510 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 2.9714 -3.2065 -1.9118 28 1 3.0422 -4.9242 -1.4507 29 1 1.3826 -4.5188 -3.1200 30 1 0.3131 -4.9198 -0.0486 31 1 1.7556 -5.6782 0.6673 32 1 1.0064 -3.4871 2.2843 33 1 0.5178 -2.8567 3.9379 34 1 -0.2381 -2.1777 6.1740 35 1 -1.6786 -3.6661 7.5010 36 1 -2.3766 -5.8433 6.6020 37 1 -1.1194 -7.5187 4.4622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717759997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:57 Heat of formation + Delta-G solvation = -114.792513 kcal Electronic energy + Delta-G solvation = -21752.972120 eV Core-core repulsion = 18301.805518 eV Total energy + Delta-G solvation = -3451.166603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41460 -39.71001 -38.49819 -37.64566 -36.37462 -35.18541 -33.35102 -32.11957 -30.76031 -29.97630 -26.84813 -25.65987 -24.50267 -23.35390 -21.65254 -21.37548 -19.67474 -19.25726 -18.46392 -18.16785 -17.41506 -16.74930 -16.63372 -16.14750 -16.03316 -15.92688 -15.42657 -15.18203 -14.99830 -14.79937 -14.41974 -14.15804 -13.69843 -13.29914 -13.12335 -13.03004 -12.75610 -12.66179 -12.62553 -12.21382 -11.87246 -11.75272 -11.71189 -11.04112 -10.78264 -10.71671 -10.18161 -9.91558 -9.64666 -9.01539 -7.89800 -5.19790 -0.19620 0.28148 1.49910 1.51227 1.60346 1.87480 2.23624 2.57908 2.76893 3.26195 3.42389 3.60371 3.73414 3.84365 3.89787 4.03552 4.11790 4.37476 4.43542 4.43653 4.54908 4.59328 4.75060 4.86472 4.91385 4.98864 5.21073 5.25995 5.33034 5.45346 5.48333 5.55712 5.81148 6.28345 6.56340 6.82314 7.06330 7.21728 7.36368 8.07899 8.34069 9.33194 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.005304 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.196841 B = 5278.068806 C = 6786.127664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.302 1.302 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.083 0.917 9 N -0.723 5.723 10 C 0.161 3.839 11 H 0.081 0.919 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.708 5.708 16 C 0.548 3.452 17 O -0.570 6.570 18 C -0.191 4.191 19 C -0.076 4.076 20 C -0.138 4.138 21 C -0.067 4.067 22 C -0.157 4.157 23 C 0.147 3.853 24 O -0.496 6.496 25 H 0.248 0.752 26 H 0.371 0.629 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.385 0.615 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.128 0.872 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -9.909 12.155 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.230 1.230 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.052 3.948 11 H 0.099 0.901 12 C -0.016 4.016 13 O -0.392 6.392 14 C 0.006 3.994 15 N -0.360 5.360 16 C 0.336 3.664 17 O -0.452 6.452 18 C -0.194 4.194 19 C -0.095 4.095 20 C -0.156 4.156 21 C -0.085 4.085 22 C -0.175 4.175 23 C 0.101 3.899 24 O -0.309 6.309 25 H 0.057 0.943 26 H 0.203 0.797 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.233 0.767 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.176 0.824 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.452 -10.102 12.164 16.001 hybrid contribution 0.651 1.037 -0.904 1.522 sum 3.103 -9.066 11.259 14.785 Atomic orbital electron populations 1.69865 1.06746 1.25721 1.59426 1.25501 0.96109 1.00876 1.03865 0.85135 0.78411 0.80232 0.76282 1.18734 1.23022 1.22176 1.19666 0.91525 0.84741 1.40858 0.89911 1.42501 1.05323 1.00271 1.88188 1.20864 0.95068 0.85273 0.93643 0.90081 1.22876 0.86511 0.98692 0.93517 1.86533 1.32946 1.92267 1.27417 1.21393 0.98385 0.97355 0.82280 1.45918 1.50612 1.21770 1.17678 1.18522 0.78146 0.84069 0.85649 1.90720 1.57728 1.23823 1.72891 1.20481 1.04486 0.98854 0.95602 1.21479 0.97797 0.93636 0.96611 1.21479 0.98874 1.01523 0.93698 1.21674 0.93997 0.91960 1.00840 1.21709 1.02675 0.99362 0.93795 1.18807 0.92479 0.87196 0.91401 1.84708 1.51473 1.16402 1.78295 0.94291 0.79730 0.94353 0.91551 0.76664 0.93416 0.90275 0.75457 0.85410 0.82705 0.81303 0.82350 0.73487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.24 -12.21 9.93 84.04 0.83 -11.37 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.72 -34.63 4.51 -322.93 -1.46 -36.08 16 10 C 0.16 6.01 2.84 44.99 0.13 6.14 16 11 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 12 C 0.06 2.15 6.86 71.98 0.49 2.64 16 13 O -0.58 -20.79 12.64 -148.98 -1.88 -22.67 16 14 C 0.13 4.80 5.12 86.38 0.44 5.24 16 15 N -0.71 -25.97 5.34 -466.28 -2.49 -28.46 16 16 C 0.55 20.75 7.76 86.70 0.67 21.43 16 17 O -0.57 -24.52 15.16 16.92 0.26 -24.26 16 18 C -0.19 -6.09 5.89 -20.01 -0.12 -6.21 16 19 C -0.08 -2.10 9.54 22.52 0.21 -1.89 16 20 C -0.14 -2.86 10.02 22.24 0.22 -2.64 16 21 C -0.07 -1.14 10.03 22.30 0.22 -0.92 16 22 C -0.16 -3.19 9.98 22.34 0.22 -2.97 16 23 C 0.15 4.16 6.72 22.84 0.15 4.31 16 24 O -0.50 -14.44 11.58 -68.77 -0.80 -15.24 16 25 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 26 H 0.37 20.39 7.80 -92.71 -0.72 19.66 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.39 9.61 9.12 -74.06 -0.68 8.93 16 30 H 0.05 2.04 7.39 -2.38 -0.02 2.03 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.41 14.78 6.17 -92.71 -0.57 14.21 16 33 H 0.13 3.62 6.40 -2.91 -0.02 3.60 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.41 8.36 9.06 -74.06 -0.67 7.69 16 Total: -1.00 -74.45 322.09 -1.60 -76.05 By element: Atomic # 1 Polarization: 53.35 SS G_CDS: -1.50 Total: 51.85 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 3.96 Total: 10.32 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -3.66 Total: -122.41 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -2.42 Total: -62.17 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.45 -1.60 -76.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717759997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.744 kcal (2) G-P(sol) polarization free energy of solvation -74.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds