Wall clock time and date at job start Tue Mar 31 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.64709 * 2 1 4 4 C 1.35129 * 107.11563 * 179.83725 * 3 2 1 5 5 O 1.33936 * 108.76602 * 0.43339 * 4 3 2 6 6 C 1.34910 * 109.38275 * 359.72179 * 5 4 3 7 7 C 1.46655 * 125.98405 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99812 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00467 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00666 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47593 * 179.97438 * 10 9 7 12 12 O 1.42905 * 112.94367 * 53.40401 * 11 10 9 13 13 C 1.53940 * 113.74259 * 281.67705 * 11 10 9 14 14 N 1.47580 * 86.11669 * 222.04375 * 13 11 10 15 15 C 1.36934 * 134.49674 * 204.63517 * 14 13 11 16 16 H 1.08003 * 120.00402 * 173.48048 * 15 14 13 17 17 C 1.38811 * 119.99747 * 353.48380 * 15 14 13 18 18 N 1.31622 * 120.00189 * 5.06605 * 17 15 14 19 19 Si 1.86805 * 120.00083 * 185.06460 * 17 15 14 20 20 H 1.48495 * 109.47421 * 94.98840 * 19 17 15 21 21 H 1.48503 * 109.46875 * 214.99070 * 19 17 15 22 22 H 1.48499 * 109.46772 * 334.98643 * 19 17 15 23 23 C 1.47589 * 91.01364 * 24.63995 * 14 13 11 24 24 H 1.09008 * 109.46627 * 269.69002 * 1 2 3 25 25 H 1.08996 * 109.47412 * 149.69185 * 1 2 3 26 26 H 1.08993 * 109.46889 * 29.68119 * 1 2 3 27 27 H 1.08000 * 126.44218 * 359.97438 * 3 2 1 28 28 H 1.08007 * 125.61960 * 180.11558 * 4 3 2 29 29 H 0.97001 * 119.99592 * 359.97438 * 9 7 6 30 30 H 1.09008 * 109.46357 * 300.00144 * 10 9 7 31 31 H 1.09000 * 109.47105 * 59.99416 * 10 9 7 32 32 H 0.96699 * 114.00029 * 309.66813 * 12 11 10 33 33 H 1.09000 * 113.76775 * 336.34286 * 13 11 10 34 34 H 1.08996 * 113.77249 * 107.74244 * 13 11 10 35 35 H 0.96999 * 120.00304 * 180.02562 * 18 17 15 36 36 H 1.08997 * 113.76281 * 221.06123 * 23 14 13 37 37 H 1.08995 * 113.77119 * 89.65846 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0037 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8843 -2.4952 -0.0142 8 8 0.6968 -2.7613 -0.0160 9 7 2.7971 -3.4868 -0.0197 10 6 2.3599 -4.8850 -0.0285 11 6 3.5843 -5.8023 -0.0340 12 8 4.5004 -5.5150 1.0245 13 6 4.2516 -5.9371 -1.4148 14 7 4.3768 -7.3740 -1.1025 15 6 5.2131 -8.3766 -1.5157 16 1 5.1627 -9.3489 -1.0482 17 6 6.1256 -8.1431 -2.5353 18 7 6.2570 -6.9333 -3.0367 19 14 7.1673 -9.5460 -3.1958 20 1 6.5125 -10.1267 -4.3954 21 1 8.5113 -9.0334 -3.5648 22 1 7.3064 -10.5931 -2.1520 23 6 3.2387 -7.2966 -0.1661 24 1 -0.3633 -0.0056 1.0278 25 1 -0.3634 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5088 27 1 2.0307 2.1595 -0.0004 28 1 4.5047 1.2916 0.0064 29 1 3.7436 -3.2746 -0.0187 30 1 1.7605 -5.0837 0.8600 31 1 1.7614 -5.0730 -0.9199 32 1 4.7429 -4.5813 1.0922 33 1 3.5823 -5.7254 -2.2486 34 1 5.2076 -5.4195 -1.4931 35 1 6.8944 -6.7702 -3.7495 36 1 3.3863 -7.8645 0.7525 37 1 2.2719 -7.4842 -0.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733495880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:08 Heat of formation + Delta-G solvation = -8.755736 kcal Electronic energy + Delta-G solvation = -21698.474906 eV Core-core repulsion = 18251.906404 eV Total energy + Delta-G solvation = -3446.568503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.86065 -39.74223 -38.54058 -35.07311 -34.43491 -33.80341 -32.00836 -30.74024 -28.85582 -27.58935 -25.90764 -25.00296 -23.05781 -21.93407 -21.20348 -20.17237 -19.34133 -18.46263 -16.84381 -16.55736 -16.42007 -16.09621 -15.56027 -15.05428 -14.74408 -14.16867 -13.98994 -13.73470 -13.45224 -13.29343 -13.17514 -13.03264 -12.72984 -12.66373 -12.26916 -11.96026 -11.78499 -11.08392 -10.95966 -10.75500 -10.46852 -10.22252 -9.90105 -9.81114 -9.53300 -9.30716 -9.05883 -8.82117 -8.70156 -6.89741 -5.79295 -3.10259 0.92613 2.15414 2.56249 3.10812 3.17880 3.39636 3.44607 3.46703 4.43003 4.47784 4.52191 4.58657 4.74188 4.99813 5.18974 5.26070 5.28011 5.33950 5.54692 5.57079 5.58939 5.71882 5.84724 5.93535 6.01636 6.19617 6.28173 6.37422 6.50490 6.54978 6.68274 7.01321 7.13273 7.40526 7.50378 7.94786 8.02174 8.12995 9.02670 9.68963 10.55764 11.38645 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.003695 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.088724 B = 7575.474307 C = 8055.150428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.090 4.090 3 C -0.228 4.228 4 C -0.003 4.003 5 O -0.161 6.161 6 C -0.083 4.083 7 C 0.603 3.397 8 O -0.521 6.521 9 N -0.713 5.713 10 C 0.102 3.898 11 C 0.062 3.938 12 O -0.526 6.526 13 C 0.147 3.853 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.136 3.864 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.210 0.790 29 H 0.404 0.596 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.362 0.638 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 16.750 6.836 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.247 4.247 4 C -0.073 4.073 5 O -0.057 6.057 6 C -0.135 4.135 7 C 0.389 3.611 8 O -0.399 6.399 9 N -0.364 5.364 10 C -0.022 4.022 11 C 0.019 3.981 12 O -0.330 6.330 13 C 0.021 3.979 14 N -0.328 5.328 15 C -0.348 4.348 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.010 3.990 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.227 0.773 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.052 15.482 6.739 18.706 hybrid contribution 1.111 0.327 -0.660 1.333 sum -6.941 15.808 6.079 18.304 Atomic orbital electron populations 1.20424 0.88246 1.03594 1.02846 1.20641 0.97675 0.90995 0.99978 1.21737 0.92478 1.00110 1.10346 1.24373 0.99960 0.80651 1.02323 1.84084 1.28304 1.22698 1.70564 1.21915 0.81525 0.94874 1.15151 1.16495 0.85758 0.81753 0.77058 1.90842 1.15665 1.82357 1.51062 1.45850 1.09945 1.06548 1.74032 1.22149 0.98211 0.78695 1.03160 1.23801 0.87803 0.95698 0.90770 1.86614 1.64696 1.29517 1.52162 1.22843 0.98491 0.86377 0.90203 1.45639 1.31276 1.06371 1.49483 1.19009 1.11064 0.91013 1.13667 0.90044 1.24805 1.00053 0.96980 0.98521 1.69820 1.38551 1.18989 1.29468 0.86095 0.79426 0.81260 0.78993 1.21612 1.21704 1.20500 1.22560 0.92268 0.89845 0.94355 0.90867 0.89397 0.91574 0.82748 0.77342 0.76112 0.90707 0.89872 0.79157 0.94590 0.90790 0.93656 0.92618 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.82 36.01 0.35 -0.63 16 2 C -0.09 -1.05 6.20 -104.43 -0.65 -1.69 16 3 C -0.23 -2.06 10.83 -39.89 -0.43 -2.49 16 4 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 5 O -0.16 -1.85 10.40 4.99 0.05 -1.80 16 6 C -0.08 -1.08 7.13 -36.80 -0.26 -1.34 16 7 C 0.60 8.87 7.79 -12.86 -0.10 8.77 16 8 O -0.52 -8.76 14.74 5.19 0.08 -8.68 16 9 N -0.71 -9.89 5.33 -61.62 -0.33 -10.22 16 10 C 0.10 1.56 5.28 -4.04 -0.02 1.54 16 11 C 0.06 1.14 1.52 -89.70 -0.14 1.01 16 12 O -0.53 -9.65 13.51 -35.23 -0.48 -10.13 16 13 C 0.15 3.38 6.83 -2.98 -0.02 3.36 16 14 N -0.60 -15.59 3.70 -177.82 -0.66 -16.25 16 15 C -0.22 -6.27 10.70 -15.06 -0.16 -6.44 16 16 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -27.38 11.51 55.49 0.64 -26.74 16 19 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.14 2.81 8.34 -2.97 -0.02 2.79 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.09 1.07 6.44 -51.93 -0.33 0.74 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.40 5.05 7.06 -40.82 -0.29 4.77 16 30 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 31 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 32 H 0.36 5.07 7.61 45.56 0.35 5.42 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.07 1.88 7.35 -51.93 -0.38 1.50 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -34.49 319.52 -6.09 -40.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.00 Total: 6.23 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.19 Total: 4.90 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.35 Total: -53.21 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.35 Total: -20.61 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.49 -6.09 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.826 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds