Wall clock time and date at job start Tue Mar 31 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.64709 * 2 1 4 4 C 1.35129 * 107.11563 * 179.83725 * 3 2 1 5 5 O 1.33936 * 108.76602 * 0.43339 * 4 3 2 6 6 C 1.34910 * 109.38275 * 359.72179 * 5 4 3 7 7 C 1.46655 * 125.98405 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99812 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00467 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00666 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47593 * 179.97438 * 10 9 7 12 12 O 1.42905 * 112.94367 * 53.40401 * 11 10 9 13 13 C 1.53940 * 113.74259 * 281.67705 * 11 10 9 14 14 N 1.47580 * 86.11669 * 222.04375 * 13 11 10 15 15 C 1.36934 * 134.49674 * 204.63517 * 14 13 11 16 16 H 1.08003 * 120.00402 * 173.48048 * 15 14 13 17 17 C 1.38811 * 119.99747 * 353.48380 * 15 14 13 18 18 N 1.31622 * 120.00189 * 5.06605 * 17 15 14 19 19 Si 1.86805 * 120.00083 * 185.06460 * 17 15 14 20 20 H 1.48495 * 109.47421 * 94.98840 * 19 17 15 21 21 H 1.48503 * 109.46875 * 214.99070 * 19 17 15 22 22 H 1.48499 * 109.46772 * 334.98643 * 19 17 15 23 23 C 1.47589 * 91.01364 * 24.63995 * 14 13 11 24 24 H 1.09008 * 109.46627 * 269.69002 * 1 2 3 25 25 H 1.08996 * 109.47412 * 149.69185 * 1 2 3 26 26 H 1.08993 * 109.46889 * 29.68119 * 1 2 3 27 27 H 1.08000 * 126.44218 * 359.97438 * 3 2 1 28 28 H 1.08007 * 125.61960 * 180.11558 * 4 3 2 29 29 H 0.97001 * 119.99592 * 359.97438 * 9 7 6 30 30 H 1.09008 * 109.46357 * 300.00144 * 10 9 7 31 31 H 1.09000 * 109.47105 * 59.99416 * 10 9 7 32 32 H 0.96699 * 114.00029 * 309.66813 * 12 11 10 33 33 H 1.09000 * 113.76775 * 336.34286 * 13 11 10 34 34 H 1.08996 * 113.77249 * 107.74244 * 13 11 10 35 35 H 0.96999 * 120.00304 * 180.02562 * 18 17 15 36 36 H 1.08997 * 113.76281 * 221.06123 * 23 14 13 37 37 H 1.08995 * 113.77119 * 89.65846 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0037 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8843 -2.4952 -0.0142 8 8 0.6968 -2.7613 -0.0160 9 7 2.7971 -3.4868 -0.0197 10 6 2.3599 -4.8850 -0.0285 11 6 3.5843 -5.8023 -0.0340 12 8 4.5004 -5.5150 1.0245 13 6 4.2516 -5.9371 -1.4148 14 7 4.3768 -7.3740 -1.1025 15 6 5.2131 -8.3766 -1.5157 16 1 5.1627 -9.3489 -1.0482 17 6 6.1256 -8.1431 -2.5353 18 7 6.2570 -6.9333 -3.0367 19 14 7.1673 -9.5460 -3.1958 20 1 6.5125 -10.1267 -4.3954 21 1 8.5113 -9.0334 -3.5648 22 1 7.3064 -10.5931 -2.1520 23 6 3.2387 -7.2966 -0.1661 24 1 -0.3633 -0.0056 1.0278 25 1 -0.3634 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5088 27 1 2.0307 2.1595 -0.0004 28 1 4.5047 1.2916 0.0064 29 1 3.7436 -3.2746 -0.0187 30 1 1.7605 -5.0837 0.8600 31 1 1.7614 -5.0730 -0.9199 32 1 4.7429 -4.5813 1.0922 33 1 3.5823 -5.7254 -2.2486 34 1 5.2076 -5.4195 -1.4931 35 1 6.8944 -6.7702 -3.7495 36 1 3.3863 -7.8645 0.7525 37 1 2.2719 -7.4842 -0.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733495880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:07 Heat of formation + Delta-G solvation = -35.954758 kcal Electronic energy + Delta-G solvation = -21699.654345 eV Core-core repulsion = 18251.906404 eV Total energy + Delta-G solvation = -3447.747941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.65942 -41.08883 -39.97446 -36.58136 -35.61217 -34.83231 -34.03468 -31.61948 -30.29160 -28.80028 -27.43827 -26.74903 -24.32492 -23.32257 -22.14075 -21.27925 -20.86908 -19.48618 -18.75602 -17.66644 -17.44647 -17.26532 -17.04192 -16.39989 -16.12911 -15.75934 -15.56285 -15.03705 -14.72089 -14.54831 -14.28433 -14.02933 -13.90861 -13.85994 -13.50688 -13.42557 -12.98895 -12.86697 -12.76553 -12.58481 -12.22213 -11.80333 -11.50870 -11.17431 -10.97854 -10.76586 -10.65217 -10.32489 -9.56032 -8.94418 -7.94022 -5.26124 0.03178 1.42870 1.44719 1.46689 1.55651 1.68117 2.06740 2.16310 2.45525 3.02127 3.24779 3.32993 3.55455 3.75039 3.83845 3.85087 3.96835 4.34259 4.54933 4.64358 4.66432 4.70420 4.76681 4.78863 4.80695 4.93372 5.11977 5.13691 5.16358 5.25330 5.28506 5.47044 5.49022 5.86692 5.89681 6.34055 6.76257 6.89368 6.95147 7.57346 8.51368 9.23547 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.003695 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.088724 B = 7575.474307 C = 8055.150428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.093 4.093 3 C -0.235 4.235 4 C 0.013 3.987 5 O -0.174 6.174 6 C -0.121 4.121 7 C 0.602 3.398 8 O -0.550 6.550 9 N -0.709 5.709 10 C 0.118 3.882 11 C 0.096 3.904 12 O -0.540 6.540 13 C 0.146 3.854 14 N -0.636 5.636 15 C -0.236 4.236 16 H 0.083 0.917 17 C -0.065 4.065 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.268 1.268 23 C 0.131 3.869 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.254 0.746 29 H 0.410 0.590 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.382 0.618 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.249 0.751 36 H 0.060 0.940 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 18.143 7.600 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.254 4.254 4 C -0.056 4.056 5 O -0.070 6.070 6 C -0.173 4.173 7 C 0.391 3.609 8 O -0.430 6.430 9 N -0.361 5.361 10 C -0.007 4.007 11 C 0.053 3.947 12 O -0.346 6.346 13 C 0.020 3.980 14 N -0.362 5.362 15 C -0.364 4.364 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.192 1.192 23 C 0.006 3.994 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.202 0.798 28 H 0.269 0.731 29 H 0.246 0.754 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.231 0.769 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.101 16.887 7.535 20.188 hybrid contribution 1.122 0.016 -0.848 1.407 sum -6.978 16.902 6.687 19.471 Atomic orbital electron populations 1.20440 0.87830 1.03622 1.03188 1.21041 0.98347 0.91666 0.98512 1.22104 0.92161 1.00774 1.10346 1.25353 1.01542 0.79625 0.99111 1.84072 1.27568 1.24354 1.70964 1.21624 0.82614 0.94253 1.18769 1.16710 0.85364 0.82571 0.76293 1.90816 1.16670 1.83058 1.52498 1.45742 1.10309 1.05888 1.74122 1.21854 0.96304 0.78910 1.03624 1.23197 0.88115 0.95347 0.88009 1.86563 1.64895 1.31608 1.51525 1.22776 0.97310 0.85169 0.92764 1.46019 1.32742 1.07002 1.50419 1.19399 1.11527 0.91814 1.13657 0.89899 1.25641 1.01708 0.99362 0.99118 1.69998 1.39386 1.20767 1.29925 0.85050 0.77365 0.78519 0.78354 1.21343 1.21962 1.19237 1.22801 0.91720 0.91350 0.93537 0.90281 0.91672 0.89212 0.79843 0.73053 0.75385 0.89387 0.90250 0.76915 0.95503 0.93818 0.94206 0.92201 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.82 71.24 0.70 -1.16 16 2 C -0.09 -2.02 6.20 -19.74 -0.12 -2.15 16 3 C -0.24 -3.55 10.83 22.07 0.24 -3.31 16 4 C 0.01 0.18 12.08 67.10 0.81 0.99 16 5 O -0.17 -3.73 10.40 -5.04 -0.05 -3.78 16 6 C -0.12 -3.08 7.13 24.07 0.17 -2.91 16 7 C 0.60 17.68 7.79 86.44 0.67 18.35 16 8 O -0.55 -18.64 14.74 -4.34 -0.06 -18.70 16 9 N -0.71 -19.44 5.33 -467.10 -2.49 -21.93 16 10 C 0.12 3.51 5.28 86.38 0.46 3.97 16 11 C 0.10 3.49 1.52 -10.14 -0.02 3.48 16 12 O -0.54 -19.33 13.51 -148.98 -2.01 -21.34 16 13 C 0.15 6.84 6.83 86.48 0.59 7.43 16 14 N -0.64 -33.26 3.70 -720.33 -2.66 -35.92 16 15 C -0.24 -13.58 10.70 84.03 0.90 -12.68 16 16 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.95 -57.90 11.51 21.65 0.25 -57.65 16 19 Si 0.98 46.36 29.56 68.60 2.03 48.39 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.13 5.33 8.34 86.48 0.72 6.05 16 24 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.06 1.60 6.44 -2.39 -0.02 1.58 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 29 H 0.41 10.13 7.06 -92.71 -0.65 9.48 16 30 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 32 H 0.38 10.31 7.61 -74.06 -0.56 9.74 16 33 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 34 H 0.04 2.30 7.35 -2.39 -0.02 2.28 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.69 8.10 -2.39 -0.02 2.68 16 Total: -1.00 -75.82 319.52 0.48 -75.35 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.11 Total: 20.85 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.59 Total: 14.75 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.90 Total: -115.50 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -2.13 Total: -43.83 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -75.82 0.48 -75.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733495880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.390 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds