Wall clock time and date at job start Tue Mar 31 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47153 * 269.99783 * 3 2 1 5 5 H 1.48496 * 109.47170 * 29.99884 * 3 2 1 6 6 H 1.48500 * 109.47338 * 150.00266 * 3 2 1 7 7 C 1.38810 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00563 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00415 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.46977 * 35.00338 * 10 9 7 12 12 C 1.53001 * 109.47195 * 275.00221 * 10 9 7 13 13 O 1.42901 * 109.47253 * 294.99584 * 12 10 9 14 14 C 1.52999 * 109.47235 * 155.00012 * 10 9 7 15 15 N 1.46492 * 109.47328 * 305.00170 * 14 10 9 16 16 C 1.34781 * 120.00439 * 180.02562 * 15 14 10 17 17 O 1.21783 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.41548 * 120.00537 * 179.72590 * 16 15 14 19 19 C 1.35624 * 120.00501 * 180.27528 * 18 16 15 20 20 C 1.41597 * 120.00286 * 180.02562 * 19 18 16 21 21 C 1.37955 * 126.10392 * 179.97438 * 20 19 18 22 22 C 1.40317 * 106.52521 * 179.97438 * 21 20 19 23 23 C 1.35145 * 107.21019 * 359.97438 * 22 21 20 24 24 O 1.34027 * 109.03416 * 359.77220 * 23 22 21 25 25 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99560 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47256 * 55.00228 * 12 10 9 28 28 H 1.09003 * 109.46780 * 174.99642 * 12 10 9 29 29 H 0.96695 * 113.99709 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46941 * 184.99961 * 14 10 9 31 31 H 1.08998 * 109.47458 * 65.00729 * 14 10 9 32 32 H 0.97000 * 120.00247 * 359.97438 * 15 14 10 33 33 H 1.08002 * 119.99488 * 0.26969 * 18 16 15 34 34 H 1.08001 * 119.99481 * 359.97438 * 19 18 16 35 35 H 1.07997 * 126.73361 * 0.02562 * 21 20 19 36 36 H 1.08008 * 126.39322 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.48605 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9693 -3.5507 0.5872 12 6 2.4210 -4.0349 -1.4391 13 8 1.2262 -4.2876 -2.1812 14 6 1.1814 -4.7523 0.6081 15 7 0.7358 -4.3363 1.9402 16 6 -0.0526 -5.1489 2.6714 17 8 -0.3950 -6.2288 2.2245 18 6 -0.4785 -4.7494 3.9609 19 6 -1.2673 -5.5695 4.6989 20 6 -1.6937 -5.1696 5.9886 21 6 -2.4936 -5.8998 6.8430 22 6 -2.6570 -5.1219 7.9993 23 6 -1.9669 -3.9753 7.8106 24 8 -1.3847 -4.0091 6.6039 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9703 -3.2155 -1.9028 28 1 3.0416 -4.9310 -1.4334 29 1 1.3807 -4.5331 -3.1037 30 1 1.7565 -5.6749 0.6890 31 1 0.3134 -4.9201 -0.0295 32 1 1.0088 -3.4764 2.2963 33 1 -0.1751 -3.7916 4.3570 34 1 -1.5708 -6.5272 4.3025 35 1 -2.9113 -6.8785 6.6585 36 1 -3.2278 -5.3894 8.8763 37 1 -1.8928 -3.1642 8.5199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734357225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:37 Heat of formation + Delta-G solvation = -40.235157 kcal Electronic energy + Delta-G solvation = -20960.184082 eV Core-core repulsion = 17512.250529 eV Total energy + Delta-G solvation = -3447.933553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.66517 -39.49235 -37.14613 -34.93772 -34.08754 -33.43575 -33.16795 -31.38199 -29.26695 -28.16932 -25.64829 -23.81926 -23.24874 -22.00265 -20.61894 -20.08851 -19.21363 -17.63838 -17.56878 -16.73230 -16.55782 -16.20115 -15.82930 -14.97946 -14.70406 -14.57457 -14.11662 -13.58111 -13.38093 -13.16217 -13.09392 -12.93478 -12.81999 -12.46760 -12.09833 -11.97186 -11.40817 -10.88413 -10.85377 -10.66430 -10.54525 -10.10187 -10.05738 -9.79733 -9.65802 -9.34813 -8.97767 -8.58020 -8.00973 -7.03421 -5.80974 -3.11526 0.44528 2.02818 2.62667 2.82817 3.39276 3.44470 3.46559 3.68415 3.76643 4.52874 4.64454 4.76423 4.84435 4.94429 5.15010 5.37884 5.45600 5.51368 5.54041 5.58739 5.60259 5.90651 5.91690 5.98926 6.03950 6.07317 6.21031 6.34698 6.40653 6.52730 6.76900 6.93086 6.96031 7.62585 7.99869 8.22073 8.35909 8.62200 9.48143 10.03651 10.40164 11.40565 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.004019 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.056077 B = 6965.948337 C = 8555.233731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.705 5.705 16 C 0.542 3.458 17 O -0.561 6.561 18 C -0.185 4.185 19 C -0.010 4.010 20 C 0.002 3.998 21 C -0.174 4.174 22 C -0.220 4.220 23 C -0.025 4.025 24 O -0.164 6.164 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.364 0.636 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -10.597 11.806 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.007 4.007 15 N -0.355 5.355 16 C 0.332 3.668 17 O -0.444 6.444 18 C -0.206 4.206 19 C -0.030 4.030 20 C -0.048 4.048 21 C -0.193 4.193 22 C -0.239 4.239 23 C -0.094 4.094 24 O -0.059 6.059 25 H 0.066 0.934 26 H 0.224 0.776 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.208 0.792 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.149 0.851 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.094 -10.794 11.931 16.127 hybrid contribution 0.498 1.320 -0.343 1.452 sum -0.596 -9.474 11.589 14.980 Atomic orbital electron populations 1.69679 1.05099 1.25731 1.56745 1.24746 0.95440 0.97644 1.02590 0.86226 0.78640 0.83952 0.77510 1.21765 1.21779 1.20755 1.19218 0.90912 0.84069 1.43785 0.91194 1.42383 1.06085 0.99055 1.88003 1.20598 0.95061 0.87046 0.91912 0.91669 1.23033 0.86495 0.97249 0.95428 1.86573 1.32147 1.91926 1.25669 1.21549 0.99549 0.96832 0.82739 1.45956 1.50007 1.21617 1.17920 1.16956 0.79355 0.84709 0.85826 1.90796 1.57566 1.22695 1.73319 1.22247 1.01226 1.01477 0.95611 1.20609 0.94379 0.99758 0.88251 1.19961 1.03280 0.86083 0.95427 1.22320 1.01612 1.01516 0.93891 1.21758 1.05729 0.95598 1.00787 1.24301 0.98017 1.00835 0.86236 1.84143 1.58471 1.36294 1.26960 0.93420 0.77646 0.93341 0.95519 0.79178 0.92062 0.90511 0.75285 0.85077 0.82304 0.82738 0.83095 0.77843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 9 N -0.71 -17.16 4.51 -53.43 -0.24 -17.40 16 10 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 11 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.12 12.64 -35.23 -0.45 -10.57 16 14 C 0.12 2.15 5.12 -4.05 -0.02 2.13 16 15 N -0.70 -12.51 5.38 -63.24 -0.34 -12.85 16 16 C 0.54 9.56 7.56 -15.00 -0.11 9.45 16 17 O -0.56 -11.31 16.11 5.11 0.08 -11.23 16 18 C -0.18 -2.75 9.41 -39.26 -0.37 -3.12 16 19 C -0.01 -0.13 9.39 -39.24 -0.37 -0.50 16 20 C 0.00 0.02 6.84 -38.41 -0.26 -0.24 16 21 C -0.17 -1.81 10.90 -38.90 -0.42 -2.23 16 22 C -0.22 -1.99 10.87 -39.90 -0.43 -2.42 16 23 C -0.02 -0.23 12.06 29.63 0.36 0.13 16 24 O -0.16 -2.05 10.18 4.66 0.05 -2.00 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.39 10.42 7.80 -40.82 -0.32 10.10 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.36 4.73 9.12 45.56 0.42 5.15 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.08 1.58 7.39 -51.93 -0.38 1.19 16 32 H 0.41 7.29 8.10 -40.82 -0.33 6.95 16 33 H 0.13 1.83 7.72 -52.49 -0.41 1.43 16 34 H 0.16 1.99 7.46 -52.49 -0.39 1.60 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -33.39 330.42 -5.95 -39.34 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -3.92 Total: 19.25 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.82 Total: 0.45 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.14 Total: -56.95 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.32 Total: -23.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.39 -5.95 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734357225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.896 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds