Wall clock time and date at job start Tue Mar 31 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33649 * 125.80320 * 2 1 4 4 C 1.34219 * 110.90864 * 180.02562 * 3 2 1 5 5 C 1.34177 * 109.12619 * 359.70950 * 4 3 2 6 6 C 1.36419 * 125.80047 * 180.02562 * 2 1 3 7 7 C 1.47376 * 127.19384 * 359.97438 * 6 2 1 8 8 O 1.21612 * 119.99867 * 0.02562 * 7 6 2 9 9 N 1.34779 * 120.00112 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99876 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.42901 * 113.27929 * 313.07011 * 11 10 9 13 13 C 1.53492 * 114.20821 * 180.02562 * 11 10 9 14 14 N 1.47074 * 87.98581 * 220.34913 * 13 11 10 15 15 C 1.36930 * 136.05482 * 207.08964 * 14 13 11 16 16 H 1.07993 * 120.00328 * 6.80160 * 15 14 13 17 17 C 1.38815 * 119.99694 * 186.80721 * 15 14 13 18 18 N 1.31624 * 119.99778 * 172.52700 * 17 15 14 19 19 Si 1.86795 * 120.00056 * 352.24951 * 17 15 14 20 20 H 1.48498 * 109.47397 * 55.36216 * 19 17 15 21 21 H 1.48501 * 109.47238 * 175.35897 * 19 17 15 22 22 H 1.48502 * 109.47311 * 295.36092 * 19 17 15 23 23 C 1.47069 * 87.88197 * 27.34104 * 14 13 11 24 24 H 1.08998 * 109.46946 * 269.99743 * 1 2 3 25 25 H 1.08996 * 109.47047 * 29.99847 * 1 2 3 26 26 H 1.09001 * 109.47009 * 149.99467 * 1 2 3 27 27 H 1.07998 * 125.43750 * 180.02562 * 4 3 2 28 28 H 1.07996 * 127.02532 * 180.27129 * 5 4 3 29 29 H 0.96993 * 119.99975 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.46730 * 60.00319 * 10 9 7 31 31 H 1.09002 * 109.47201 * 300.00444 * 10 9 7 32 32 H 0.96698 * 114.00651 * 46.93493 * 12 11 10 33 33 H 1.08994 * 113.46944 * 105.56399 * 13 11 10 34 34 H 1.09001 * 113.51895 * 335.12968 * 13 11 10 35 35 H 0.96996 * 119.99886 * 4.49658 * 18 17 15 36 36 H 1.08992 * 113.46878 * 87.44462 * 23 14 13 37 37 H 1.09002 * 113.46558 * 217.87894 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6849 -0.5992 0.0055 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5158 -0.0006 8 8 0.6890 -2.7892 -0.0007 9 7 2.7930 -3.5016 -0.0006 10 6 2.3645 -4.9026 -0.0001 11 6 3.5947 -5.8122 -0.0009 12 8 4.5811 -5.4273 -0.9605 13 6 3.2685 -7.3120 -0.0011 14 7 4.3744 -7.4999 0.9500 15 6 5.2319 -8.5162 1.2768 16 1 5.2389 -9.4253 0.6939 17 6 6.0922 -8.3780 2.3575 18 7 6.8099 -9.4042 2.7627 19 14 6.2369 -6.7336 3.2317 20 1 4.8919 -6.2903 3.6784 21 1 7.1279 -6.8767 4.4110 22 1 6.8061 -5.7264 2.3006 23 6 4.1499 -6.1178 1.4000 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.4172 1.4283 -0.0003 28 1 4.5928 -1.1841 0.0108 29 1 3.7381 -3.2835 -0.0009 30 1 1.7667 -5.0999 -0.8900 31 1 1.7670 -5.0995 0.8900 32 1 4.7844 -4.4819 -0.9582 33 1 3.4379 -7.7930 -0.9644 34 1 2.2902 -7.5445 0.4196 35 1 6.7872 -10.2378 2.2672 36 1 3.4039 -6.0344 2.1902 37 1 5.0704 -5.5813 1.6303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754763381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:32 Heat of formation + Delta-G solvation = -30.181510 kcal Electronic energy + Delta-G solvation = -21771.818770 eV Core-core repulsion = 18324.321175 eV Total energy + Delta-G solvation = -3447.497594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.51637 -41.31415 -40.08636 -36.80751 -35.35527 -34.45890 -33.98444 -32.75416 -30.67938 -28.37585 -27.20180 -27.17001 -24.35592 -23.16064 -21.91716 -21.40294 -20.95069 -19.72391 -19.10683 -18.00345 -17.33935 -17.21029 -17.13999 -16.35651 -16.19976 -15.88499 -15.66377 -15.30061 -15.11145 -14.62811 -14.44340 -14.17673 -13.98548 -13.80486 -13.71310 -13.55527 -13.28500 -12.85031 -12.66002 -12.40458 -11.91329 -11.79006 -11.35390 -11.09787 -11.02956 -10.83425 -10.64278 -10.18828 -9.50755 -9.23263 -8.68751 -5.49162 0.33196 1.14872 1.34542 1.46624 1.66249 1.81794 2.15089 2.30199 2.52840 2.86128 2.94593 3.16506 3.29435 3.62805 3.73188 3.79699 3.91876 4.25018 4.38500 4.46547 4.55961 4.62953 4.64269 4.64990 4.71178 4.77386 4.79496 4.92428 5.00725 5.14113 5.20829 5.29285 5.41547 5.91716 6.04693 6.41481 6.66779 6.71525 7.13130 7.29155 8.22216 8.87364 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.004138 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.540194 B = 6764.778559 C = 7292.968221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.070 3.930 3 O -0.182 6.182 4 C -0.030 4.030 5 C -0.200 4.200 6 C -0.272 4.272 7 C 0.591 3.409 8 O -0.572 6.572 9 N -0.713 5.713 10 C 0.121 3.879 11 C 0.105 3.895 12 O -0.535 6.535 13 C 0.129 3.871 14 N -0.654 5.654 15 C -0.291 4.291 16 H 0.048 0.952 17 C -0.087 4.087 18 N -0.971 5.971 19 Si 1.112 2.888 20 H -0.257 1.257 21 H -0.305 1.305 22 H -0.270 1.270 23 C 0.069 3.931 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.247 0.753 28 H 0.179 0.821 29 H 0.409 0.591 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.385 0.615 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 25.800 -6.804 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 O -0.078 6.078 4 C -0.095 4.095 5 C -0.219 4.219 6 C -0.277 4.277 7 C 0.381 3.619 8 O -0.453 6.453 9 N -0.366 5.366 10 C -0.004 4.004 11 C 0.062 3.938 12 O -0.342 6.342 13 C 0.003 3.997 14 N -0.382 5.382 15 C -0.419 4.419 16 H 0.066 0.934 17 C -0.278 4.278 18 N -0.616 5.616 19 Si 0.938 3.062 20 H -0.183 1.183 21 H -0.233 1.233 22 H -0.197 1.197 23 C -0.056 4.056 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.263 0.737 28 H 0.196 0.804 29 H 0.246 0.754 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.235 0.765 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.330 25.783 -5.642 28.343 hybrid contribution 0.294 -1.358 -1.176 1.821 sum -10.036 24.425 -6.818 27.272 Atomic orbital electron populations 1.20636 0.82947 1.05310 1.04946 1.23138 0.94948 0.83249 0.97012 1.83797 1.18113 1.34713 1.71220 1.24673 0.83418 0.96920 1.04506 1.23200 0.96229 0.95384 1.07039 1.21189 0.95170 0.92894 1.18412 1.17416 0.84975 0.84466 0.75077 1.90742 1.17745 1.84624 1.52229 1.45582 1.10281 1.05409 1.75313 1.21698 0.95444 0.79179 1.04037 1.22734 0.87611 0.94835 0.88625 1.86639 1.59830 1.30393 1.57364 1.22637 0.92206 0.90916 0.93893 1.45767 1.35853 1.11641 1.44924 1.19983 1.14611 0.94602 1.12665 0.93432 1.27168 0.96254 1.07209 0.97196 1.71029 1.47121 1.03108 1.40389 0.83229 0.77088 0.71153 0.74741 1.18253 1.23273 1.19705 1.23763 0.99312 0.85739 0.96823 0.88641 0.88315 0.88822 0.73678 0.80368 0.75436 0.89636 0.89611 0.76500 0.93197 0.90051 0.94557 0.91348 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.89 71.24 0.70 -0.55 16 2 C 0.07 1.32 7.37 25.26 0.19 1.50 16 3 O -0.18 -2.96 10.52 4.46 0.05 -2.92 16 4 C -0.03 -0.35 12.03 66.89 0.80 0.46 16 5 C -0.20 -2.83 10.60 23.65 0.25 -2.58 16 6 C -0.27 -5.55 6.31 -18.99 -0.12 -5.67 16 7 C 0.59 14.40 7.81 86.65 0.68 15.08 16 8 O -0.57 -17.13 14.84 -4.07 -0.06 -17.19 16 9 N -0.71 -15.13 5.34 -466.40 -2.49 -17.62 16 10 C 0.12 2.99 5.42 86.38 0.47 3.45 16 11 C 0.10 3.26 1.74 -10.37 -0.02 3.24 16 12 O -0.54 -16.49 13.56 -148.98 -2.02 -18.51 16 13 C 0.13 4.91 8.10 83.18 0.67 5.58 16 14 N -0.65 -31.98 3.70 -738.36 -2.73 -34.71 16 15 C -0.29 -17.47 11.08 84.04 0.93 -16.54 16 16 H 0.05 3.10 8.05 -2.91 -0.02 3.07 16 17 C -0.09 -5.32 5.50 84.86 0.47 -4.85 16 18 N -0.97 -64.04 13.70 21.65 0.30 -63.74 16 19 Si 1.11 53.45 25.13 68.60 1.72 55.17 16 20 H -0.26 -10.96 6.13 99.48 0.61 -10.35 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 22 H -0.27 -11.78 6.65 99.48 0.66 -11.12 16 23 C 0.07 2.64 5.15 83.27 0.43 3.07 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.76 6.48 -2.39 -0.02 1.74 16 27 H 0.25 0.59 8.06 -2.91 -0.02 0.57 16 28 H 0.18 1.61 7.74 -2.91 -0.02 1.59 16 29 H 0.41 6.69 6.12 -92.71 -0.57 6.12 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 32 H 0.39 7.76 7.21 -74.06 -0.53 7.23 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 35 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 36 H 0.07 2.49 7.51 -2.39 -0.02 2.47 16 37 H 0.05 2.09 4.65 -2.39 -0.01 2.08 16 Total: -1.00 -81.72 310.80 0.06 -81.66 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.16 Total: 15.64 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.45 Total: 2.21 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.92 Total: -116.07 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -2.03 Total: -38.61 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 1.72 Total: 55.17 kcal Total: -81.72 0.06 -81.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.478 kcal (2) G-P(sol) polarization free energy of solvation -81.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds