Wall clock time and date at job start Tue Mar 31 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 14 14 C 1.34782 * 119.99726 * 154.99585 * 13 11 10 15 15 O 1.21278 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.46780 * 180.02562 * 16 14 13 18 18 F 1.39894 * 109.47159 * 60.00404 * 17 16 14 19 19 F 1.39905 * 109.46904 * 180.02562 * 17 16 14 20 20 F 1.39905 * 109.47536 * 300.00175 * 17 16 14 21 21 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 22 22 C 1.52996 * 117.49852 * 248.74727 * 21 11 10 23 23 C 1.52995 * 117.50233 * 180.08435 * 21 11 10 24 24 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 0.97000 * 120.00390 * 335.00529 * 13 11 10 29 29 H 1.09000 * 109.47086 * 300.00860 * 16 14 13 30 30 H 1.09006 * 109.46761 * 60.00688 * 16 14 13 31 31 H 1.09006 * 115.54473 * 34.40981 * 21 11 10 32 32 H 1.08997 * 117.49676 * 359.97438 * 22 21 11 33 33 H 1.08999 * 117.49788 * 145.01561 * 22 21 11 34 34 H 1.09001 * 117.49820 * 214.97543 * 23 21 11 35 35 H 1.09004 * 117.49643 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4977 -4.8183 -0.9189 13 7 0.1438 -4.6703 1.1431 14 6 -1.0808 -5.2313 1.0941 15 8 -1.4210 -5.8601 0.1145 16 6 -2.0268 -5.0782 2.2572 17 6 -3.3372 -5.8048 1.9477 18 9 -3.0780 -7.1627 1.7331 19 9 -4.2156 -5.6622 3.0272 20 9 -3.9163 -5.2535 0.7997 21 6 1.8243 -6.1406 0.1454 22 6 1.8343 -7.0748 -1.0662 23 6 1.0017 -7.4303 0.1682 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6849 -3.7190 -0.8822 27 1 2.6842 -3.7101 0.8977 28 1 0.4159 -4.1676 1.9268 29 1 -1.5757 -5.5080 3.1515 30 1 -2.2284 -4.0201 2.4246 31 1 2.7229 -6.1057 0.7615 32 1 1.2985 -6.7486 -1.9576 33 1 2.7392 -7.6549 -1.2469 34 1 1.3593 -8.2442 0.7989 35 1 -0.0815 -7.3378 0.0891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754436713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:06 Heat of formation + Delta-G solvation = -178.407967 kcal Electronic energy + Delta-G solvation = -22646.432078 eV Core-core repulsion = 18650.650162 eV Total energy + Delta-G solvation = -3995.781916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.05825 -48.58149 -48.51929 -41.13541 -38.49843 -36.61377 -35.03927 -33.31414 -32.43798 -29.58989 -26.04912 -25.06275 -23.29467 -23.04297 -21.98701 -21.30944 -19.77419 -19.52941 -19.21642 -18.48220 -17.74288 -17.07020 -16.72235 -16.62008 -15.90729 -15.54821 -15.46632 -15.18102 -15.05222 -14.93488 -14.76140 -14.69553 -14.65649 -14.43745 -13.82395 -13.36652 -13.17759 -12.97811 -12.80884 -12.69444 -12.45424 -12.24665 -12.02618 -11.83985 -11.31531 -11.12018 -10.98786 -10.86367 -9.99719 -9.00069 -7.93648 -5.22773 1.49026 1.49802 1.51228 1.58108 1.60356 2.11264 2.56864 2.74842 2.93754 3.09553 3.24593 3.41594 3.58801 3.79773 3.97554 4.13701 4.18032 4.19368 4.30155 4.35849 4.47516 4.65046 4.84361 4.92413 5.06862 5.12962 5.30552 5.37412 5.52090 5.55736 6.27482 6.47739 7.15354 7.35409 8.07906 8.31855 9.29355 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005303 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.783889 B = 5278.836575 C = 6720.697768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.059 0.941 13 N -0.695 5.695 14 C 0.515 3.485 15 O -0.563 6.563 16 C -0.187 4.187 17 C 0.470 3.530 18 F -0.184 7.184 19 F -0.179 7.179 20 F -0.192 7.192 21 C -0.162 4.162 22 C -0.168 4.168 23 C -0.181 4.181 24 H 0.250 0.750 25 H 0.375 0.625 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.415 0.585 29 H 0.177 0.823 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -14.292 7.479 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.077 0.923 13 N -0.345 5.345 14 C 0.301 3.699 15 O -0.443 6.443 16 C -0.227 4.227 17 C 0.416 3.584 18 F -0.165 7.165 19 F -0.160 7.160 20 F -0.173 7.173 21 C -0.182 4.182 22 C -0.206 4.206 23 C -0.218 4.218 24 H 0.059 0.941 25 H 0.207 0.793 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.251 0.749 29 H 0.194 0.806 30 H 0.175 0.825 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.487 -14.642 6.775 16.140 hybrid contribution -0.306 1.273 -0.002 1.309 sum -0.793 -13.368 6.772 15.007 Atomic orbital electron populations 1.69818 1.06539 1.25897 1.59492 1.25508 0.96295 1.00922 1.03737 0.85116 0.78344 0.80075 0.76438 1.18975 1.22706 1.22009 1.19646 0.91587 0.85063 1.41011 0.90322 1.42511 1.05674 1.00857 1.89526 1.21042 0.93325 0.83725 0.99566 1.20571 0.89531 0.93399 0.89062 0.92328 1.45753 1.13913 1.53778 1.21095 1.20198 0.82786 0.78820 0.88048 1.90721 1.76405 1.42345 1.34796 1.23019 0.90808 1.07089 1.01778 1.20020 0.86859 0.77696 0.73874 1.93184 1.94041 1.34533 1.94774 1.93199 1.71968 1.95596 1.55287 1.93201 1.86536 1.85395 1.52196 1.22570 1.01874 0.89867 1.03866 1.22979 1.02728 1.02802 0.92078 1.23206 0.99382 0.97776 1.01469 0.94130 0.79282 0.94710 0.93747 0.74868 0.80557 0.82481 0.85806 0.90218 0.86728 0.87730 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.93 13.06 21.65 0.28 -56.65 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 44.42 29.55 68.60 2.03 46.44 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.24 -12.64 9.99 84.03 0.84 -11.80 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -34.71 5.43 -343.46 -1.87 -36.58 16 10 C 0.15 5.34 5.80 86.38 0.50 5.84 16 11 C 0.18 5.53 2.43 44.99 0.11 5.64 16 12 H 0.06 2.19 7.34 -2.39 -0.02 2.18 16 13 N -0.70 -19.11 4.50 -442.51 -1.99 -21.10 16 14 C 0.52 14.55 6.93 87.66 0.61 15.16 16 15 O -0.56 -20.01 11.86 -3.02 -0.04 -20.04 16 16 C -0.19 -3.69 5.75 29.85 0.17 -3.51 16 17 C 0.47 11.63 2.89 71.98 0.21 11.84 16 18 F -0.18 -5.00 16.40 44.97 0.74 -4.27 16 19 F -0.18 -4.01 17.32 44.97 0.78 -3.23 16 20 F -0.19 -6.00 16.40 44.97 0.74 -5.27 16 21 C -0.16 -4.02 5.36 -10.80 -0.06 -4.08 16 22 C -0.17 -4.02 10.18 30.62 0.31 -3.71 16 23 C -0.18 -4.48 9.74 30.62 0.30 -4.18 16 24 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.37 19.00 7.33 -92.71 -0.68 18.32 16 26 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.41 10.06 8.60 -92.71 -0.80 9.27 16 29 H 0.18 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.16 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.12 2.63 8.11 -2.38 -0.02 2.61 16 32 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.85 5.02 -2.38 -0.01 2.84 16 Total: -1.00 -66.93 309.85 3.79 -63.13 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.33 Total: 29.85 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 3.46 Total: 7.71 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.57 Total: -114.33 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.04 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 2.25 Total: -12.76 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.93 3.79 -63.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754436713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.275 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds