Wall clock time and date at job start Tue Mar 31 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99600 * 2 1 4 4 H 1.48497 * 109.47386 * 240.00058 * 3 2 1 5 5 H 1.48508 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47286 * 120.00029 * 3 2 1 7 7 C 1.38811 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99396 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99638 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.84595 * 23.81134 * 10 9 7 12 12 C 1.53779 * 113.61276 * 155.00174 * 10 9 7 13 13 C 1.53787 * 87.07963 * 89.20243 * 12 10 9 14 14 H 1.08994 * 113.61447 * 270.88515 * 13 12 10 15 15 N 1.46496 * 113.61210 * 139.97940 * 13 12 10 16 16 C 1.34774 * 120.00099 * 155.00440 * 15 13 12 17 17 O 1.21282 * 120.00036 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00600 * 180.02562 * 16 15 13 19 19 C 1.52994 * 109.47425 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47340 * 180.02562 * 19 18 16 21 21 F 1.39897 * 109.47059 * 59.99840 * 20 19 18 22 22 F 1.39890 * 109.47390 * 180.02562 * 20 19 18 23 23 F 1.39901 * 109.46827 * 299.99980 * 20 19 18 24 24 C 1.53779 * 113.69339 * 252.54107 * 10 9 7 25 25 H 0.96993 * 120.00723 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00739 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.61646 * 334.65874 * 12 10 9 28 28 H 1.09000 * 113.61527 * 203.75146 * 12 10 9 29 29 H 0.97002 * 120.00490 * 335.00104 * 15 13 12 30 30 H 1.09005 * 109.46821 * 300.00153 * 18 16 15 31 31 H 1.09008 * 109.47008 * 59.99541 * 18 16 15 32 32 H 1.08998 * 109.47410 * 299.99589 * 19 18 16 33 33 H 1.08997 * 109.47537 * 60.00290 * 19 18 16 34 34 H 1.09002 * 113.61557 * 156.32618 * 24 10 9 35 35 H 1.09004 * 113.61501 * 25.42039 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2849 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 2.0584 -3.6567 0.0016 11 1 3.0662 -3.5634 0.4063 12 6 1.2610 -4.8285 0.5982 13 6 0.7220 -5.0808 -0.8199 14 1 -0.1889 -4.5266 -1.0458 15 7 0.6266 -6.5008 -1.1672 16 6 -0.2520 -6.9076 -2.1048 17 8 -0.9639 -6.0982 -2.6607 18 6 -0.3506 -8.3684 -2.4618 19 6 -1.4157 -8.5583 -3.5436 20 6 -1.5163 -10.0415 -3.9056 21 9 -1.8702 -10.7759 -2.7688 22 9 -2.4897 -10.2150 -4.8952 23 9 -0.2804 -10.4895 -4.3842 24 6 2.0005 -4.4037 -1.3413 25 1 -0.4851 0.8399 0.0004 26 1 0.3557 -2.3881 0.0016 27 1 0.4941 -4.5183 1.3079 28 1 1.8882 -5.6355 0.9770 29 1 1.1957 -7.1483 -0.7225 30 1 0.6125 -8.7172 -2.8344 31 1 -0.6266 -8.9410 -1.5763 32 1 -2.3787 -8.2097 -3.1706 33 1 -1.1402 -7.9857 -4.4293 34 1 2.8299 -5.0946 -1.4928 35 1 1.8306 -3.7506 -2.1973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752621163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:28 Heat of formation + Delta-G solvation = -194.153765 kcal Electronic energy + Delta-G solvation = -21440.460395 eV Core-core repulsion = 17443.995690 eV Total energy + Delta-G solvation = -3996.464705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.08380 -48.59231 -48.55255 -41.13260 -39.47352 -35.74104 -34.76791 -34.16210 -31.67713 -28.34638 -26.50160 -26.13346 -24.57737 -23.32641 -21.51614 -20.25960 -19.53690 -19.45405 -19.32363 -18.59284 -17.40982 -17.31244 -16.74797 -16.64835 -15.79929 -15.53221 -15.48191 -15.28792 -15.00208 -14.85642 -14.73954 -14.69261 -14.54929 -14.24975 -13.58514 -13.42180 -13.26158 -13.22451 -12.76389 -12.75906 -12.58279 -12.36050 -12.22019 -11.81121 -11.71392 -11.32491 -10.93799 -10.81142 -9.96213 -9.02931 -7.95817 -5.25600 1.47399 1.50797 1.56813 1.61457 1.70753 2.23455 2.55486 2.88773 3.05069 3.10853 3.36180 3.64989 3.68596 3.83919 3.90853 4.01204 4.04473 4.31785 4.36157 4.46445 4.68336 4.81525 4.84139 4.85391 5.02822 5.17234 5.27055 5.33581 5.51107 5.70864 6.26710 6.60944 7.30866 7.31300 8.08092 8.28860 9.27521 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.002771 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.087524 B =10103.167797 C =10358.553158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.148 3.852 11 H 0.077 0.923 12 C -0.138 4.138 13 C 0.131 3.869 14 H 0.070 0.930 15 N -0.700 5.700 16 C 0.509 3.491 17 O -0.591 6.591 18 C -0.134 4.134 19 C -0.150 4.150 20 C 0.461 3.539 21 F -0.185 7.185 22 F -0.191 7.191 23 F -0.185 7.185 24 C -0.171 4.171 25 H 0.251 0.749 26 H 0.372 0.628 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.421 0.579 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -24.538 -3.844 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.037 3.963 11 H 0.095 0.905 12 C -0.178 4.178 13 C 0.025 3.975 14 H 0.088 0.912 15 N -0.351 5.351 16 C 0.297 3.703 17 O -0.472 6.472 18 C -0.174 4.174 19 C -0.189 4.189 20 C 0.407 3.593 21 F -0.166 7.166 22 F -0.173 7.173 23 F -0.166 7.166 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.203 0.797 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.259 0.741 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.333 -23.867 -4.215 24.273 hybrid contribution -0.166 0.819 -0.126 0.845 sum 1.167 -23.049 -4.341 23.483 Atomic orbital electron populations 1.69822 1.06803 1.26224 1.59378 1.25634 0.96365 1.01385 1.03636 0.85176 0.77137 0.78924 0.78306 1.20455 1.22444 1.19922 1.19684 0.91688 0.85067 1.41250 0.90017 1.42397 1.05325 1.00933 1.87532 1.21272 0.95774 0.84614 0.94634 0.90495 1.23741 1.00079 0.99150 0.94799 1.22169 0.97482 0.81262 0.96543 0.91193 1.45853 1.40153 1.08762 1.40346 1.21042 0.79013 0.91430 0.78829 1.90758 1.45215 1.57251 1.53942 1.21632 1.02145 0.92427 1.01184 1.22574 1.04369 0.88612 1.03306 1.20519 0.73217 0.91348 0.74224 1.93186 1.91962 1.80388 1.51075 1.93183 1.64130 1.96466 1.63472 1.93187 1.43447 1.91327 1.88679 1.24181 0.98105 0.99556 0.99462 0.94026 0.79680 0.92175 0.85471 0.74115 0.85011 0.84965 0.86782 0.86841 0.87444 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.98 46.21 29.55 68.60 2.03 48.23 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.25 -13.57 9.97 84.03 0.84 -12.73 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.72 -36.43 5.31 -320.43 -1.70 -38.13 16 10 C 0.15 5.44 4.56 45.52 0.21 5.65 16 11 H 0.08 2.69 8.10 -2.38 -0.02 2.67 16 12 C -0.14 -3.84 7.58 31.12 0.24 -3.60 16 13 C 0.13 3.96 4.12 45.52 0.19 4.15 16 14 H 0.07 2.80 7.47 -2.39 -0.02 2.78 16 15 N -0.70 -14.48 5.35 -440.04 -2.36 -16.84 16 16 C 0.51 11.75 7.83 87.66 0.69 12.44 16 17 O -0.59 -20.43 15.58 -3.04 -0.05 -20.48 16 18 C -0.13 -1.68 5.46 29.85 0.16 -1.52 16 19 C -0.15 -2.21 4.55 30.59 0.14 -2.07 16 20 C 0.46 6.79 3.16 71.98 0.23 7.02 16 21 F -0.18 -2.79 16.80 44.97 0.76 -2.03 16 22 F -0.19 -3.40 17.32 44.97 0.78 -2.62 16 23 F -0.18 -2.80 16.80 44.97 0.76 -2.05 16 24 C -0.17 -5.56 7.68 31.12 0.24 -5.32 16 25 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.37 20.49 7.90 -92.71 -0.73 19.75 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.13 2.34 8.12 -2.39 -0.02 2.32 16 29 H 0.42 4.90 8.73 -92.71 -0.81 4.10 16 30 H 0.13 1.04 7.80 -2.38 -0.02 1.02 16 31 H 0.13 1.02 7.80 -2.38 -0.02 1.00 16 32 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 33 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.15 314.17 3.48 -69.68 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.40 Total: 24.53 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 3.39 Total: -0.04 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.78 Total: -115.22 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 2.29 Total: -6.70 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.15 3.48 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752621163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.478 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds