Wall clock time and date at job start Tue Mar 31 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99600 * 2 1 4 4 H 1.48497 * 109.47386 * 240.00058 * 3 2 1 5 5 H 1.48508 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47286 * 120.00029 * 3 2 1 7 7 C 1.38811 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99396 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99638 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.84595 * 23.81134 * 10 9 7 12 12 C 1.53779 * 113.61276 * 155.00174 * 10 9 7 13 13 C 1.53787 * 87.07963 * 89.20243 * 12 10 9 14 14 H 1.08994 * 113.61447 * 270.88515 * 13 12 10 15 15 N 1.46496 * 113.61210 * 139.97940 * 13 12 10 16 16 C 1.34774 * 120.00099 * 155.00440 * 15 13 12 17 17 O 1.21282 * 120.00036 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00600 * 180.02562 * 16 15 13 19 19 C 1.52994 * 109.47425 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47340 * 180.02562 * 19 18 16 21 21 F 1.39897 * 109.47059 * 59.99840 * 20 19 18 22 22 F 1.39890 * 109.47390 * 180.02562 * 20 19 18 23 23 F 1.39901 * 109.46827 * 299.99980 * 20 19 18 24 24 C 1.53779 * 113.69339 * 252.54107 * 10 9 7 25 25 H 0.96993 * 120.00723 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00739 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.61646 * 334.65874 * 12 10 9 28 28 H 1.09000 * 113.61527 * 203.75146 * 12 10 9 29 29 H 0.97002 * 120.00490 * 335.00104 * 15 13 12 30 30 H 1.09005 * 109.46821 * 300.00153 * 18 16 15 31 31 H 1.09008 * 109.47008 * 59.99541 * 18 16 15 32 32 H 1.08998 * 109.47410 * 299.99589 * 19 18 16 33 33 H 1.08997 * 109.47537 * 60.00290 * 19 18 16 34 34 H 1.09002 * 113.61557 * 156.32618 * 24 10 9 35 35 H 1.09004 * 113.61501 * 25.42039 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2849 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 2.0584 -3.6567 0.0016 11 1 3.0662 -3.5634 0.4063 12 6 1.2610 -4.8285 0.5982 13 6 0.7220 -5.0808 -0.8199 14 1 -0.1889 -4.5266 -1.0458 15 7 0.6266 -6.5008 -1.1672 16 6 -0.2520 -6.9076 -2.1048 17 8 -0.9639 -6.0982 -2.6607 18 6 -0.3506 -8.3684 -2.4618 19 6 -1.4157 -8.5583 -3.5436 20 6 -1.5163 -10.0415 -3.9056 21 9 -1.8702 -10.7759 -2.7688 22 9 -2.4897 -10.2150 -4.8952 23 9 -0.2804 -10.4895 -4.3842 24 6 2.0005 -4.4037 -1.3413 25 1 -0.4851 0.8399 0.0004 26 1 0.3557 -2.3881 0.0016 27 1 0.4941 -4.5183 1.3079 28 1 1.8882 -5.6355 0.9770 29 1 1.1957 -7.1483 -0.7225 30 1 0.6125 -8.7172 -2.8344 31 1 -0.6266 -8.9410 -1.5763 32 1 -2.3787 -8.2097 -3.1706 33 1 -1.1402 -7.9857 -4.4293 34 1 2.8299 -5.0946 -1.4928 35 1 1.8306 -3.7506 -2.1973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752621163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:29 Heat of formation + Delta-G solvation = -171.486044 kcal Electronic energy + Delta-G solvation = -21439.477449 eV Core-core repulsion = 17443.995690 eV Total energy + Delta-G solvation = -3995.481759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.39961 -47.88970 -47.88070 -39.99959 -38.15857 -34.11987 -33.97596 -32.64971 -29.79406 -27.50815 -25.15455 -24.41957 -23.23317 -22.30805 -20.51456 -19.02515 -18.86467 -18.51290 -17.88824 -17.37393 -16.47414 -16.04950 -15.90548 -14.91418 -14.78189 -14.72767 -14.30900 -14.12936 -14.05844 -14.01819 -13.95290 -13.61176 -13.12258 -12.78166 -12.62202 -12.18039 -12.06684 -12.02430 -11.71726 -11.64684 -10.88384 -10.82524 -10.32074 -10.20438 -10.02209 -9.75612 -9.65295 -8.94299 -8.78167 -7.03613 -5.81309 -3.11745 2.41617 2.58437 3.11335 3.42168 3.46538 3.47806 3.57874 3.76098 3.76811 4.40558 4.54204 4.60278 4.76077 5.00299 5.08652 5.18705 5.29626 5.35430 5.44227 5.44949 5.83948 5.94956 6.04417 6.16181 6.32150 6.56186 6.68087 6.73197 6.98250 7.54575 7.66704 8.22378 8.36788 9.47516 10.03369 10.37309 11.40769 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.002771 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.087524 B =10103.167797 C =10358.553158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.164 4.164 13 C 0.124 3.876 14 H 0.114 0.886 15 N -0.715 5.715 16 C 0.513 3.487 17 O -0.537 6.537 18 C -0.147 4.147 19 C -0.151 4.151 20 C 0.453 3.547 21 F -0.185 7.185 22 F -0.183 7.183 23 F -0.185 7.185 24 C -0.184 4.184 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.398 0.602 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -22.275 -4.384 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.204 4.204 13 C 0.020 3.980 14 H 0.132 0.868 15 N -0.365 5.365 16 C 0.298 3.702 17 O -0.414 6.414 18 C -0.187 4.187 19 C -0.189 4.189 20 C 0.399 3.601 21 F -0.166 7.166 22 F -0.165 7.165 23 F -0.166 7.166 24 C -0.227 4.227 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.231 0.769 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.635 -21.516 -4.774 22.048 hybrid contribution 0.388 0.227 0.065 0.454 sum -0.247 -21.288 -4.708 21.804 Atomic orbital electron populations 1.69649 1.05166 1.26039 1.56916 1.24785 0.95536 0.97857 1.02503 0.86236 0.78520 0.83326 0.77881 1.21166 1.21642 1.21167 1.19224 0.91083 0.83896 1.43642 0.90961 1.42193 1.05762 0.99404 1.87028 1.20907 0.95287 0.85431 0.92551 0.91351 1.23904 1.00774 0.99997 0.95763 1.22687 0.99877 0.79338 0.96092 0.86795 1.46109 1.39836 1.10133 1.40398 1.20245 0.80209 0.89852 0.79858 1.90765 1.43182 1.55322 1.52108 1.21638 1.00905 0.95990 1.00211 1.22614 1.04258 0.88842 1.03230 1.20629 0.73485 0.91540 0.74494 1.93184 1.91952 1.80356 1.51131 1.93196 1.63743 1.96441 1.63079 1.93186 1.43479 1.91309 1.88653 1.24325 0.96174 0.99766 1.02418 0.93272 0.77970 0.90823 0.90279 0.76851 0.87656 0.87661 0.86331 0.86322 0.91235 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.39 5.31 -52.63 -0.28 -17.67 16 10 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.16 -2.47 7.58 -25.92 -0.20 -2.67 16 13 C 0.12 1.93 4.12 -67.12 -0.28 1.65 16 14 H 0.11 2.18 7.47 -51.93 -0.39 1.79 16 15 N -0.71 -8.34 5.35 -53.02 -0.28 -8.63 16 16 C 0.51 6.34 7.83 -10.99 -0.09 6.26 16 17 O -0.54 -9.16 15.58 5.56 0.09 -9.07 16 18 C -0.15 -1.15 5.46 -27.89 -0.15 -1.30 16 19 C -0.15 -1.23 4.55 -26.73 -0.12 -1.35 16 20 C 0.45 3.78 3.16 37.16 0.12 3.89 16 21 F -0.18 -1.62 16.80 2.25 0.04 -1.58 16 22 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 23 F -0.18 -1.63 16.80 2.25 0.04 -1.59 16 24 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.39 10.19 7.90 -40.82 -0.32 9.86 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.40 3.24 8.73 -40.82 -0.36 2.88 16 30 H 0.11 0.64 7.80 -51.93 -0.41 0.24 16 31 H 0.11 0.63 7.80 -51.92 -0.41 0.23 16 32 H 0.12 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.12 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -32.16 314.17 -5.77 -37.92 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.37 Total: 8.91 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.47 Total: -1.20 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.16 Total: -53.58 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.11 Total: -4.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.16 -5.77 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752621163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.561 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds