Wall clock time and date at job start Tue Mar 31 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 14 14 C 1.34782 * 119.99726 * 154.99585 * 13 11 10 15 15 O 1.21278 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.46780 * 180.02562 * 16 14 13 18 18 F 1.39894 * 109.47159 * 60.00404 * 17 16 14 19 19 F 1.39905 * 109.46904 * 180.02562 * 17 16 14 20 20 F 1.39905 * 109.47536 * 300.00175 * 17 16 14 21 21 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 22 22 C 1.52996 * 117.49852 * 248.74727 * 21 11 10 23 23 C 1.52995 * 117.50233 * 180.08435 * 21 11 10 24 24 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 0.97000 * 120.00390 * 335.00529 * 13 11 10 29 29 H 1.09000 * 109.47086 * 300.00860 * 16 14 13 30 30 H 1.09006 * 109.46761 * 60.00688 * 16 14 13 31 31 H 1.09006 * 115.54473 * 34.40981 * 21 11 10 32 32 H 1.08997 * 117.49676 * 359.97438 * 22 21 11 33 33 H 1.08999 * 117.49788 * 145.01561 * 22 21 11 34 34 H 1.09001 * 117.49820 * 214.97543 * 23 21 11 35 35 H 1.09004 * 117.49643 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4977 -4.8183 -0.9189 13 7 0.1438 -4.6703 1.1431 14 6 -1.0808 -5.2313 1.0941 15 8 -1.4210 -5.8601 0.1145 16 6 -2.0268 -5.0782 2.2572 17 6 -3.3372 -5.8048 1.9477 18 9 -3.0780 -7.1627 1.7331 19 9 -4.2156 -5.6622 3.0272 20 9 -3.9163 -5.2535 0.7997 21 6 1.8243 -6.1406 0.1454 22 6 1.8343 -7.0748 -1.0662 23 6 1.0017 -7.4303 0.1682 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6849 -3.7190 -0.8822 27 1 2.6842 -3.7101 0.8977 28 1 0.4159 -4.1676 1.9268 29 1 -1.5757 -5.5080 3.1515 30 1 -2.2284 -4.0201 2.4246 31 1 2.7229 -6.1057 0.7615 32 1 1.2985 -6.7486 -1.9576 33 1 2.7392 -7.6549 -1.2469 34 1 1.3593 -8.2442 0.7989 35 1 -0.0815 -7.3378 0.0891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754436713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:07 Heat of formation + Delta-G solvation = -157.939912 kcal Electronic energy + Delta-G solvation = -22645.544517 eV Core-core repulsion = 18650.650162 eV Total energy + Delta-G solvation = -3994.894355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01299 -47.56442 -47.41354 -39.95165 -37.31382 -35.09198 -33.55478 -31.98499 -30.92387 -28.05628 -24.42915 -23.78175 -22.19106 -21.57777 -20.86968 -20.12456 -18.69095 -18.47762 -17.56609 -17.21316 -16.53062 -15.91893 -15.51296 -15.03211 -14.56806 -14.39766 -14.29928 -13.96568 -13.82064 -13.61663 -13.59552 -13.55157 -13.21566 -12.96733 -12.51333 -12.23686 -11.91610 -11.74815 -11.24055 -11.10590 -10.95635 -10.87776 -10.22540 -10.19516 -10.00261 -9.81829 -9.71544 -8.99024 -8.78960 -7.03708 -5.85010 -3.15200 2.58621 2.61020 3.18155 3.38121 3.44222 3.46352 3.73021 3.97487 4.07694 4.28698 4.49756 4.82841 4.83207 4.99525 5.11043 5.13815 5.23029 5.38779 5.48646 5.71021 5.81509 5.84090 6.03227 6.16105 6.31146 6.38100 6.47144 6.58662 6.80721 7.61012 7.62766 8.26714 8.32865 9.44869 9.99277 10.34650 11.37304 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005303 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.783889 B = 5278.836575 C = 6720.697768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.090 0.910 13 N -0.699 5.699 14 C 0.521 3.479 15 O -0.528 6.528 16 C -0.198 4.198 17 C 0.473 3.527 18 F -0.176 7.176 19 F -0.186 7.186 20 F -0.171 7.171 21 C -0.164 4.164 22 C -0.170 4.170 23 C -0.185 4.185 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.037 0.963 27 H 0.026 0.974 28 H 0.407 0.593 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -13.734 6.163 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.108 0.892 13 N -0.349 5.349 14 C 0.306 3.694 15 O -0.405 6.405 16 C -0.239 4.239 17 C 0.419 3.581 18 F -0.157 7.157 19 F -0.168 7.168 20 F -0.152 7.152 21 C -0.184 4.184 22 C -0.208 4.208 23 C -0.222 4.222 24 H 0.065 0.935 25 H 0.220 0.780 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.242 0.758 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.061 -14.059 5.439 15.214 hybrid contribution 0.166 1.178 0.434 1.267 sum -1.894 -12.880 5.873 14.282 Atomic orbital electron populations 1.69671 1.05114 1.25685 1.57420 1.24756 0.95528 0.97760 1.02730 0.86111 0.78778 0.84001 0.77219 1.20539 1.21818 1.21851 1.19254 0.91085 0.83980 1.43118 0.91031 1.42353 1.05964 0.99741 1.89654 1.20924 0.92971 0.84974 0.99125 1.20866 0.90054 0.92966 0.89637 0.89175 1.45822 1.13930 1.53733 1.21371 1.19634 0.82614 0.79658 0.87509 1.90726 1.75814 1.40864 1.33140 1.22984 0.92787 1.06064 1.02067 1.19732 0.86079 0.77940 0.74395 1.93202 1.93988 1.33829 1.94718 1.93187 1.72025 1.95662 1.55887 1.93242 1.86053 1.85115 1.50823 1.22651 1.01538 0.91284 1.02953 1.22898 1.02044 1.02989 0.92823 1.23274 1.00667 0.97425 1.00857 0.93472 0.78050 0.94525 0.95638 0.75792 0.84702 0.84028 0.87795 0.88689 0.89156 0.89820 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.28 5.43 -59.91 -0.33 -17.61 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.70 16 11 C 0.17 2.67 2.43 -67.93 -0.17 2.50 16 12 H 0.09 1.65 7.34 -51.93 -0.38 1.26 16 13 N -0.70 -9.97 4.50 -53.80 -0.24 -10.21 16 14 C 0.52 7.55 6.93 -10.98 -0.08 7.47 16 15 O -0.53 -9.27 11.86 5.56 0.07 -9.20 16 16 C -0.20 -2.14 5.75 -27.88 -0.16 -2.30 16 17 C 0.47 6.07 2.89 37.16 0.11 6.18 16 18 F -0.18 -2.45 16.40 2.25 0.04 -2.41 16 19 F -0.19 -2.22 17.32 2.25 0.04 -2.18 16 20 F -0.17 -2.65 16.40 2.25 0.04 -2.62 16 21 C -0.16 -2.20 5.36 -90.62 -0.49 -2.68 16 22 C -0.17 -2.16 10.18 -26.70 -0.27 -2.43 16 23 C -0.19 -2.44 9.74 -26.70 -0.26 -2.70 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.39 9.70 7.33 -40.82 -0.30 9.40 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.41 5.29 8.60 -40.82 -0.35 4.94 16 29 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.14 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.12 1.81 5.02 -51.93 -0.26 1.55 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -31.02 309.85 -5.81 -36.84 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.21 Total: 10.79 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.58 Total: 1.69 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.16 Total: -54.27 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.11 Total: -7.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.02 -5.81 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754436713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.103 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds