Wall clock time and date at job start Tue Mar 31 2020 01:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38820 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99613 * 337.76528 * 7 2 1 9 9 N 1.36931 * 119.99908 * 157.76854 * 7 2 1 10 10 C 1.46502 * 120.00148 * 321.42178 * 9 7 2 11 11 C 1.52997 * 109.47175 * 270.00359 * 10 9 7 12 12 N 1.46502 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99798 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00346 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47406 * 179.97438 * 15 13 12 17 17 F 1.39901 * 109.47093 * 59.99737 * 16 15 13 18 18 F 1.39898 * 109.47325 * 179.97438 * 16 15 13 19 19 F 1.39896 * 109.46866 * 299.99886 * 16 15 13 20 20 C 1.46497 * 119.99982 * 141.42374 * 9 7 2 21 21 C 1.52998 * 117.49918 * 3.18785 * 20 9 7 22 22 C 1.53005 * 117.50024 * 294.52749 * 20 9 7 23 23 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46819 * 29.99894 * 10 9 7 25 25 H 1.08995 * 109.47227 * 149.99904 * 10 9 7 26 26 H 1.09007 * 109.47234 * 299.99843 * 11 10 9 27 27 H 1.08995 * 109.47415 * 59.99660 * 11 10 9 28 28 H 0.97001 * 120.00170 * 359.97438 * 12 11 10 29 29 H 1.09007 * 109.46803 * 300.00071 * 15 13 12 30 30 H 1.08995 * 109.47104 * 59.99434 * 15 13 12 31 31 H 1.08998 * 115.55168 * 148.86221 * 20 9 7 32 32 H 1.08993 * 117.49883 * 0.02562 * 21 20 9 33 33 H 1.09008 * 117.49720 * 145.02293 * 21 20 9 34 34 H 1.08998 * 117.49713 * 214.98178 * 22 20 9 35 35 H 1.08994 * 117.49515 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0103 -1.2022 -0.0005 8 1 1.5304 -2.1029 0.3530 9 7 3.3032 -1.2461 -0.4492 10 6 3.7038 -0.4455 -1.6089 11 6 3.5026 -1.2624 -2.8867 12 7 3.9026 -0.4615 -4.0464 13 6 3.8106 -0.9796 -5.2872 14 8 3.3971 -2.1090 -5.4437 15 6 4.2214 -0.1556 -6.4802 16 6 4.0204 -0.9726 -7.7581 17 9 2.6722 -1.3267 -7.8779 18 9 4.4012 -0.2074 -8.8656 19 9 4.8032 -2.1305 -7.6992 20 6 4.2860 -2.0938 0.2303 21 6 3.7895 -2.9624 1.3878 22 6 4.6554 -1.7321 1.6704 23 1 -0.4850 0.8401 0.0004 24 1 3.0945 0.4572 -1.6550 25 1 4.7543 -0.1704 -1.5151 26 1 4.1118 -2.1651 -2.8406 27 1 2.4521 -1.5375 -2.9805 28 1 4.2329 0.4419 -3.9213 29 1 3.6118 0.7469 -6.5258 30 1 5.2719 0.1199 -6.3870 31 1 5.0730 -2.5021 -0.4037 32 1 2.7316 -2.9035 1.6435 33 1 4.2502 -3.9420 1.5156 34 1 5.6853 -1.9028 1.9838 35 1 4.1675 -0.8632 2.1119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731871705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:46 Heat of formation + Delta-G solvation = -162.702912 kcal Electronic energy + Delta-G solvation = -22197.579621 eV Core-core repulsion = 18202.478728 eV Total energy + Delta-G solvation = -3995.100894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.06866 -48.58843 -48.54102 -40.81093 -39.02474 -36.47188 -35.01047 -33.51752 -32.69568 -29.47458 -26.33804 -25.16341 -23.75594 -22.92982 -21.83643 -21.40786 -19.79614 -19.54176 -18.73920 -18.35880 -17.58125 -17.42800 -17.18658 -16.64624 -16.25847 -15.58516 -15.46968 -15.37170 -15.01159 -14.92127 -14.72731 -14.70854 -14.63803 -14.40201 -14.13739 -13.63146 -13.50090 -13.19773 -12.96974 -12.67045 -12.50887 -12.09509 -11.82896 -11.73713 -11.32470 -11.23758 -10.96360 -10.63636 -10.15856 -8.69045 -8.20933 -5.63195 1.27058 1.43910 1.44755 1.54945 1.55797 2.07384 2.40554 2.73460 2.96573 3.07983 3.11435 3.32250 3.33815 3.79801 4.11431 4.18397 4.19852 4.27852 4.28955 4.39080 4.48823 4.58638 4.91567 4.95979 5.03640 5.10443 5.29472 5.38442 5.54689 5.93016 6.20255 6.40827 6.95724 7.11788 7.59283 7.98169 8.98112 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.004311 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.676833 B = 6493.392630 C = 7061.103672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.021 4.021 3 Si 0.943 3.057 4 H -0.258 1.258 5 H -0.314 1.314 6 H -0.252 1.252 7 C -0.260 4.260 8 H 0.039 0.961 9 N -0.582 5.582 10 C 0.131 3.869 11 C 0.116 3.884 12 N -0.705 5.705 13 C 0.507 3.493 14 O -0.577 6.577 15 C -0.180 4.180 16 C 0.465 3.535 17 F -0.193 7.193 18 F -0.177 7.177 19 F -0.189 7.189 20 C 0.103 3.897 21 C -0.193 4.193 22 C -0.205 4.205 23 H 0.263 0.737 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.420 0.580 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.084 4.394 -11.957 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.218 4.218 3 Si 0.771 3.229 4 H -0.184 1.184 5 H -0.243 1.243 6 H -0.175 1.175 7 C -0.390 4.390 8 H 0.057 0.943 9 N -0.302 5.302 10 C 0.005 3.995 11 C -0.010 4.010 12 N -0.358 5.358 13 C 0.293 3.707 14 O -0.456 6.456 15 C -0.219 4.219 16 C 0.411 3.589 17 F -0.175 7.175 18 F -0.158 7.158 19 F -0.170 7.170 20 C -0.004 4.004 21 C -0.231 4.231 22 C -0.245 4.245 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.257 0.743 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.635 3.663 -12.079 19.326 hybrid contribution -0.620 0.752 0.228 1.001 sum 14.015 4.415 -11.852 18.878 Atomic orbital electron populations 1.70020 1.08041 1.27619 1.53390 1.26195 0.95655 1.01643 0.98264 0.85858 0.79561 0.79401 0.78126 1.18422 1.24319 1.17545 1.18527 0.87550 0.93076 1.39824 0.94307 1.43600 1.06275 1.51590 1.28729 1.21412 1.00011 0.93163 0.84895 1.21834 0.98951 0.95266 0.84959 1.45730 1.65715 1.19299 1.05080 1.20528 0.77939 0.87025 0.85176 1.90821 1.47354 1.21216 1.86254 1.23040 1.11833 1.00378 0.86696 1.20161 0.73596 0.78757 0.86410 1.93198 1.34925 1.92767 1.96576 1.93205 1.91052 1.75052 1.56498 1.93190 1.74783 1.52461 1.96613 1.21544 0.94352 0.96954 0.87541 1.23053 0.99476 0.95562 1.04980 1.23350 0.99931 0.98182 1.03072 0.92784 0.93591 0.89191 0.91847 0.94982 0.74252 0.80937 0.79988 0.85515 0.91590 0.87169 0.86856 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 13.97 21.65 0.30 -57.56 16 2 C -0.02 -1.16 5.30 84.86 0.45 -0.71 16 3 Si 0.94 42.26 25.08 68.60 1.72 43.98 16 4 H -0.26 -10.28 6.69 99.48 0.67 -9.61 16 5 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 6 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.26 -14.07 8.96 84.04 0.75 -13.32 16 8 H 0.04 2.41 6.86 -2.91 -0.02 2.39 16 9 N -0.58 -25.11 2.39 -678.04 -1.62 -26.73 16 10 C 0.13 4.64 4.66 86.38 0.40 5.04 16 11 C 0.12 3.99 6.00 86.38 0.52 4.51 16 12 N -0.71 -17.32 5.56 -463.05 -2.57 -19.90 16 13 C 0.51 13.16 7.60 87.66 0.67 13.83 16 14 O -0.58 -21.56 14.83 -3.05 -0.05 -21.61 16 15 C -0.18 -2.53 5.75 29.85 0.17 -2.36 16 16 C 0.47 9.89 2.89 71.98 0.21 10.10 16 17 F -0.19 -5.39 16.40 44.97 0.74 -4.65 16 18 F -0.18 -3.21 17.32 44.97 0.78 -2.44 16 19 F -0.19 -4.92 16.40 44.97 0.74 -4.18 16 20 C 0.10 3.70 6.56 44.99 0.30 4.00 16 21 C -0.19 -6.92 9.80 30.62 0.30 -6.62 16 22 C -0.21 -6.89 10.36 30.62 0.32 -6.57 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.05 1.78 3.40 -2.39 -0.01 1.77 16 25 H 0.09 2.49 8.07 -2.39 -0.02 2.47 16 26 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.42 6.74 8.47 -92.71 -0.79 5.95 16 29 H 0.17 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.18 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.13 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 33 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 34 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.28 307.42 4.42 -70.86 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.30 Total: 14.33 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.08 Total: 7.89 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.89 Total: -104.19 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 9 Polarization: -13.52 SS G_CDS: 2.25 Total: -11.27 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.72 Total: 43.98 kcal Total: -75.28 4.42 -70.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731871705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.841 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds