Wall clock time and date at job start Tue Mar 31 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47153 * 269.99783 * 3 2 1 5 5 H 1.48496 * 109.47170 * 29.99884 * 3 2 1 6 6 H 1.48500 * 109.47338 * 150.00266 * 3 2 1 7 7 C 1.38810 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00563 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00415 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.46977 * 35.00338 * 10 9 7 12 12 C 1.53001 * 109.47195 * 275.00221 * 10 9 7 13 13 O 1.42901 * 109.47253 * 294.99584 * 12 10 9 14 14 C 1.52999 * 109.47235 * 155.00012 * 10 9 7 15 15 N 1.46492 * 109.47328 * 305.00170 * 14 10 9 16 16 C 1.34781 * 120.00439 * 180.02562 * 15 14 10 17 17 O 1.21783 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.41548 * 120.00537 * 179.72590 * 16 15 14 19 19 C 1.35624 * 120.00501 * 180.27528 * 18 16 15 20 20 C 1.41597 * 120.00286 * 180.02562 * 19 18 16 21 21 C 1.37955 * 126.10392 * 179.97438 * 20 19 18 22 22 C 1.40317 * 106.52521 * 179.97438 * 21 20 19 23 23 C 1.35145 * 107.21019 * 359.97438 * 22 21 20 24 24 O 1.34027 * 109.03416 * 359.77220 * 23 22 21 25 25 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99560 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47256 * 55.00228 * 12 10 9 28 28 H 1.09003 * 109.46780 * 174.99642 * 12 10 9 29 29 H 0.96695 * 113.99709 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46941 * 184.99961 * 14 10 9 31 31 H 1.08998 * 109.47458 * 65.00729 * 14 10 9 32 32 H 0.97000 * 120.00247 * 359.97438 * 15 14 10 33 33 H 1.08002 * 119.99488 * 0.26969 * 18 16 15 34 34 H 1.08001 * 119.99481 * 359.97438 * 19 18 16 35 35 H 1.07997 * 126.73361 * 0.02562 * 21 20 19 36 36 H 1.08008 * 126.39322 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.48605 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9693 -3.5507 0.5872 12 6 2.4210 -4.0349 -1.4391 13 8 1.2262 -4.2876 -2.1812 14 6 1.1814 -4.7523 0.6081 15 7 0.7358 -4.3363 1.9402 16 6 -0.0526 -5.1489 2.6714 17 8 -0.3950 -6.2288 2.2245 18 6 -0.4785 -4.7494 3.9609 19 6 -1.2673 -5.5695 4.6989 20 6 -1.6937 -5.1696 5.9886 21 6 -2.4936 -5.8998 6.8430 22 6 -2.6570 -5.1219 7.9993 23 6 -1.9669 -3.9753 7.8106 24 8 -1.3847 -4.0091 6.6039 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9703 -3.2155 -1.9028 28 1 3.0416 -4.9310 -1.4334 29 1 1.3807 -4.5331 -3.1037 30 1 1.7565 -5.6749 0.6890 31 1 0.3134 -4.9201 -0.0295 32 1 1.0088 -3.4764 2.2963 33 1 -0.1751 -3.7916 4.3570 34 1 -1.5708 -6.5272 4.3025 35 1 -2.9113 -6.8785 6.6585 36 1 -3.2278 -5.3894 8.8763 37 1 -1.8928 -3.1642 8.5199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734357225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:37 Heat of formation + Delta-G solvation = -66.763751 kcal Electronic energy + Delta-G solvation = -20961.334448 eV Core-core repulsion = 17512.250529 eV Total energy + Delta-G solvation = -3449.083919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.49535 -40.87684 -38.65388 -36.41982 -35.29425 -35.06711 -33.98937 -33.14913 -30.54407 -29.63202 -26.93738 -25.67943 -24.49763 -22.82186 -21.68399 -21.60433 -20.40962 -19.38798 -18.62067 -18.14555 -17.89469 -17.21016 -17.07041 -16.54503 -16.14937 -15.75801 -15.64820 -15.25681 -14.90054 -14.58383 -14.37274 -13.90147 -13.70573 -13.65337 -13.49560 -13.10642 -13.03044 -12.73622 -12.66368 -12.23944 -11.88849 -11.73936 -11.68573 -11.13936 -10.93044 -10.84204 -10.71632 -10.01972 -9.00982 -8.94431 -7.90038 -5.19644 -0.57758 1.17320 1.49931 1.50733 1.59045 1.72681 2.04947 2.37590 2.47713 2.58176 3.42411 3.61859 3.75011 3.90749 3.98751 4.03407 4.06920 4.16049 4.31318 4.44984 4.56574 4.62081 4.68537 4.85116 4.90367 4.99850 5.03715 5.09845 5.21313 5.25058 5.51819 5.56001 5.56460 6.10682 6.28599 6.60324 7.07632 7.23952 7.36566 8.09000 8.34502 9.32916 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.004019 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.056077 B = 6965.948337 C = 8555.233731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.160 3.840 11 H 0.079 0.921 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.708 5.708 16 C 0.545 3.455 17 O -0.594 6.594 18 C -0.225 4.225 19 C 0.025 3.975 20 C -0.047 4.047 21 C -0.154 4.154 22 C -0.228 4.228 23 C -0.015 4.015 24 O -0.187 6.187 25 H 0.248 0.752 26 H 0.372 0.628 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.385 0.615 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.410 0.590 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -11.267 13.580 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.051 3.949 11 H 0.097 0.903 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.004 3.996 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.479 6.479 18 C -0.245 4.245 19 C 0.005 3.995 20 C -0.095 4.095 21 C -0.173 4.173 22 C -0.247 4.247 23 C -0.083 4.083 24 O -0.083 6.083 25 H 0.057 0.943 26 H 0.204 0.796 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.246 0.754 33 H 0.151 0.849 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.199 0.801 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.440 -11.505 13.687 17.886 hybrid contribution 0.225 1.389 -0.700 1.572 sum -0.215 -10.116 12.987 16.463 Atomic orbital electron populations 1.69850 1.06732 1.25794 1.59421 1.25503 0.96139 1.00906 1.03857 0.85195 0.77861 0.79878 0.77095 1.22042 1.22735 1.19017 1.19635 0.91519 0.84854 1.40953 0.90012 1.42494 1.05376 1.00272 1.88201 1.20859 0.95090 0.85310 0.93614 0.90299 1.22873 0.86532 0.98638 0.93575 1.86527 1.32874 1.92098 1.27574 1.21386 0.98462 0.97172 0.82537 1.45949 1.50351 1.21625 1.17772 1.17291 0.78538 0.84061 0.86453 1.90759 1.58975 1.23962 1.74251 1.21986 1.04689 1.02695 0.95167 1.20738 0.91525 0.98977 0.88239 1.19984 1.06223 0.87359 0.95977 1.22794 0.99079 1.01906 0.93493 1.22199 1.05993 0.95159 1.01335 1.25240 0.95985 1.01825 0.85293 1.84138 1.59313 1.36567 1.28274 0.94286 0.79634 0.94464 0.91527 0.76669 0.90296 0.93128 0.75410 0.84907 0.81875 0.80598 0.80060 0.74244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.24 -12.53 9.93 84.03 0.83 -11.70 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.72 -35.14 4.51 -322.95 -1.46 -36.59 16 10 C 0.16 6.07 2.84 44.99 0.13 6.20 16 11 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 12 C 0.06 2.16 6.86 71.98 0.49 2.65 16 13 O -0.58 -20.69 12.64 -148.98 -1.88 -22.57 16 14 C 0.13 4.73 5.12 86.38 0.44 5.18 16 15 N -0.71 -25.82 5.38 -472.18 -2.54 -28.35 16 16 C 0.54 19.88 7.56 85.06 0.64 20.53 16 17 O -0.59 -24.58 16.11 -4.61 -0.07 -24.66 16 18 C -0.22 -6.93 9.41 22.48 0.21 -6.72 16 19 C 0.03 0.67 9.39 22.49 0.21 0.88 16 20 C -0.05 -1.13 6.84 23.03 0.16 -0.97 16 21 C -0.15 -2.81 10.90 22.71 0.25 -2.57 16 22 C -0.23 -3.36 10.87 22.06 0.24 -3.12 16 23 C -0.01 -0.23 12.06 67.11 0.81 0.58 16 24 O -0.19 -4.49 10.18 -6.23 -0.06 -4.55 16 25 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.37 20.53 7.80 -92.71 -0.72 19.81 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.39 9.56 9.12 -74.06 -0.68 8.88 16 30 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.05 2.13 7.39 -2.39 -0.02 2.11 16 32 H 0.41 15.04 8.10 -92.71 -0.75 14.29 16 33 H 0.13 3.93 7.72 -2.91 -0.02 3.91 16 34 H 0.16 4.09 7.46 -2.91 -0.02 4.07 16 35 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.24 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -73.26 330.42 0.15 -73.11 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -1.03 Total: 47.70 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.88 Total: 7.40 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -3.71 Total: -123.54 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.02 Total: -51.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.26 0.15 -73.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734357225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.348 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds