Wall clock time and date at job start Tue Mar 31 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38820 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99613 * 337.76528 * 7 2 1 9 9 N 1.36931 * 119.99908 * 157.76854 * 7 2 1 10 10 C 1.46502 * 120.00148 * 321.42178 * 9 7 2 11 11 C 1.52997 * 109.47175 * 270.00359 * 10 9 7 12 12 N 1.46502 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99798 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00346 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47406 * 179.97438 * 15 13 12 17 17 F 1.39901 * 109.47093 * 59.99737 * 16 15 13 18 18 F 1.39898 * 109.47325 * 179.97438 * 16 15 13 19 19 F 1.39896 * 109.46866 * 299.99886 * 16 15 13 20 20 C 1.46497 * 119.99982 * 141.42374 * 9 7 2 21 21 C 1.52998 * 117.49918 * 3.18785 * 20 9 7 22 22 C 1.53005 * 117.50024 * 294.52749 * 20 9 7 23 23 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46819 * 29.99894 * 10 9 7 25 25 H 1.08995 * 109.47227 * 149.99904 * 10 9 7 26 26 H 1.09007 * 109.47234 * 299.99843 * 11 10 9 27 27 H 1.08995 * 109.47415 * 59.99660 * 11 10 9 28 28 H 0.97001 * 120.00170 * 359.97438 * 12 11 10 29 29 H 1.09007 * 109.46803 * 300.00071 * 15 13 12 30 30 H 1.08995 * 109.47104 * 59.99434 * 15 13 12 31 31 H 1.08998 * 115.55168 * 148.86221 * 20 9 7 32 32 H 1.08993 * 117.49883 * 0.02562 * 21 20 9 33 33 H 1.09008 * 117.49720 * 145.02293 * 21 20 9 34 34 H 1.08998 * 117.49713 * 214.98178 * 22 20 9 35 35 H 1.08994 * 117.49515 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0103 -1.2022 -0.0005 8 1 1.5304 -2.1029 0.3530 9 7 3.3032 -1.2461 -0.4492 10 6 3.7038 -0.4455 -1.6089 11 6 3.5026 -1.2624 -2.8867 12 7 3.9026 -0.4615 -4.0464 13 6 3.8106 -0.9796 -5.2872 14 8 3.3971 -2.1090 -5.4437 15 6 4.2214 -0.1556 -6.4802 16 6 4.0204 -0.9726 -7.7581 17 9 2.6722 -1.3267 -7.8779 18 9 4.4012 -0.2074 -8.8656 19 9 4.8032 -2.1305 -7.6992 20 6 4.2860 -2.0938 0.2303 21 6 3.7895 -2.9624 1.3878 22 6 4.6554 -1.7321 1.6704 23 1 -0.4850 0.8401 0.0004 24 1 3.0945 0.4572 -1.6550 25 1 4.7543 -0.1704 -1.5151 26 1 4.1118 -2.1651 -2.8406 27 1 2.4521 -1.5375 -2.9805 28 1 4.2329 0.4419 -3.9213 29 1 3.6118 0.7469 -6.5258 30 1 5.2719 0.1199 -6.3870 31 1 5.0730 -2.5021 -0.4037 32 1 2.7316 -2.9035 1.6435 33 1 4.2502 -3.9420 1.5156 34 1 5.6853 -1.9028 1.9838 35 1 4.1675 -0.8632 2.1119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731871705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:47 Heat of formation + Delta-G solvation = -140.007239 kcal Electronic energy + Delta-G solvation = -22196.595463 eV Core-core repulsion = 18202.478728 eV Total energy + Delta-G solvation = -3994.116735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.14318 -47.69479 -47.54222 -39.62088 -37.43627 -35.10695 -33.37181 -32.15653 -31.27520 -27.94932 -24.67221 -23.92902 -22.36845 -21.46527 -20.69084 -19.73211 -18.81613 -18.60844 -17.67905 -16.90947 -16.16181 -15.84709 -15.76682 -15.38012 -14.91334 -14.53206 -14.41257 -14.02095 -13.87493 -13.73826 -13.71814 -13.57441 -13.46527 -12.71317 -12.51576 -12.36677 -12.07729 -11.96528 -11.71720 -10.94544 -10.82661 -10.51913 -10.15279 -10.09268 -9.92672 -9.59521 -9.50160 -8.89708 -8.63036 -6.89540 -6.13825 -3.58606 2.45918 2.51931 3.08538 3.13901 3.34395 3.39122 3.58771 3.92487 4.06462 4.36364 4.61239 4.74778 4.83762 4.85290 4.88994 5.14644 5.62743 5.65125 5.71695 5.90788 5.97859 6.06892 6.34632 6.36754 6.46938 6.52761 6.70168 6.85532 7.05099 7.47155 7.90118 8.15509 8.27883 8.82722 9.54423 9.92604 11.00601 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.004311 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.676833 B = 6493.392630 C = 7061.103672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.131 3.869 11 C 0.099 3.901 12 N -0.717 5.717 13 C 0.512 3.488 14 O -0.522 6.522 15 C -0.197 4.197 16 C 0.473 3.527 17 F -0.172 7.172 18 F -0.186 7.186 19 F -0.174 7.174 20 C 0.117 3.883 21 C -0.186 4.186 22 C -0.222 4.222 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.399 0.601 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.521 2.601 -11.065 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.162 4.162 3 Si 0.704 3.296 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.103 0.897 9 N -0.286 5.286 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.368 5.368 13 C 0.295 3.705 14 O -0.398 6.398 15 C -0.239 4.239 16 C 0.418 3.582 17 F -0.153 7.153 18 F -0.167 7.167 19 F -0.155 7.155 20 C 0.009 3.991 21 C -0.224 4.224 22 C -0.262 4.262 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.232 0.768 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.006 1.841 -11.167 15.787 hybrid contribution 0.487 1.452 -0.033 1.531 sum 11.493 3.293 -11.200 16.382 Atomic orbital electron populations 1.69864 1.06006 1.26948 1.50220 1.25521 0.95090 0.97805 0.97737 0.86970 0.80998 0.84658 0.76930 1.21409 1.22689 1.19007 1.18752 0.85699 0.94621 1.41256 0.89728 1.43498 1.07189 1.50720 1.27181 1.21330 0.98151 0.94279 0.85794 1.22366 1.01782 0.94800 0.83642 1.45978 1.66076 1.18679 1.06108 1.19714 0.79350 0.87319 0.84109 1.90833 1.45071 1.18487 1.85433 1.22997 1.08401 1.01237 0.91218 1.19723 0.74684 0.78825 0.84980 1.93236 1.33226 1.92487 1.96378 1.93188 1.91272 1.75546 1.56735 1.93219 1.74540 1.51276 1.96476 1.21189 0.94126 0.97083 0.86706 1.23079 1.01108 0.93528 1.04697 1.23380 0.98451 0.99794 1.04606 0.92473 0.92161 0.93342 0.91762 0.90186 0.76769 0.84474 0.84578 0.88948 0.87788 0.90341 0.90726 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.97 55.49 0.78 -25.21 16 2 C 0.04 1.09 5.30 -17.43 -0.09 1.00 16 3 Si 0.87 20.54 25.08 -169.99 -4.26 16.27 16 4 H -0.29 -6.31 6.69 56.52 0.38 -5.93 16 5 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.28 -7.19 8.96 -15.06 -0.13 -7.33 16 8 H 0.09 2.43 6.86 -52.49 -0.36 2.07 16 9 N -0.57 -12.46 2.39 -165.66 -0.40 -12.86 16 10 C 0.13 2.49 4.66 -4.04 -0.02 2.47 16 11 C 0.10 1.76 6.00 -4.04 -0.02 1.73 16 12 N -0.72 -9.85 5.56 -60.29 -0.33 -10.19 16 13 C 0.51 7.23 7.60 -10.99 -0.08 7.14 16 14 O -0.52 -9.82 14.83 5.55 0.08 -9.74 16 15 C -0.20 -1.79 5.75 -27.89 -0.16 -1.96 16 16 C 0.47 5.54 2.89 37.16 0.11 5.65 16 17 F -0.17 -2.46 16.40 2.25 0.04 -2.42 16 18 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 19 F -0.17 -2.37 16.40 2.25 0.04 -2.33 16 20 C 0.12 2.23 6.56 -67.93 -0.45 1.79 16 21 C -0.19 -3.42 9.80 -26.69 -0.26 -3.68 16 22 C -0.22 -4.01 10.36 -26.69 -0.28 -4.29 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.06 1.25 3.40 -51.93 -0.18 1.07 16 25 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.40 4.12 8.47 -40.82 -0.35 3.78 16 29 H 0.14 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.10 2.17 6.44 -51.93 -0.33 1.84 16 33 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 307.42 15.07 4.63 4.63 Total: -1.00 -31.79 307.42 -4.96 -36.75 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.18 Total: 4.46 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.39 Total: 2.53 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.04 Total: -48.25 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.26 Total: 16.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.79 -4.96 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731871705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.256 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds